RLG00000008164

Belongs to the glycosyltransferase 1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
26397480 .. 26400123
2644 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008164

Sequence Viewer

Length: 1083 bp
ATGGGAGACCTCGCCGTTACTTCCAAGGGGGGCCCCAAGCTCCCCCTCCCCGGCCAACGCAATGTCCTCATCACCAGCGCGTTGCCGTACGTCAACAACGTCCCTCATCTCGGCAACATCATCGGCTGCGTTCTCAGCGCCGACGTCTTCGCTCGCTACTGCCGTCTCCGGGATACAACACCGTCTATATCTGCGGCACCGATGAGTACGGCACCACCACCGAGACCAAAGCCCTGCAGGAGAAGTGTAGCCCCAAGGAGATCTGCGATAACCGACAGGCTCGTGGAAGGGACATGCCCAACTCAGGGTTGTGATTATACTTCTGCAAGAGGAGACCAGTGTGAGAACTGTGGGAAGCTTTTAAACCCCACAGAATTAAAGGATCCGAAGTGCAAGTTTGATGCGCCTATTGGATATGTTTCAATTACTAAATGCTACACGCCTACACTCCAGATTGGGAGAAATGGTGGAAGAATCCAGAGGACATGGAGTTGTATTAGTTTATGGGCAAAGATAATGAGCCATCCACACGAAGAAGATGGAAGACTTTTCCCAGGTCCAGATTATTCGTCACACATGGACTACCGATGGGGTTGTGAAGGACTAAAGAAAACCGTTTGGAAGCTCTTAAATGGCCCTGATGGTGAGCGGAATTCCGCATCTTCAAGCCACATTGAAGAAGATATAAAATCAAGCAGTGCCAATTGCATCTCATACTTAATCAAGGATCCTAGTAAGGCAAGGAAATTTGATGACTTAAGACAGAAACTCAGGATGCGGGGACTACACTGCCATCCAATGTACTGCAGGAGCTCAACGCGAATGCAAATTGCTCCTCTCCTTGCTTTCCGAGCACAGGCTCTCAGGTACCTTTTTGTACGGTGGAGATTGAATGTTGCAAACATGTATGTGTTCCTTGGAGAAAGTGGAGACACCAATTATGAAGAAATGATAGCAGGGACTCACAAGACCATATTCATAAAGGGGGTGGTGGGAAAGGGTTCTGAAGAGCTGCTAAGAACATCAGGAAGCTACCTGGGAGACGACATTTTCCTCCTCAAAGCCCACTGGTCGCCATTGTAA

Protein Analysis

361

Amino Acids

40.07

Weight (kDa)

