Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007500

Physical Location & Seq

Genomic Coordinates Forward (+)

36688928 .. 36692084

Gene Structure 3157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48814.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGCAGCGGAGACCAGCATTGTGTGCCCGCCGGTGGAGGAATCTTTGGAAGACAAGGCCTTCTGATCTTGTTTTAGACATTGCAAATATTTTTGGATCCGTGTATGCTCCAGTCGTTGCAAGACATGAGAGATACTATACTTTTGCATCCATGACTCCTCGATTTGAGAGGCAGTGCTATATACAACGTGTTAATAAAGCTGATAAAGATATATATGTTTTTCCTCACTGGATCCTTGCAGATTTGAACGTATCAACCCTAAAGCATTTGACGTTGTATCGATGTGTTCTAAAACCTCCTACTGGTTTTGACAGATTCGTTCAGCTAACAACTCTTTGTCTGCATTATGTTGAAGTTGATCCATATTTTATGGCACATCTGTTCTCTGCTTGTTCACTTCCCGAACGCCTCACCTTGACAAAGTGTAGAGTGTGCTCAGATCTGATTATTGGTCCATCGCTTCACCTGCATGATCTGAAAGTGTTATCGTGTTACCCGTTAGAAAGATTAGAGATCGATGCAAATGCTGAACACTGGTACTACCCTGTCATTATAAAGAAAACCATTTGGAAGCTCTCAAATGCCCCTGATGGTGAACGAAATTCGGGATCTTCCAACCAAATTGAAGAAGATTTGAAATCAAGCAATTCCCATTGCATTTCATACTTGATCAAGGATCCTAGTAAGGCAAGGAAAGTTGATGATTTAAGGCAGAAACTCAGGATGCGCGGACTACGCTGCCATCCAATGTACTGCAGGAGCTCAACACGAATGCAAATTGTTCCGCTCCTTGCTTCTCGAGCACAGGCTCTCAGGTATCTTTTTGTACGCTGGAGATTGAATGTCGCAAACATGTTCGTGTTCCTTGGAGAAAGTGGGGACACCGATTATGAAGAAATGATTGCAGGGACTCACAAGACCATAATCATGAAAGTGGTGGTGGGAAAGGGTTCTGAAGAGCTGCTAAGAACATCAGGAAGCTATGTGAGAGACGACATTGTTCCTCCTCAGAGCCCCTTGGTCGCCATTGTAAATGGGCAAGCTCCAACAGCTGATGAGATTGCGACTGCTTTGAAGCAAGTCAGCAAATCTGCTGCTGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046524 GO:0046527

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

369

Amino Acids

42.14

Weight (kDa)

