Rh7AG341000

Belongs to the glycosyltransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0007500
Physical Location & Seq
Reverse (-)
43046498 .. 43047513
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG341000.1

Sequence Viewer

Length: 735 bp
ATGATTCAAATTGTGCCAGAAATATTTAAGGCTGTAAGACTAGATTCTCAAAGTGCAAGATTTACAGGGTTTGCTCTGCTAACAGCTATGCCAGCATCAGAAACAGTAGAGTTTCTGGCATCAGGGAGGGTACAGGCAAATGCCTTGGTTTGTAGCAGTGGAAGTGAGGTTTACTACCCTGAAAGAAAACCATTTGGAAGGCTCTTAAATGGCCCTGATGGTGAACGGAATTCCACATCTTCGAGCCACATTGAAGAAGATATAAAATCAAGCAGTGCCCATTGCATTTCATACTTCATCAAGGATCCTAGTAAGGCAAGGAAAGTTGATGATTTAAGACAGAAACTCAGGATGCAGGGACTACGCTGCCATCCAATGTACTGCAGGAGCTCAACGCGAATGCAAATTGTTCCTCTCCTTGCTTCTCGAGCACAGGCTCTCAGGTACCTTTTCGTACGCTGGAGATTGAATGTCGCAAACATGTATGTGTTCCTTGGAGAAAGTGGAGACACTGATTATGAAGAAATGATAGCAGGGACTCACAAGACCATAATCATGAAAGGGGTGGTGGGAAATGGTTCTGAAGAGCTGCTAAGAACATCAGGAAGCTATCTGGGAGACGACATTGTTCCTCCTCAGAGCCCACTGGTCACCATTGTAAATGGGCAAGCTCCAACAGCTGATGAGATTGCCACTGCTCTGAAGCAAGTCACCAAATCTGCTGCTGGAATGTGA

Protein Analysis

244

Amino Acids

26.81

Weight (kDa)

