Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007500

Physical Location & Seq

Genomic Coordinates Reverse (-)

26365335 .. 26366203

Gene Structure 869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008161

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAGACATCCACAGTGGCAGACTGACACCCCGGAGGATGAAGCTGCTGAAGAGTCCCTCAATGATTCTCTTAAGGACGTGCAAGATATGTCTCTTAGGCTCTCAGTTGATGGGGACAAATCCTCACTGAAAGAATCTCTTGATGTGACTGCAGCTTCTGGTGACCATGAGGTGCAAGATCAAGTGAAGCGTGTCCTAAGCAAGATCAAGAAACCAGATTCTGGTCCAAAAGACCATGAAGAAGGAAATAAGCTGCCGGATAATGTAGCAAGCAAATATCCCCTGGTTGCTCTGCTAACAGCTATGCCAGCATCAGAAACAGTAGAGTTTCTGGCATCAGGGAGGATACAGGCAAATGAGTTTGATGCGTTGGTTTGTAGCAGTGGAAGTGAGGTTTACTACCCTGGTACTTATACAGAAGAAGATGGAAGACTTTTCCCAGATCCAGATTATTCATCACACATTGACTACCGATGGGGTTGTGAAGGATTAAAGAAAACCATTTGGAAGCTCTTAGATGGCCCTGATGGTAAACTGAATTCCAGATCTTCGAGCCACATTGAAGAAGATATAAAATCAAGCAGTGCCCATTGCATTTCATTCTTGATCAAGGATCCTAGCAAGGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046524 GO:0046527

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

211

Amino Acids

23.23

Weight (kDa)