9.28

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	68 - 174	2.3e-14	At1g61320/AtMIF1, LRR domain
S6PP	PF05116	214 - 324	4.7e-12	Sucrose-6F-phosphate phosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007500)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13520 FvH4_4g13520 FvH4_6g47971 FvH4_6g47972 FvH4_6g48814
rosa_laevigata	RLG00000008161 RLG00000008164
rosa_multiflora	Rmu_sc0000808.1_g000028 Rmu_sc0010419.1_g000002 Rmu_sc0010419.1_g000004
rosa_roxburghii	Rroxscaffold_2G00121520
rosa_rugosa	Rorug04G0055100 Rorug07G0176500
rosa_samantha	Rh4CG197100 Rh4CG197400 Rh4DG180200 Rh4DG180500 Rh4DG181100 Rh7AG324900 Rh7AG325000 Rh7AG341000 Rh7CG341800 Rh7CG341900 Rh7CG358700
rosa_wichuraiana	Rw4G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AarI	CACCTGC	1 cut(s)	474
Acc36I	ACCTGC	1 cut(s)	474
AccBSI	CCGCTC	1 cut(s)	787
AccII	CGCG	1 cut(s)	729
AciI	CCGC	4 cut(s)	7, 28, 729, 785
AclWI	GGATC	8 cut(s)	90, 103, 226, 239, 353, 616, 671, 684
AcsI	RAATTY	1 cut(s)	601
AcuI	CTGAAG	1 cut(s)	975
AfaI	GTAC	3 cut(s)	539, 752, 828
AfiI	CCNNNNNNNGG	2 cut(s)	33, 302
AflIII	ACRYGT	2 cut(s)	187, 852
AgsI	TTSAA	6 cut(s)	247, 353, 626, 637, 841, 1075
AluBI	AGCT	8 cut(s)	200, 325, 574, 762, 961, 981, 1043, 1052
AluI	AGCT	8 cut(s)	200, 325, 574, 762, 961, 981, 1043, 1052
Alw21I	GWGCWC	3 cut(s)	437, 764, 805
Alw26I	GTCTC	2 cut(s)	4, 984
AlwI	GGATC	8 cut(s)	90, 103, 226, 239, 353, 616, 671, 684
Ama87I	CYCGRG	1 cut(s)	798
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	4 cut(s)	4, 738, 961, 1094
ApoI	RAATTY	1 cut(s)	601
Asp700I	GAANNNNTTC	1 cut(s)	949
AspLEI	GCGC	1 cut(s)	729
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	3 cut(s)	403, 455, 605
AvaI	CYCGRG	1 cut(s)	798
AvaII	GGWCC	1 cut(s)	452
BaeGI	GKGCMC	1 cut(s)	28
BamHI	GGATCC	3 cut(s)	95, 231, 676
BanII	GRGCYC	2 cut(s)	764, 1016
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	3 cut(s)	437, 764, 805
BbvI	GCAGC	4 cut(s)	16, 725, 948, 1081
BccI	CCATC	3 cut(s)	463, 584, 750
BcgI	CGANNNNNNTGC	2 cut(s)	506, 540
BclI	TGATCA	1 cut(s)	669
BcoDI	GTCTC	2 cut(s)	4, 984
BfaI	CTAG	1 cut(s)	681
BfmI	CTRYAG	1 cut(s)	754
BfuAI	ACCTGC	1 cut(s)	474
BglII	AGATCT	1 cut(s)	439
BisI	GCNGC	4 cut(s)	5, 739, 962, 1095
BlsI	GCNGC	4 cut(s)	6, 740, 963, 1096
Bme18I	GGWCC	1 cut(s)	452
BmeT110I	CYCGRG	1 cut(s)	798
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	3 cut(s)	97, 233, 678
BmsI	GCATC	3 cut(s)	155, 508, 714
BpiI	GAAGAC	1 cut(s)	56
BpmI	CTGGAG	2 cut(s)	93, 853
Bsa29I	ATCGAT	2 cut(s)	280, 516
BsaI	GGTCTC	1 cut(s)	4
