Rh4CG197100

Belongs to the glycosyltransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0007500
Physical Location & Seq
Forward (+)
42093189 .. 42094064
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG197100.1

Sequence Viewer

Length: 690 bp
ATGCCAGCATCAGAAACAGTAGAGTTTCTGGCATCAGGGAGGGTACAGGTAAATGAGTTTGATGCGTTGGTTTGTAGCAGTGGAAGTGAGGTTTACTACCCTGGTACTTATACAGAAGAAGATGGAAGACTTTTCCCAGATCCAGATTATTCGTCACACATTGACTACCGATGGGGTTGTGAAGGATTAAAGAAAACCATTTGGAAGCTCTTAAATGGCCCTGATGGTGAACGGAATTCCACATCTTCGAGCCACATTGAAGAAGATATAAAATCAAGCAGTGCCCATTGCATTTCATACTTGATCAAGGATCCTAGTAAGGCAAGGAACGTTGATGATTTAAGACAGAAACTCAGGATGCGGGGACTACGCTGCCATCCAATGTACTGCAGGAGCTCGACGCGAATGCAAATTGTTCCTCTCCTTGCTTCTCGAGCACAGGCTCTCAGGTACCTTTTCGTACGCTGGAGATTGAATGTCGCAAACATGTATGTGTTCCTTGGAGAAAGTGGAGACACTGATTATGAAGAAATGATAGCAGGGACTCACAAGACCATAATCATGAAAGGGGTGGTGGGAAAGGGTTCTGAAGAGCTGGCTAAGAACATCAGGAAGCTATCTGAGAGACGACATTGTTCCTCCTCAGAGCCCACTGGTCGCCATTGTAAATGGGCAAGCTCCAACAGCTGA

Protein Analysis

229

Amino Acids

25.93

Weight (kDa)

8.42

Isoelectric Point (pI)