4.71

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007500)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13520 FvH4_4g13520 FvH4_6g47971 FvH4_6g47972 FvH4_6g48814
rosa_laevigata	RLG00000008161 RLG00000008164
rosa_multiflora	Rmu_sc0000808.1_g000028 Rmu_sc0010419.1_g000002 Rmu_sc0010419.1_g000004
rosa_roxburghii	Rroxscaffold_2G00121520
rosa_rugosa	Rorug04G0055100 Rorug07G0176500
rosa_samantha	Rh4CG197100 Rh4CG197400 Rh4DG180200 Rh4DG180500 Rh4DG181100 Rh7AG324900 Rh7AG325000 Rh7AG341000 Rh7CG341800 Rh7CG341900 Rh7CG358700
rosa_wichuraiana	Rw4G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	221
AclWI	GGATC	3 cut(s)	437, 608, 621
AcsI	RAATTY	1 cut(s)	538
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	1 cut(s)	221
AflII	CTTAAG	1 cut(s)	71
AgsI	TTSAA	1 cut(s)	563
AjiI	CACGTC	1 cut(s)	79
AjnI	CCWGG	2 cut(s)	282, 403
AluBI	AGCT	5 cut(s)	44, 155, 253, 302, 511
AluI	AGCT	5 cut(s)	44, 155, 253, 302, 511
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	3 cut(s)	437, 608, 621
AlwNI	CAGNNNCTG	2 cut(s)	158, 221
AoxI	GGCC	1 cut(s)	520
ApeKI	GCWGC	3 cut(s)	44, 152, 253
ApoI	RAATTY	1 cut(s)	538
AspS9I	GGNCC	2 cut(s)	224, 521
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	589
BamHI	GGATCC	1 cut(s)	613
BbsI	GAAGAC	1 cut(s)	436
BbvI	GCAGC	3 cut(s)	31, 164, 240
BccI	CCATC	5 cut(s)	104, 419, 468, 512, 521
BciT130I	CCWGG	2 cut(s)	284, 405
BciVI	GTATCC	1 cut(s)	339
BclI	TGATCA	1 cut(s)	606
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	1 cut(s)	618
BfmI	CTRYAG	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	71
BfuI	GTATCC	1 cut(s)	339
BglII	AGATCT	1 cut(s)	545
BisI	GCNGC	3 cut(s)	45, 153, 254
BlsI	GCNGC	3 cut(s)	46, 154, 255
Bme1390I	CCNGG	3 cut(s)	32, 284, 405
Bme18I	GGWCC	1 cut(s)	224
BmgBI	CACGTC	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	224, 521
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	3 cut(s)	32, 284, 405
BmsI	GCATC	3 cut(s)	320, 344, 355
BpiI	GAAGAC	1 cut(s)	436
Bpu10I	CCTNAGC	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	30, 282, 403
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	589
BseBI	CCWGG	2 cut(s)	284, 405
BseDI	CCNNGG	3 cut(s)	30, 282, 403
BseGI	GGATG	2 cut(s)	7, 43
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	1 cut(s)	117
BseSI	GKGCMC	1 cut(s)	589
BseXI	GCAGC	3 cut(s)	31, 164, 240
BshFI	GGCC	1 cut(s)	522
BsiSI	CCGG	2 cut(s)	32, 257
BslFI	GGGAC	2 cut(s)	40, 128
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	2 cut(s)	40, 128
BsnI	GGCC	1 cut(s)	522
Bsp1286I	GDGCHC	1 cut(s)	589
Bsp143I	GATC	6 cut(s)	178, 204, 442, 545, 606, 613
BspANI	GGCC	1 cut(s)	522
BspCNI	CTCAG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	615
BspMAI	CTGCAG	1 cut(s)	154
BspPI	GGATC	3 cut(s)	437, 608, 621
BspTI	CTTAAG	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	589
BssECI	CCNNGG	3 cut(s)	30, 282, 403
BssMI	GATC	6 cut(s)	178, 204, 442, 545, 606, 613
Bst2UI	CCWGG	2 cut(s)	284, 405
Bst4CI	ACNGT	2 cut(s)	15, 322
Bst6I	CTCTTC	1 cut(s)	45
BstAFI	CTTAAG	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	271, 309
BstDEI	CTNAG	4 cut(s)	95, 103, 197, 514
BstEII	GGTNACC	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	7, 43
BstKTI	GATC	6 cut(s)	181, 207, 445, 548, 609, 616
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	6 cut(s)	178, 204, 442, 545, 606, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	2 cut(s)	284, 405
BstPI	GGTNACC	1 cut(s)	161
BstSCI	CCNGG	3 cut(s)	30, 282, 403
BstSFI	CTRYAG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	589
BstV1I	GCAGC	3 cut(s)	31, 164, 240
BstV2I	GAAGAC	1 cut(s)	436
BstX2I	RGATCY	3 cut(s)	442, 545, 613
BstYI	RGATCY	3 cut(s)	442, 545, 613
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	522
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	7, 43
BtsI	GCAGTG	2 cut(s)	388, 589
BtsIMutI	CAGTG	4 cut(s)	20, 125, 388, 589
Cac8I	GCNNGC	2 cut(s)	271, 309
CaiI	CAGNNNCTG	2 cut(s)	158, 221