BsaJI	CCNNGG	2 cut(s)	865, 1017
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 302
Bse118I	RCCGGY	1 cut(s)	30
Bse1I	ACTGG	4 cut(s)	110, 233, 307, 539
Bse3DI	GCAATG	2 cut(s)	78, 652
BseCI	ATCGAT	2 cut(s)	280, 516
BseDI	CCNNGG	2 cut(s)	865, 1017
BseGI	GGATG	3 cut(s)	146, 729, 742
BseLI	CCNNNNNNNGG	2 cut(s)	33, 302
BseMI	GCAATG	2 cut(s)	78, 652
BseMII	CTCAG	4 cut(s)	450, 733, 826, 1022
BseNI	ACTGG	4 cut(s)	110, 233, 307, 539
BseRI	GAGGAG	2 cut(s)	147, 996
BseSI	GKGCMC	1 cut(s)	28
BseXI	GCAGC	4 cut(s)	16, 725, 948, 1081
Bsh1236I	CGCG	1 cut(s)	729
BshFI	GGCC	1 cut(s)	58
BshVI	ATCGAT	2 cut(s)	280, 516
BsiHKAI	GWGCWC	3 cut(s)	437, 764, 805
BsiHKCI	CYCGRG	1 cut(s)	798
BsiSI	CCGG	1 cut(s)	31
BslFI	GGGAC	2 cut(s)	893, 922
BslI	CCNNNNNNNGG	2 cut(s)	33, 302
BsmAI	GTCTC	2 cut(s)	4, 984
BsmBI	CGTCTC	1 cut(s)	984
BsmFI	GGGAC	2 cut(s)	893, 922
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	1 cut(s)	58
Bso31I	GGTCTC	1 cut(s)	4
BsoBI	CYCGRG	1 cut(s)	798
Bsp1286I	GDGCHC	5 cut(s)	28, 437, 764, 805, 1016
BspACI	CCGC	4 cut(s)	7, 28, 729, 785
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	4 cut(s)	449, 732, 825, 1021
BspDI	ATCGAT	2 cut(s)	280, 516
BspFNI	CGCG	1 cut(s)	729
BspHI	TCATGA	1 cut(s)	927
BspLI	GGNNCC	3 cut(s)	97, 233, 678
BspMAI	CTGCAG	1 cut(s)	758
BspMI	ACCTGC	1 cut(s)	474
BspPI	GGATC	8 cut(s)	90, 103, 226, 239, 353, 616, 671, 684
BspQI	GCTCTTC	1 cut(s)	951
BspTNI	GGTCTC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	787
BsrDI	GCAATG	2 cut(s)	78, 652
BsrFI	RCCGGY	1 cut(s)	30
BsrI	ACTGG	4 cut(s)	110, 233, 307, 539
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	2 cut(s)	865, 1017
BssT1I	CCWWGG	2 cut(s)	865, 1017
Bst6I	CTCTTC	1 cut(s)	951
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	2 cut(s)	28, 1041
BstDEI	CTNAG	5 cut(s)	436, 719, 812, 965, 1008
BstF5I	GGATG	3 cut(s)	146, 729, 742
BstFNI	CGCG	1 cut(s)	729
BstHHI	GCGC	1 cut(s)	729
BstMAI	GTCTC	2 cut(s)	4, 984
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 466, 735, 800, 1049
BstNSI	RCATGY	1 cut(s)	856
BstSFI	CTRYAG	1 cut(s)	754
BstSLI	GKGCMC	1 cut(s)	28
BstUI	CGCG	1 cut(s)	729
BstV1I	GCAGC	4 cut(s)	16, 725, 948, 1081
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	5 cut(s)	95, 231, 439, 608, 676
BstYI	RGATCY	5 cut(s)	95, 231, 439, 608, 676
Bsu15I	ATCGAT	2 cut(s)	280, 516
BsuRI	GGCC	1 cut(s)	58
BsuTUI	ATCGAT	2 cut(s)	280, 516
BtgZI	GCGATG	1 cut(s)	441
BtsCI	GGATG	3 cut(s)	146, 729, 742
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	3 cut(s)	179, 226, 532