54.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S6PP PF05116 17 - 200 1.1e-14 Sucrose-6F-phosphate phosphohydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 450
AccB1I GGYRCC 1 cut(s) 450
AccII CGCG 1 cut(s) 403
AciI CCGC 1 cut(s) 361
AclI AACGTT 1 cut(s) 330
AclWI GGATC 3 cut(s) 134, 305, 318
AcsI RAATTY 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 609
AfaI GTAC 5 cut(s) 45, 106, 386, 452, 462
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 2 cut(s) 260, 475
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 6 cut(s) 208, 396, 595, 616, 678, 687
AluI AGCT 6 cut(s) 208, 396, 595, 616, 678, 687
Alw21I GWGCWC 2 cut(s) 398, 439
Alw26I GTCTC 2 cut(s) 507, 619
AlwI GGATC 3 cut(s) 134, 305, 318
Ama87I CYCGRG 1 cut(s) 432
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 1 cut(s) 372
ApoI RAATTY 1 cut(s) 235
Asp700I GAANNNNTTC 1 cut(s) 583
Asp718I GGTACC 1 cut(s) 450
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 432
BaeGI GKGCMC 1 cut(s) 286
BamHI GGATCC 1 cut(s) 310
BanI GGYRCC 1 cut(s) 450
BanII GRGCYC 2 cut(s) 398, 651
BbsI GAAGAC 1 cut(s) 133
Bbv12I GWGCWC 2 cut(s) 398, 439
BbvI GCAGC 1 cut(s) 359
BccI CCATC 4 cut(s) 116, 165, 218, 384
BcgI CGANNNNNNTGC 2 cut(s) 388, 422
BciT130I CCWGG 1 cut(s) 102
BclI TGATCA 1 cut(s) 303
BcoDI GTCTC 2 cut(s) 507, 619
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 388
BisI GCNGC 1 cut(s) 373
BlsI GCNGC 1 cut(s) 374
Bme1390I CCNGG 1 cut(s) 102
BmeT110I CYCGRG 1 cut(s) 432
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 312, 452
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 4 cut(s) 17, 41, 52, 348
BpiI GAAGAC 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 487
BsaJI CCNNGG 2 cut(s) 100, 499
Bse1I ACTGG 1 cut(s) 658
Bse3DI GCAATG 1 cut(s) 286
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 2 cut(s) 100, 499
BseGI GGATG 2 cut(s) 363, 376
BseMI GCAATG 1 cut(s) 286
BseMII CTCAG 4 cut(s) 367, 460, 612, 657
BseNI ACTGG 1 cut(s) 658
BseRI GAGGAG 1 cut(s) 631
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 1 cut(s) 359
Bsh1236I CGCG 1 cut(s) 403
BshFI GGCC 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 450
BsiHKAI GWGCWC 2 cut(s) 398, 439
BsiHKCI CYCGRG 1 cut(s) 432
BsiWI CGTACG 1 cut(s) 460
BslFI GGGAC 2 cut(s) 378, 556
BsmAI GTCTC 2 cut(s) 507, 619
BsmBI CGTCTC 1 cut(s) 619
BsmFI GGGAC 2 cut(s) 378, 556
BsmI GAATGC 1 cut(s) 411
BsnI GGCC 1 cut(s) 219
BsoBI CYCGRG 1 cut(s) 432
Bsp1286I GDGCHC 4 cut(s) 286, 398, 439, 651
Bsp143I GATC 3 cut(s) 139, 303, 310
BspACI CCGC 1 cut(s) 361
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 4 cut(s) 366, 459, 613, 656
BspFNI CGCG 1 cut(s) 403
BspHI TCATGA 1 cut(s) 561
BspLI GGNNCC 2 cut(s) 312, 452
BspMAI CTGCAG 1 cut(s) 392
BspPI GGATC 3 cut(s) 134, 305, 318
BspQI GCTCTTC 1 cut(s) 585
BspT107I GGYRCC 1 cut(s) 450
BsrDI GCAATG 1 cut(s) 286
BsrI ACTGG 1 cut(s) 658
BssECI CCNNGG 2 cut(s) 100, 499
BssMI GATC 3 cut(s) 139, 303, 310
BssT1I CCWWGG 1 cut(s) 499
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 1 cut(s) 585
BstC8I GCNNGC 3 cut(s) 6, 597, 676
BstDEI CTNAG 5 cut(s) 353, 446, 600, 621, 643
BstF5I GGATG 2 cut(s) 363, 376
BstFNI CGCG 1 cut(s) 403
BstKTI GATC 3 cut(s) 142, 306, 313
BstMAI GTCTC 2 cut(s) 507, 619
BstMBI GATC 3 cut(s) 139, 303, 310
BstMWI GCNNNNNNNGC 2 cut(s) 434, 684
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 490
BstSCI CCNGG 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 388
BstSLI GKGCMC 1 cut(s) 286
BstUI CGCG 1 cut(s) 403
BstV1I GCAGC 1 cut(s) 359
BstV2I GAAGAC 1 cut(s) 133
BstX2I RGATCY 2 cut(s) 139, 310
BstYI RGATCY 2 cut(s) 139, 310
BsuRI GGCC 1 cut(s) 219
BtsCI GGATG 2 cut(s) 363, 376
BtsI GCAGTG 2 cut(s) 85, 286
BtsIMutI CAGTG 4 cut(s) 85, 286, 516, 651
Cac8I GCNNGC 3 cut(s) 6, 597, 676
CciI TCATGA 1 cut(s) 561
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 1 cut(s) 409
Csp6I GTAC 5 cut(s) 44, 105, 385, 451, 461
CviAII CATG 2 cut(s) 487, 562
CviQI GTAC 5 cut(s) 44, 105, 385, 451, 461
DdeI CTNAG 5 cut(s) 353, 446, 600, 621, 643
DpnI GATC 3 cut(s) 141, 305, 312
DpnII GATC 3 cut(s) 139, 303, 310
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
Ecl136II GAGCTC 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 499