Cfr13I	GGNCC	2 cut(s)	224, 521
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	2 cut(s)	167, 236
CviJI	RGCY	8 cut(s)	44, 100, 155, 253, 302, 511, 522, 555
CviKI_1	RGCY	8 cut(s)	44, 100, 155, 253, 302, 511, 522, 555
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	4 cut(s)	95, 103, 197, 514
DpnI	GATC	6 cut(s)	180, 206, 444, 547, 608, 615
DpnII	GATC	6 cut(s)	178, 204, 442, 545, 606, 613
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	69
Eco91I	GGTNACC	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	538
EcoRII	CCWGG	2 cut(s)	282, 403
FaeI	CATG	2 cut(s)	170, 239
FaiI	YATR	6 cut(s)	89, 168, 237, 305, 414, 572
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FaqI	GGGAC	2 cut(s)	40, 128
FatI	CATG	2 cut(s)	166, 235
FbaI	TGATCA	1 cut(s)	606
Fnu4HI	GCNGC	3 cut(s)	45, 153, 254
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	3 cut(s)	45, 153, 254
FspBI	CTAG	1 cut(s)	618
GluI	GCNGC	3 cut(s)	45, 153, 254
HaeIII	GGCC	1 cut(s)	522
HapII	CCGG	2 cut(s)	32, 257
Hin1II	CATG	2 cut(s)	170, 239
HinfI	GANTC	4 cut(s)	53, 65, 134, 218
HpaII	CCGG	2 cut(s)	32, 257
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	397, 533
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	5 cut(s)	140, 208, 446, 543, 604
Hpy8I	GTNNAC	2 cut(s)	397, 533
HpyAV	CCTTC	2 cut(s)	236, 479
HpyCH4III	ACNGT	2 cut(s)	15, 322
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	4 cut(s)	82, 152, 175, 594
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	4 cut(s)	95, 103, 197, 514
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	170, 239
Ksp22I	TGATCA	1 cut(s)	606
Kzo9I	GATC	6 cut(s)	178, 204, 442, 545, 606, 613
Lsp1109I	GCAGC	3 cut(s)	31, 164, 240
LweI	GCATC	3 cut(s)	320, 344, 355
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	145, 161
MalI	GATC	6 cut(s)	180, 206, 444, 547, 608, 615
MboI	GATC	6 cut(s)	178, 204, 442, 545, 606, 613
MboII	GAAGA	8 cut(s)	62, 251, 431, 434, 441, 540, 575, 578
MflI	RGATCY	3 cut(s)	442, 545, 613
MhlI	GDGCHC	1 cut(s)	589
MluCI	AATT	1 cut(s)	538
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	6 cut(s)	28, 68, 133, 163, 336, 385
MseI	TTAA	2 cut(s)	72, 491
MspCI	CTTAAG	1 cut(s)	71
MspI	CCGG	2 cut(s)	32, 257
MspR9I	CCNGG	3 cut(s)	32, 284, 405
MvaI	CCWGG	2 cut(s)	284, 405
MwoI	GCNNNNNNNGC	1 cut(s)	308
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	6 cut(s)	178, 204, 442, 545, 606, 613
NlaIII	CATG	2 cut(s)	170, 239
NlaIV	GGNNCC	1 cut(s)	615
NmuCI	GTSAC	2 cut(s)	145, 161
PfeI	GAWTC	3 cut(s)	65, 134, 218
PflMI	CCANNNNNTGG	1 cut(s)	221
PkrI	GCNGC	3 cut(s)	46, 154, 255
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp6I	CCWGG	2 cut(s)	282, 403
PspEI	GGTNACC	1 cut(s)	161
PspGI	CCWGG	2 cut(s)	282, 403
PspN4I	GGNNCC	1 cut(s)	615
PspPI	GGNCC	2 cut(s)	224, 521
PstI	CTGCAG	1 cut(s)	154
PstNI	CAGNNNCTG	2 cut(s)	158, 221
PsuI	RGATCY	3 cut(s)	442, 545, 613
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	72, 491
SatI	GCNGC	3 cut(s)	45, 153, 254
Sau3AI	GATC	6 cut(s)	178, 204, 442, 545, 606, 613
Sau96I	GGNCC	2 cut(s)	224, 521
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	3 cut(s)	32, 284, 405
SduI	GDGCHC	1 cut(s)	589
SetI	ASST	8 cut(s)	46, 81, 157, 174, 255, 304, 396, 513
SfaNI	GCATC	3 cut(s)	320, 344, 355
SfcI	CTRYAG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	538
SspMI	CTAG	1 cut(s)	618
StyD4I	CCNGG	3 cut(s)	30, 282, 403
TaaI	ACNGT	2 cut(s)	15, 322
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	1 cut(s)	551
TasI	AATT	1 cut(s)	538
TfiI	GAWTC	3 cut(s)	65, 134, 218
Tru1I	TTAA	2 cut(s)	72, 491
Tru9I	TTAA	2 cut(s)	72, 491
TscAI	CASTG	4 cut(s)	20, 132, 388, 589
TseFI	GTSAC	2 cut(s)	145, 161
TseI	GCWGC	3 cut(s)	44, 152, 253
Tsp45I	GTSAC	2 cut(s)	145, 161
TspDTI	ATGAA	4 cut(s)	54, 252, 444, 588
TspRI	CASTG	4 cut(s)	20, 132, 388, 589
Van91I	CCANNNNNTGG	1 cut(s)	221
Vha464I	CTTAAG	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	1 cut(s)	538
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.