BveI	ACCTGC	1 cut(s)	474
Cac8I	GCNNGC	2 cut(s)	28, 1041
CciI	TCATGA	1 cut(s)	927
CfoI	GCGC	1 cut(s)	729
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	452
ClaI	ATCGAT	2 cut(s)	280, 516
Csp6I	GTAC	3 cut(s)	538, 751, 827
CviAII	CATG	5 cut(s)	125, 151, 470, 853, 928
CviQI	GTAC	3 cut(s)	538, 751, 827
DdeI	CTNAG	5 cut(s)	436, 719, 812, 965, 1008
Eam1104I	CTCTTC	1 cut(s)	951
EarI	CTCTTC	1 cut(s)	951
Ecl136II	GAGCTC	1 cut(s)	762
Eco130I	CCWWGG	2 cut(s)	865, 1017
Eco147I	AGGCCT	1 cut(s)	58
Eco24I	GRGCYC	2 cut(s)	764, 1016
Eco31I	GGTCTC	1 cut(s)	4
Eco47I	GGWCC	1 cut(s)	452
Eco53kI	GAGCTC	1 cut(s)	762
Eco57I	CTGAAG	1 cut(s)	975
Eco88I	CYCGRG	1 cut(s)	798
EcoICRI	GAGCTC	1 cut(s)	762
EcoT14I	CCWWGG	2 cut(s)	865, 1017
EcoT38I	GRGCYC	2 cut(s)	764, 1016
ErhI	CCWWGG	2 cut(s)	865, 1017
Esp3I	CGTCTC	1 cut(s)	984
FaeI	CATG	5 cut(s)	128, 154, 473, 856, 931
FaqI	GGGAC	2 cut(s)	893, 922
FatI	CATG	5 cut(s)	124, 150, 469, 852, 927
FauI	CCCGC	1 cut(s)	35
FbaI	TGATCA	1 cut(s)	669
Fnu4HI	GCNGC	4 cut(s)	5, 739, 962, 1095
FokI	GGATG	3 cut(s)	133, 729, 736
FriOI	GRGCYC	2 cut(s)	764, 1016
Fsp4HI	GCNGC	4 cut(s)	5, 739, 962, 1095
FspBI	CTAG	1 cut(s)	681
GlaI	GCGC	1 cut(s)	728
GluI	GCNGC	4 cut(s)	5, 739, 962, 1095
GsuI	CTGGAG	2 cut(s)	93, 853
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	1 cut(s)	31
HhaI	GCGC	1 cut(s)	729
Hin1II	CATG	5 cut(s)	128, 154, 473, 856, 931
Hin6I	GCGC	1 cut(s)	727
HinP1I	GCGC	1 cut(s)	727
HinfI	GANTC	4 cut(s)	40, 154, 315, 910
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	3 cut(s)	403, 455, 605
Hpy166II	GTNNAC	2 cut(s)	395, 596
Hpy188I	TCNGA	6 cut(s)	64, 439, 444, 477, 955, 1011
Hpy188III	TCNNGA	6 cut(s)	401, 606, 721, 798, 928, 975
Hpy8I	GTNNAC	2 cut(s)	395, 596
HpyAV	CCTTC	1 cut(s)	69
HpyCH4IV	ACGT	3 cut(s)	187, 249, 272
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 466, 735, 800, 1049
HpyF3I	CTNAG	5 cut(s)	436, 719, 812, 965, 1008
HpySE526I	ACGT	3 cut(s)	187, 249, 272
Hsp92II	CATG	5 cut(s)	128, 154, 473, 856, 931
HspAI	GCGC	1 cut(s)	727
Ksp22I	TGATCA	1 cut(s)	669
LguI	GCTCTTC	1 cut(s)	951
LmnI	GCTCC	4 cut(s)	112, 759, 792, 1048
Lsp1109I	GCAGC	4 cut(s)	16, 725, 948, 1081
LweI	GCATC	3 cut(s)	155, 508, 714
MaeI	CTAG	1 cut(s)	681
MaeII	ACGT	3 cut(s)	187, 249, 272
MaeIII	GTNAC	1 cut(s)	491
MbiI	CCGCTC	1 cut(s)	787
MboII	GAAGA	6 cut(s)	61, 603, 638, 641, 905, 968
MflI	RGATCY	5 cut(s)	95, 231, 439, 608, 676
MhlI	GDGCHC	5 cut(s)	28, 437, 764, 805, 1016
MluCI	AATT	4 cut(s)	601, 621, 646, 777
MlyI	GAGTC	2 cut(s)	148, 904
MmeI	TCCRAC	2 cut(s)	639, 1070