Eco24I GRGCYC 2 cut(s) 398, 651
Eco53kI GAGCTC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 609
Eco88I CYCGRG 1 cut(s) 432
EcoICRI GAGCTC 1 cut(s) 396
EcoRI GAATTC 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 499
EcoT38I GRGCYC 2 cut(s) 398, 651
ErhI CCWWGG 1 cut(s) 499
Esp3I CGTCTC 1 cut(s) 619
FaeI CATG 2 cut(s) 490, 565
FaiI YATR 8 cut(s) 111, 269, 298, 488, 492, 525, 557, 563
FaqI GGGAC 2 cut(s) 378, 556
FatI CATG 2 cut(s) 486, 561
FauI CCCGC 1 cut(s) 354
FbaI TGATCA 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 373
FokI GGATG 2 cut(s) 363, 370
FriOI GRGCYC 2 cut(s) 398, 651
Fsp4HI GCNGC 1 cut(s) 373
FspBI CTAG 1 cut(s) 315
GluI GCNGC 1 cut(s) 373
GsuI CTGGAG 1 cut(s) 487
HaeIII GGCC 1 cut(s) 219
HgaI GACGC 1 cut(s) 409
Hin1II CATG 2 cut(s) 490, 565
HinfI GANTC 1 cut(s) 544
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 2 cut(s) 94, 230
Hpy188I TCNGA 4 cut(s) 13, 589, 622, 646
Hpy188III TCNNGA 5 cut(s) 143, 355, 432, 562, 610
Hpy8I GTNNAC 2 cut(s) 94, 230
Hpy99I CGWCG 1 cut(s) 403
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 3 cut(s) 291, 390, 409
HpyF10VI GCNNNNNNNGC 2 cut(s) 434, 684
HpyF3I CTNAG 5 cut(s) 353, 446, 600, 621, 643
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 2 cut(s) 490, 565
KpnI GGTACC 1 cut(s) 454
Ksp22I TGATCA 1 cut(s) 303
Kzo9I GATC 3 cut(s) 139, 303, 310
LguI GCTCTTC 1 cut(s) 585
LmnI GCTCC 2 cut(s) 393, 683
Lsp1109I GCAGC 1 cut(s) 359
LweI GCATC 4 cut(s) 17, 41, 52, 348
MaeI CTAG 1 cut(s) 315
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 153
MalI GATC 3 cut(s) 141, 305, 312
MboI GATC 3 cut(s) 139, 303, 310
MboII GAAGA 8 cut(s) 128, 131, 138, 237, 272, 275, 539, 602
MflI RGATCY 2 cut(s) 139, 310
MhlI GDGCHC 4 cut(s) 286, 398, 439, 651
MluCI AATT 2 cut(s) 235, 411
MlyI GAGTC 1 cut(s) 538
MnlI CCTC 5 cut(s) 33, 82, 429, 649, 652
MroXI GAANNNNTTC 1 cut(s) 583
MseI TTAA 3 cut(s) 188, 212, 341
MslI CAYNNNNRTG 2 cut(s) 491, 560
MspA1I CMGCKG 1 cut(s) 687
MspR9I CCNGG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 411
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 403
MwoI GCNNNNNNNGC 2 cut(s) 434, 684
NdeII GATC 3 cut(s) 139, 303, 310
NlaIII CATG 2 cut(s) 490, 565
NlaIV GGNNCC 2 cut(s) 312, 452
NmuCI GTSAC 1 cut(s) 153
NspI RCATGY 1 cut(s) 490
PaeR7I CTCGAG 1 cut(s) 432
PagI TCATGA 1 cut(s) 561
PciI ACATGT 1 cut(s) 486
PciSI GCTCTTC 1 cut(s) 585
PctI GAATGC 1 cut(s) 411
PdmI GAANNNNTTC 1 cut(s) 583
Pfl23II CGTACG 1 cut(s) 460
PkrI GCNGC 1 cut(s) 374
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
PscI ACATGT 1 cut(s) 486
Psp124BI GAGCTC 1 cut(s) 398
Psp1406I AACGTT 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspLI CGTACG 1 cut(s) 460
PspN4I GGNNCC 2 cut(s) 312, 452
PspPI GGNCC 1 cut(s) 218
PstI CTGCAG 1 cut(s) 392
PsuI RGATCY 2 cut(s) 139, 310
PvuII CAGCTG 1 cut(s) 687
RsaI GTAC 5 cut(s) 45, 106, 386, 452, 462
RsaNI GTAC 5 cut(s) 44, 105, 385, 451, 461
RseI CAYNNNNRTG 2 cut(s) 491, 560
SacI GAGCTC 1 cut(s) 398
SapI GCTCTTC 1 cut(s) 585
SaqAI TTAA 3 cut(s) 188, 212, 341
SatI GCNGC 1 cut(s) 373
Sau3AI GATC 3 cut(s) 139, 303, 310
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 538
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 4 cut(s) 286, 398, 439, 651
SfaNI GCATC 4 cut(s) 17, 41, 52, 348
SfcI CTRYAG 1 cut(s) 388
Sfr274I CTCGAG 1 cut(s) 432
SlaI CTCGAG 1 cut(s) 432
SmiMI CAYNNNNRTG 2 cut(s) 491, 560
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
Sse9I AATT 2 cut(s) 235, 411
SsiI CCGC 1 cut(s) 361
SspMI CTAG 1 cut(s) 315
SstI GAGCTC 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 100
StyI CCWWGG 1 cut(s) 499
TaaI ACNGT 1 cut(s) 19
TaiI ACGT 1 cut(s) 333
TaqI TCGA 3 cut(s) 248, 398, 433
TasI AATT 2 cut(s) 235, 411
TatI WGTACW 1 cut(s) 384
Tru1I TTAA 3 cut(s) 188, 212, 341
Tru9I TTAA 3 cut(s) 188, 212, 341
TscAI CASTG 4 cut(s) 85, 286, 523, 658
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 1 cut(s) 372
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 3 cut(s) 285, 540, 578
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 4 cut(s) 85, 286, 523, 658
XapI RAATTY 1 cut(s) 235
XceI RCATGY 1 cut(s) 490
XhoI CTCGAG 1 cut(s) 432
XmnI GAANNNNTTC 1 cut(s) 583
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.