9.3

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1g PF09334 22 - 58 3.3e-10 tRNA synthetases class I (M)
tRNA-synt_1g PF09334 89 - 132 1.5e-10 tRNA synthetases class I (M)
S6PP PF05116 237 - 340 7.3e-08 Sucrose-6F-phosphate phosphohydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 147
Acc65I GGTACC 1 cut(s) 867
AccB1I GGYRCC 3 cut(s) 196, 211, 867
AccBSI CCGCTC 1 cut(s) 649
AccII CGCG 2 cut(s) 80, 820
AciI CCGC 4 cut(s) 194, 649, 657, 778
AclWI GGATC 4 cut(s) 377, 390, 722, 735
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 2 cut(s) 652, 746
AcuI CTGAAG 1 cut(s) 1026
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 5 cut(s) 89, 208, 803, 869, 879
AfiI CCNNNNNNNGG 6 cut(s) 50, 110, 169, 304, 305, 856
AflII CTTAAG 1 cut(s) 757
AflIII ACRYGT 1 cut(s) 903
AgsI TTSAA 4 cut(s) 423, 666, 677, 892
AjnI CCWGG 2 cut(s) 553, 1035
AluBI AGCT 6 cut(s) 40, 358, 625, 813, 1012, 1032
AluI AGCT 6 cut(s) 40, 358, 625, 813, 1012, 1032
Alw21I GWGCWC 2 cut(s) 815, 856
Alw26I GTCTC 5 cut(s) 170, 217, 327, 924, 1035
AlwI GGATC 4 cut(s) 377, 390, 722, 735
AoxI GGCC 3 cut(s) 31, 52, 634
ApaI GGGCCC 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 126, 1012
ApoI RAATTY 2 cut(s) 652, 746
Asp700I GAANNNNTTC 1 cut(s) 1000
Asp718I GGTACC 1 cut(s) 867
AspLEI GCGC 3 cut(s) 80, 140, 406
AspS9I GGNCC 4 cut(s) 31, 32, 557, 635
AsuC2I CCSGG 2 cut(s) 51, 170
AsuHPI GGTGA 2 cut(s) 64, 656
AvaII GGWCC 1 cut(s) 557
BaeGI GKGCMC 1 cut(s) 35
BamHI GGATCC 2 cut(s) 382, 727
BanI GGYRCC 3 cut(s) 196, 211, 867
BanII GRGCYC 2 cut(s) 35, 815
BauI CACGAG 1 cut(s) 281
BbsI GAAGAC 2 cut(s) 139, 550
Bbv12I GWGCWC 2 cut(s) 815, 856
BbvI GCAGC 2 cut(s) 113, 999
BccI CCATC 5 cut(s) 531, 533, 582, 635, 801
BceAI ACGGC 3 cut(s) 70, 147, 225
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 2 cut(s) 555, 1037
BciVI GTATCC 1 cut(s) 166
BcnI CCSGG 2 cut(s) 51, 170
BcoDI GTCTC 5 cut(s) 170, 217, 327, 924, 1035
BfaI CTAG 1 cut(s) 732
BfmI CTRYAG 2 cut(s) 235, 805
BfoI RGCGCY 1 cut(s) 141
BfrI CTTAAG 1 cut(s) 757
BfuI GTATCC 1 cut(s) 166
BglII AGATCT 1 cut(s) 260
BisI GCNGC 3 cut(s) 127, 195, 1013
BlsI GCNGC 3 cut(s) 128, 196, 1014
Bme1390I CCNGG 4 cut(s) 51, 170, 555, 1037
Bme18I GGWCC 1 cut(s) 557
BmgT120I GGNCC 4 cut(s) 31, 32, 557, 635
BmiI GGNNCC 8 cut(s) 32, 33, 34, 198, 213, 384, 729, 869
BmrFI CCNGG 4 cut(s) 51, 170, 555, 1037
BmsI GCATC 4 cut(s) 391, 668, 717, 765
BpiI GAAGAC 2 cut(s) 139, 550
BpmI CTGGAG 1 cut(s) 434
BpuMI CCSGG 2 cut(s) 51, 170
BsaHI GRCGYC 1 cut(s) 144
BsaI GGTCTC 2 cut(s) 217, 327
BsaJI CCNNGG 6 cut(s) 24, 49, 254, 553, 916, 1036
BsaXI ACNNNNNCTCC 2 cut(s) 451, 481
Bsc4I CCNNNNNNNGG 6 cut(s) 50, 110, 169, 304, 305, 856
Bse1I ACTGG 2 cut(s) 337, 1073
Bse3DI GCAATG 1 cut(s) 67
BseBI CCWGG 2 cut(s) 555, 1037
BseDI CCNNGG 6 cut(s) 24, 49, 254, 553, 916, 1036