8.64

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S6PP PF05116 90 - 200 8.3e-13 Sucrose-6F-phosphate phosphohydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 444
AccB1I GGYRCC 1 cut(s) 444
AccII CGCG 1 cut(s) 397
AclWI GGATC 2 cut(s) 299, 312
AcsI RAATTY 1 cut(s) 229
AcuI CTGAAG 2 cut(s) 603, 722
AfaI GTAC 4 cut(s) 132, 380, 446, 456
AflIII ACRYGT 1 cut(s) 480
AgsI TTSAA 3 cut(s) 8, 254, 469
AluBI AGCT 6 cut(s) 86, 390, 589, 609, 671, 680
AluI AGCT 6 cut(s) 86, 390, 589, 609, 671, 680
Alw21I GWGCWC 2 cut(s) 392, 433
Alw26I GTCTC 2 cut(s) 501, 612
AlwI GGATC 2 cut(s) 299, 312
Ama87I CYCGRG 1 cut(s) 426
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 3 cut(s) 366, 589, 722
ApoI RAATTY 1 cut(s) 229
Asp700I GAANNNNTTC 1 cut(s) 577
Asp718I GGTACC 1 cut(s) 444
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 3 cut(s) 233, 643, 703
AvaI CYCGRG 1 cut(s) 426
BaeGI GKGCMC 1 cut(s) 280
BamHI GGATCC 1 cut(s) 304
BanI GGYRCC 1 cut(s) 444
BanII GRGCYC 2 cut(s) 392, 644
Bbv12I GWGCWC 2 cut(s) 392, 433
BbvI GCAGC 3 cut(s) 353, 576, 709
BccI CCATC 2 cut(s) 212, 378
BcoDI GTCTC 2 cut(s) 501, 612
BfaI CTAG 2 cut(s) 41, 309
BfmI CTRYAG 1 cut(s) 382
BisI GCNGC 3 cut(s) 367, 590, 723
BlsI GCNGC 3 cut(s) 368, 591, 724
BmeT110I CYCGRG 1 cut(s) 426
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 2 cut(s) 306, 446
BmsI GCATC 3 cut(s) 104, 128, 342
BpmI CTGGAG 1 cut(s) 481
BsaJI CCNNGG 2 cut(s) 144, 493
Bse1I ACTGG 1 cut(s) 651
Bse3DI GCAATG 1 cut(s) 280
BseDI CCNNGG 2 cut(s) 144, 493
BseGI GGATG 2 cut(s) 357, 370
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 3 cut(s) 361, 454, 650
BseNI ACTGG 1 cut(s) 651
BseRI GAGGAG 1 cut(s) 624
BseSI GKGCMC 1 cut(s) 280
BseXI GCAGC 3 cut(s) 353, 576, 709
Bsh1236I CGCG 1 cut(s) 397
BshFI GGCC 1 cut(s) 213
BshNI GGYRCC 1 cut(s) 444
BsiHKAI GWGCWC 2 cut(s) 392, 433
BsiHKCI CYCGRG 1 cut(s) 426
BsiWI CGTACG 1 cut(s) 454
BslFI GGGAC 2 cut(s) 372, 550
BsmAI GTCTC 2 cut(s) 501, 612
BsmBI CGTCTC 1 cut(s) 612
BsmFI GGGAC 2 cut(s) 372, 550
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 1 cut(s) 213
BsoBI CYCGRG 1 cut(s) 426
Bsp1286I GDGCHC 4 cut(s) 280, 392, 433, 644
Bsp143I GATC 1 cut(s) 304
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 3 cut(s) 360, 453, 649
BspFNI CGCG 1 cut(s) 397
BspHI TCATGA 1 cut(s) 555
BspLI GGNNCC 2 cut(s) 306, 446
BspMAI CTGCAG 1 cut(s) 386
BspPI GGATC 2 cut(s) 299, 312
BspQI GCTCTTC 1 cut(s) 579
BspT107I GGYRCC 1 cut(s) 444
BsrDI GCAATG 1 cut(s) 280
BsrI ACTGG 1 cut(s) 651
BssECI CCNNGG 2 cut(s) 144, 493
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 2 cut(s) 144, 493
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 579
BstC8I GCNNGC 2 cut(s) 93, 669
BstDEI CTNAG 4 cut(s) 347, 440, 593, 636
BstEII GGTNACC 1 cut(s) 649
BstF5I GGATG 2 cut(s) 357, 370
BstFNI CGCG 1 cut(s) 397
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 2 cut(s) 501, 612
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 3 cut(s) 92, 428, 677
BstNSI RCATGY 1 cut(s) 484
BstPI GGTNACC 1 cut(s) 649
BstSFI CTRYAG 1 cut(s) 382
BstSLI GKGCMC 1 cut(s) 280
BstUI CGCG 1 cut(s) 397
BstV1I GCAGC 3 cut(s) 353, 576, 709
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuRI GGCC 1 cut(s) 213
BtsCI GGATG 2 cut(s) 357, 370
BtsI GCAGTG 3 cut(s) 163, 280, 693
BtsIMutI CAGTG 5 cut(s) 163, 280, 510, 644, 693
Cac8I GCNNGC 2 cut(s) 93, 669
CciI TCATGA 1 cut(s) 555
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 4 cut(s) 131, 379, 445, 455
CviAII CATG 2 cut(s) 481, 556
CviQI GTAC 4 cut(s) 131, 379, 445, 455
DdeI CTNAG 4 cut(s) 347, 440, 593, 636
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 579
Ecl136II GAGCTC 1 cut(s) 390
Eco130I CCWWGG 2 cut(s) 144, 493
Eco24I GRGCYC 2 cut(s) 392, 644
Eco53kI GAGCTC 1 cut(s) 390
Eco57I CTGAAG 2 cut(s) 603, 722
Eco88I CYCGRG 1 cut(s) 426
Eco91I GGTNACC 1 cut(s) 649
EcoICRI GAGCTC 1 cut(s) 390