MnlI	CCTC	8 cut(s)	30, 162, 168, 234, 306, 419, 1014, 1017
MroXI	GAANNNNTTC	1 cut(s)	949
MseI	TTAA	2 cut(s)	192, 707
MslI	CAYNNNNRTG	4 cut(s)	468, 857, 926, 932
MspA1I	CMGCKG	2 cut(s)	7, 1052
MspI	CCGG	1 cut(s)	31
Mva1269I	GAATGC	1 cut(s)	777
MvnI	CGCG	1 cut(s)	729
MwoI	GCNNNNNNNGC	5 cut(s)	23, 466, 735, 800, 1049
NlaIII	CATG	5 cut(s)	128, 154, 473, 856, 931
NlaIV	GGNNCC	3 cut(s)	97, 233, 678
NspI	RCATGY	1 cut(s)	856
PaeR7I	CTCGAG	1 cut(s)	798
PagI	TCATGA	1 cut(s)	927
PaqCI	CACCTGC	1 cut(s)	474
PceI	AGGCCT	1 cut(s)	58
PciI	ACATGT	1 cut(s)	852
PciSI	GCTCTTC	1 cut(s)	951
PcsI	WCGNNNNNNNCGW	1 cut(s)	494
PctI	GAATGC	1 cut(s)	777
PdmI	GAANNNNTTC	1 cut(s)	949
PfeI	GAWTC	2 cut(s)	40, 315
PkrI	GCNGC	4 cut(s)	6, 740, 963, 1096
PleI	GAGTC	2 cut(s)	148, 904
PpsI	GAGTC	2 cut(s)	148, 904
PscI	ACATGT	1 cut(s)	852
PsiI	TTATAA	1 cut(s)	554
Psp124BI	GAGCTC	1 cut(s)	764
PspN4I	GGNNCC	3 cut(s)	97, 233, 678
PspPI	GGNCC	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	758
PsuI	RGATCY	5 cut(s)	95, 231, 439, 608, 676
PvuII	CAGCTG	1 cut(s)	1052
RsaI	GTAC	3 cut(s)	539, 752, 828
RsaNI	GTAC	3 cut(s)	538, 751, 827
RseI	CAYNNNNRTG	4 cut(s)	468, 857, 926, 932
SacI	GAGCTC	1 cut(s)	764
SapI	GCTCTTC	1 cut(s)	951
SaqAI	TTAA	2 cut(s)	192, 707
SatI	GCNGC	4 cut(s)	5, 739, 962, 1095
Sau96I	GGNCC	1 cut(s)	452
SchI	GAGTC	2 cut(s)	148, 904
SduI	GDGCHC	5 cut(s)	28, 437, 764, 805, 1016
SfaNI	GCATC	3 cut(s)	155, 508, 714
SfcI	CTRYAG	1 cut(s)	754
Sfr274I	CTCGAG	1 cut(s)	798
SgrAI	CRCCGGYG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	452
SlaI	CTCGAG	1 cut(s)	798
SmiMI	CAYNNNNRTG	4 cut(s)	468, 857, 926, 932
SmlI	CTYRAG	1 cut(s)	798
SmoI	CTYRAG	1 cut(s)	798
Sse9I	AATT	4 cut(s)	601, 621, 646, 777
SseBI	AGGCCT	1 cut(s)	58
SsiI	CCGC	4 cut(s)	7, 28, 729, 785
SspI	AATATT	1 cut(s)	88
SspMI	CTAG	1 cut(s)	681
SstI	GAGCTC	1 cut(s)	764
StuI	AGGCCT	1 cut(s)	58
StyI	CCWWGG	2 cut(s)	865, 1017
TaiI	ACGT	3 cut(s)	190, 252, 275
TaqI	TCGA	4 cut(s)	160, 280, 516, 799
TasI	AATT	4 cut(s)	601, 621, 646, 777
TatI	WGTACW	1 cut(s)	750
TfiI	GAWTC	2 cut(s)	40, 315
Tru1I	TTAA	2 cut(s)	192, 707
Tru9I	TTAA	2 cut(s)	192, 707
TscAI	CASTG	3 cut(s)	179, 233, 539
TseI	GCWGC	4 cut(s)	4, 738, 961, 1094
TspDTI	ATGAA	3 cut(s)	651, 906, 944
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	3 cut(s)	179, 233, 539
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	1 cut(s)	601
XceI	RCATGY	1 cut(s)	856
XhoI	CTCGAG	1 cut(s)	798
XmnI	GAANNNNTTC	1 cut(s)	949
XspI	CTAG	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.