BseGI GGATG 3 cut(s) 523, 780, 793
BseLI CCNNNNNNNGG 6 cut(s) 50, 110, 169, 304, 305, 856
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 4 cut(s) 148, 317, 784, 877
BseNI ACTGG 2 cut(s) 337, 1073
BseRI GAGGAG 3 cut(s) 345, 825, 1046
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 2 cut(s) 113, 999
Bsh1236I CGCG 2 cut(s) 80, 820
BshFI GGCC 3 cut(s) 33, 54, 636
BshNI GGYRCC 3 cut(s) 196, 211, 867
BsiHKAI GWGCWC 2 cut(s) 815, 856
BsiSI CCGG 2 cut(s) 51, 169
BsiWI CGTACG 1 cut(s) 87
BslFI GGGAC 4 cut(s) 86, 304, 795, 973
BslI CCNNNNNNNGG 6 cut(s) 50, 110, 169, 304, 305, 856
BsmAI GTCTC 5 cut(s) 170, 217, 327, 924, 1035
BsmBI CGTCTC 2 cut(s) 170, 1035
BsmFI GGGAC 4 cut(s) 86, 304, 795, 973
BsmI GAATGC 1 cut(s) 828
BsnI GGCC 3 cut(s) 33, 54, 636
Bso31I GGTCTC 2 cut(s) 217, 327
Bsp120I GGGCCC 1 cut(s) 31
Bsp1286I GDGCHC 3 cut(s) 35, 815, 856
Bsp143I GATC 3 cut(s) 260, 382, 727
BspACI CCGC 4 cut(s) 194, 649, 657, 778
BspANI GGCC 3 cut(s) 33, 54, 636
BspCNI CTCAG 4 cut(s) 147, 316, 783, 876
BspFNI CGCG 2 cut(s) 80, 820
BspLI GGNNCC 8 cut(s) 32, 33, 34, 198, 213, 384, 729, 869
BspMAI CTGCAG 2 cut(s) 239, 809
BspPI GGATC 4 cut(s) 377, 390, 722, 735
BspQI GCTCTTC 1 cut(s) 1002
BspT107I GGYRCC 3 cut(s) 196, 211, 867
BspTI CTTAAG 1 cut(s) 757
BspTNI GGTCTC 2 cut(s) 217, 327
BsrBI CCGCTC 1 cut(s) 649
BsrDI GCAATG 1 cut(s) 67
BsrI ACTGG 2 cut(s) 337, 1073
BssECI CCNNGG 6 cut(s) 24, 49, 254, 553, 916, 1036
BssMI GATC 3 cut(s) 260, 382, 727
BssNI GRCGYC 1 cut(s) 144
BssSI CACGAG 1 cut(s) 281
BssT1I CCWWGG 3 cut(s) 24, 254, 916
Bst2BI CACGAG 1 cut(s) 281
Bst2UI CCWGG 2 cut(s) 555, 1037
Bst4CI ACNGT 4 cut(s) 183, 350, 616, 882
Bst6I CTCTTC 1 cut(s) 1002
BstACI GRCGYC 1 cut(s) 144
BstAFI CTTAAG 1 cut(s) 757
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 5 cut(s) 134, 303, 770, 863, 1016
BstF5I GGATG 3 cut(s) 523, 780, 793
BstFNI CGCG 2 cut(s) 80, 820
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 3 cut(s) 80, 140, 406
BstKTI GATC 3 cut(s) 263, 385, 730
BstMAI GTCTC 5 cut(s) 170, 217, 327, 924, 1035
BstMBI GATC 3 cut(s) 260, 382, 727
BstMWI GCNNNNNNNGC 2 cut(s) 135, 851
BstNI CCWGG 2 cut(s) 555, 1037
BstNSI RCATGY 2 cut(s) 297, 907
BstSCI CCNGG 4 cut(s) 49, 168, 553, 1035
BstSFI CTRYAG 2 cut(s) 235, 805
BstSLI GKGCMC 1 cut(s) 35
BstUI CGCG 2 cut(s) 80, 820
BstV1I GCAGC 2 cut(s) 113, 999
BstV2I GAAGAC 2 cut(s) 139, 550
BstX2I RGATCY 3 cut(s) 260, 382, 727
BstYI RGATCY 3 cut(s) 260, 382, 727
BsuI GTATCC 1 cut(s) 166
BsuRI GGCC 3 cut(s) 33, 54, 636
BtsCI GGATG 3 cut(s) 523, 780, 793
BtsI GCAGTG 2 cut(s) 703, 787
BtsIMutI CAGTG 4 cut(s) 344, 703, 787, 1066
Cac8I GCNNGC 1 cut(s) 154
CfoI GCGC 3 cut(s) 80, 140, 406
Cfr13I GGNCC 4 cut(s) 31, 32, 557, 635
Csp6I GTAC 5 cut(s) 88, 207, 802, 868, 878
CviAII CATG 4 cut(s) 294, 486, 577, 904