EcoO65I GGTNACC 1 cut(s) 649
EcoRI GAATTC 1 cut(s) 229
EcoT14I CCWWGG 2 cut(s) 144, 493
EcoT38I GRGCYC 2 cut(s) 392, 644
ErhI CCWWGG 2 cut(s) 144, 493
Esp3I CGTCTC 1 cut(s) 612
FaeI CATG 2 cut(s) 484, 559
FaiI YATR 8 cut(s) 89, 263, 292, 482, 486, 519, 551, 557
FaqI GGGAC 2 cut(s) 372, 550
FatI CATG 2 cut(s) 480, 555
Fnu4HI GCNGC 3 cut(s) 367, 590, 723
FokI GGATG 2 cut(s) 357, 364
FriOI GRGCYC 2 cut(s) 392, 644
Fsp4HI GCNGC 3 cut(s) 367, 590, 723
FspBI CTAG 2 cut(s) 41, 309
GluI GCNGC 3 cut(s) 367, 590, 723
GsuI CTGGAG 1 cut(s) 481
HaeIII GGCC 1 cut(s) 213
Hin1II CATG 2 cut(s) 484, 559
HinfI GANTC 3 cut(s) 4, 44, 538
HphI GGTGA 3 cut(s) 233, 643, 703
Hpy166II GTNNAC 2 cut(s) 172, 224
Hpy188I TCNGA 4 cut(s) 100, 583, 639, 702
Hpy188III TCNNGA 4 cut(s) 349, 426, 556, 603
Hpy8I GTNNAC 2 cut(s) 172, 224
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 5 cut(s) 56, 285, 355, 384, 403
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 428, 677
HpyF3I CTNAG 4 cut(s) 347, 440, 593, 636
Hsp92II CATG 2 cut(s) 484, 559
KpnI GGTACC 1 cut(s) 448
Kzo9I GATC 1 cut(s) 304
LguI GCTCTTC 1 cut(s) 579
LmnI GCTCC 2 cut(s) 387, 676
Lsp1109I GCAGC 3 cut(s) 353, 576, 709
LweI GCATC 3 cut(s) 104, 128, 342
MaeI CTAG 2 cut(s) 41, 309
MaeIII GTNAC 2 cut(s) 649, 709
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 5 cut(s) 231, 266, 269, 533, 596
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 4 cut(s) 280, 392, 433, 644
MluCI AATT 3 cut(s) 9, 229, 405
MlyI GAGTC 1 cut(s) 532
MmeI TCCRAC 1 cut(s) 698
MnlI CCTC 5 cut(s) 120, 160, 423, 642, 645
MroXI GAANNNNTTC 1 cut(s) 577
MseI TTAA 3 cut(s) 27, 206, 335
MslI CAYNNNNRTG 2 cut(s) 485, 554
MspA1I CMGCKG 1 cut(s) 680
Mva1269I GAATGC 1 cut(s) 405
MvnI CGCG 1 cut(s) 397
MwoI GCNNNNNNNGC 3 cut(s) 92, 428, 677
NdeII GATC 1 cut(s) 304
NlaIII CATG 2 cut(s) 484, 559
NlaIV GGNNCC 2 cut(s) 306, 446
NmuCI GTSAC 2 cut(s) 649, 709
NspI RCATGY 1 cut(s) 484
PaeR7I CTCGAG 1 cut(s) 426
PagI TCATGA 1 cut(s) 555
PciI ACATGT 1 cut(s) 480
PciSI GCTCTTC 1 cut(s) 579
PctI GAATGC 1 cut(s) 405
PdmI GAANNNNTTC 1 cut(s) 577
PfeI GAWTC 2 cut(s) 4, 44
Pfl23II CGTACG 1 cut(s) 454
PkrI GCNGC 3 cut(s) 368, 591, 724
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
PscI ACATGT 1 cut(s) 480
Psp124BI GAGCTC 1 cut(s) 392
PspEI GGTNACC 1 cut(s) 649
PspLI CGTACG 1 cut(s) 454
PspN4I GGNNCC 2 cut(s) 306, 446
PspPI GGNCC 1 cut(s) 212
PstI CTGCAG 1 cut(s) 386
PsuI RGATCY 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 680
RsaI GTAC 4 cut(s) 132, 380, 446, 456
RsaNI GTAC 4 cut(s) 131, 379, 445, 455
RseI CAYNNNNRTG 2 cut(s) 485, 554
SacI GAGCTC 1 cut(s) 392
SapI GCTCTTC 1 cut(s) 579
SaqAI TTAA 3 cut(s) 27, 206, 335
SatI GCNGC 3 cut(s) 367, 590, 723
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 1 cut(s) 532
SduI GDGCHC 4 cut(s) 280, 392, 433, 644
SetI ASST 9 cut(s) 88, 171, 392, 446, 450, 591, 611, 673, 682
SfaNI GCATC 3 cut(s) 104, 128, 342
SfcI CTRYAG 1 cut(s) 382
Sfr274I CTCGAG 1 cut(s) 426
SlaI CTCGAG 1 cut(s) 426
SmiMI CAYNNNNRTG 2 cut(s) 485, 554
SmlI CTYRAG 1 cut(s) 426
SmoI CTYRAG 1 cut(s) 426
Sse9I AATT 3 cut(s) 9, 229, 405
SspI AATATT 1 cut(s) 24
SspMI CTAG 2 cut(s) 41, 309
SstI GAGCTC 1 cut(s) 392
StyI CCWWGG 2 cut(s) 144, 493
TaaI ACNGT 1 cut(s) 106
TaqI TCGA 2 cut(s) 242, 427
TasI AATT 3 cut(s) 9, 229, 405
TatI WGTACW 1 cut(s) 378
TfiI GAWTC 2 cut(s) 4, 44
Tru1I TTAA 3 cut(s) 27, 206, 335
Tru9I TTAA 3 cut(s) 27, 206, 335
TscAI CASTG 5 cut(s) 163, 280, 517, 651, 700
TseFI GTSAC 2 cut(s) 649, 709
TseI GCWGC 3 cut(s) 366, 589, 722
Tsp45I GTSAC 2 cut(s) 649, 709
TspDTI ATGAA 4 cut(s) 279, 286, 534, 572
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 5 cut(s) 163, 280, 517, 651, 700
XapI RAATTY 1 cut(s) 229
XceI RCATGY 1 cut(s) 484
XhoI CTCGAG 1 cut(s) 426
XmnI GAANNNNTTC 1 cut(s) 577
XspI CTAG 2 cut(s) 41, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.