CviQI GTAC 5 cut(s) 88, 207, 802, 868, 878
DdeI CTNAG 5 cut(s) 134, 303, 770, 863, 1016
DpnI GATC 3 cut(s) 262, 384, 729
DpnII GATC 3 cut(s) 260, 382, 727
DraI TTTAAA 1 cut(s) 363
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 1002
EarI CTCTTC 1 cut(s) 1002
Ecl136II GAGCTC 1 cut(s) 813
Eco130I CCWWGG 3 cut(s) 24, 254, 916
Eco24I GRGCYC 2 cut(s) 35, 815
Eco31I GGTCTC 2 cut(s) 217, 327
Eco47I GGWCC 1 cut(s) 557
Eco53kI GAGCTC 1 cut(s) 813
Eco57I CTGAAG 1 cut(s) 1026
EcoICRI GAGCTC 1 cut(s) 813
EcoO109I RGGNCCY 2 cut(s) 31, 32
EcoRI GAATTC 1 cut(s) 652
EcoRII CCWGG 2 cut(s) 553, 1035
EcoT14I CCWWGG 3 cut(s) 24, 254, 916
EcoT38I GRGCYC 2 cut(s) 35, 815
ErhI CCWWGG 3 cut(s) 24, 254, 916
Esp3I CGTCTC 2 cut(s) 170, 1035
FaeI CATG 4 cut(s) 297, 489, 580, 907
FaqI GGGAC 4 cut(s) 86, 304, 795, 973
FatI CATG 4 cut(s) 293, 485, 576, 903
FauI CCCGC 1 cut(s) 771
Fnu4HI GCNGC 3 cut(s) 127, 195, 1013
FokI GGATG 3 cut(s) 510, 780, 787
FriOI GRGCYC 2 cut(s) 35, 815
Fsp4HI GCNGC 3 cut(s) 127, 195, 1013
FspBI CTAG 1 cut(s) 732
GlaI GCGC 3 cut(s) 79, 139, 405
GluI GCNGC 3 cut(s) 127, 195, 1013
GsuI CTGGAG 1 cut(s) 434
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 3 cut(s) 33, 54, 636
HapII CCGG 2 cut(s) 51, 169
HhaI GCGC 3 cut(s) 80, 140, 406
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 4 cut(s) 297, 489, 580, 907
Hin6I GCGC 3 cut(s) 78, 138, 404
HinP1I GCGC 3 cut(s) 78, 138, 404
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 2 cut(s) 474, 961
HpaII CCGG 2 cut(s) 51, 169
HphI GGTGA 2 cut(s) 64, 656
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 3 cut(s) 387, 851, 1006
Hpy188III TCNNGA 5 cut(s) 451, 478, 560, 772, 1026
Hpy8I GTNNAC 1 cut(s) 94
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 281, 593
HpyCH4III ACNGT 4 cut(s) 183, 350, 616, 882
HpyCH4IV ACGT 3 cut(s) 90, 99, 144
HpyCH4V TGCA 7 cut(s) 237, 326, 393, 708, 807, 826, 899
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 851
HpyF3I CTNAG 5 cut(s) 134, 303, 770, 863, 1016
HpySE526I ACGT 3 cut(s) 90, 99, 144
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 4 cut(s) 297, 489, 580, 907
HspAI GCGC 3 cut(s) 78, 138, 404
KpnI GGTACC 1 cut(s) 871
Kzo9I GATC 3 cut(s) 260, 382, 727
LguI GCTCTTC 1 cut(s) 1002
LmnI GCTCC 3 cut(s) 45, 810, 838
Lsp1109I GCAGC 2 cut(s) 113, 999
LweI GCATC 4 cut(s) 391, 668, 717, 765
MaeI CTAG 1 cut(s) 732
MaeII ACGT 3 cut(s) 90, 99, 144
MaeIII GTNAC 2 cut(s) 16, 570
MalI GATC 3 cut(s) 262, 384, 729
MbiI CCGCTC 1 cut(s) 649
MboI GATC 3 cut(s) 260, 382, 727
MfeI CAATTG 1 cut(s) 703
MflI RGATCY 3 cut(s) 260, 382, 727
MhlI GDGCHC 3 cut(s) 35, 815, 856
MluCI AATT 7 cut(s) 374, 423, 652, 703, 746, 828, 937
MlyI GAGTC 1 cut(s) 955
MnlI CCTC 9 cut(s) 20, 56, 77, 114, 323, 474, 846, 1064, 1067
MroXI GAANNNNTTC 1 cut(s) 1000
MseI TTAA 5 cut(s) 362, 377, 629, 719, 758
MslI CAYNNNNRTG 1 cut(s) 908
MspCI CTTAAG 1 cut(s) 757
MspI CCGG 2 cut(s) 51, 169
MspR9I CCNGG 4 cut(s) 51, 170, 555, 1037
MunI CAATTG 1 cut(s) 703
Mva1269I GAATGC 1 cut(s) 828
MvaI CCWGG 2 cut(s) 555, 1037
MvnI CGCG 2 cut(s) 80, 820
MwoI GCNNNNNNNGC 2 cut(s) 135, 851
NciI CCSGG 2 cut(s) 51, 170
NdeII GATC 3 cut(s) 260, 382, 727
NlaIII CATG 4 cut(s) 297, 489, 580, 907
NlaIV GGNNCC 8 cut(s) 32, 33, 34, 198, 213, 384, 729, 869
NmeAIII GCCGAG 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 570
NspI RCATGY 2 cut(s) 297, 907
PciI ACATGT 1 cut(s) 903
PciSI GCTCTTC 1 cut(s) 1002
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 160
PctI GAATGC 1 cut(s) 828
PdmI GAANNNNTTC 1 cut(s) 1000
PfeI GAWTC 1 cut(s) 474
Pfl23II CGTACG 1 cut(s) 87
PfoI TCCNGGA 1 cut(s) 168
PkrI GCNGC 3 cut(s) 128, 196, 1014
PleI GAGTC 1 cut(s) 955
PpsI GAGTC 1 cut(s) 955
PscI ACATGT 1 cut(s) 903
Psp124BI GAGCTC 1 cut(s) 815
Psp6I CCWGG 2 cut(s) 553, 1035
PspGI CCWGG 2 cut(s) 553, 1035
PspLI CGTACG 1 cut(s) 87
PspN4I GGNNCC 8 cut(s) 32, 33, 34, 198, 213, 384, 729, 869
PspOMI GGGCCC 1 cut(s) 31
PspPI GGNCC 4 cut(s) 31, 32, 557, 635
PstI CTGCAG 2 cut(s) 239, 809
PsuI RGATCY 3 cut(s) 260, 382, 727
RsaI GTAC 5 cut(s) 89, 208, 803, 869, 879
RsaNI GTAC 5 cut(s) 88, 207, 802, 868, 878
RseI CAYNNNNRTG 1 cut(s) 908
SacI GAGCTC 1 cut(s) 815
SapI GCTCTTC 1 cut(s) 1002
SaqAI TTAA 5 cut(s) 362, 377, 629, 719, 758
SatI GCNGC 3 cut(s) 127, 195, 1013
Sau3AI GATC 3 cut(s) 260, 382, 727
Sau96I GGNCC 4 cut(s) 31, 32, 557, 635
SbfI CCTGCAGG 1 cut(s) 239
SchI GAGTC 1 cut(s) 955
ScrFI CCNGG 4 cut(s) 51, 170, 555, 1037
SdaI CCTGCAGG 1 cut(s) 239
SduI GDGCHC 3 cut(s) 35, 815, 856
SfaNI GCATC 4 cut(s) 391, 668, 717, 765
SfcI CTRYAG 2 cut(s) 235, 805
SinI GGWCC 1 cut(s) 557
SmiMI CAYNNNNRTG 1 cut(s) 908
SmlI CTYRAG 1 cut(s) 757
SmoI CTYRAG 1 cut(s) 757
Sse8387I CCTGCAGG 1 cut(s) 239
Sse9I AATT 7 cut(s) 374, 423, 652, 703, 746, 828, 937
SsiI CCGC 4 cut(s) 194, 649, 657, 778
SspMI CTAG 1 cut(s) 732
SstI GAGCTC 1 cut(s) 815
StyD4I CCNGG 4 cut(s) 49, 168, 553, 1035
StyI CCWWGG 3 cut(s) 24, 254, 916
TaaI ACNGT 4 cut(s) 183, 350, 616, 882
TaiI ACGT 3 cut(s) 93, 102, 147
TasI AATT 7 cut(s) 374, 423, 652, 703, 746, 828, 937
TatI WGTACW 1 cut(s) 801
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 1 cut(s) 474
Tru1I TTAA 5 cut(s) 362, 377, 629, 719, 758
Tru9I TTAA 5 cut(s) 362, 377, 629, 719, 758
TscAI CASTG 4 cut(s) 344, 703, 794, 1073
TseFI GTSAC 1 cut(s) 570
TseI GCWGC 2 cut(s) 126, 1012
Tsp45I GTSAC 1 cut(s) 570
TspDTI ATGAA 2 cut(s) 957, 967
TspRI CASTG 4 cut(s) 344, 703, 794, 1073
Vha464I CTTAAG 1 cut(s) 757
VpaK11BI GGWCC 1 cut(s) 557
XapI RAATTY 2 cut(s) 652, 746
XceI RCATGY 2 cut(s) 297, 907
XmnI GAANNNNTTC 1 cut(s) 1000
XspI CTAG 1 cut(s) 732
ZraI GACGTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.