Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000808.1

Orthogroup ID

OG0007500

Physical Location & Seq

Genomic Coordinates Reverse (-)

119315 .. 120642

Gene Structure 1328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000808.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

atgtctcttaaggacgtgcaagatatgtctcttaggctctcagttgatggggacaaatcctcactgaatgaatctctggatgtgactgcagcttctggtgaccatgaggtgcaagatcaagtgaagcgtgtcctaagcaagatcaagataccagattctggtccaaaagaccatgaagaaggaaataagctgccggataatgtagcaagcaaatatcccttgttaagacgtagaagaaaattgattgtcatagcacttgattgctatgacaaatctggatctcctgaaaagaaaatgattcaagttgtgcaagaaatatttaaggctgtaagactagattctcaaagtgcaagatttacagggtttgctctgctaacagccatgccagcatcagaaacagtagagtttctggcatcagggaacagtggaagtgaggtttactaccctggtacttatacagaagaagatggaagacttttcccagatccagattattctgcgaggaaagttgatgatttaagacagaaactcaggatgcggagactacgctgccatccaatgtattgcaggagctcaacgcgaatgcaaattgttcctctccttgcttctcgagcacaggctctcaggtaccttttcgtacgctggagattgaatgtcgcaaacatgtatgtgtttcttggagaaagtggagacactgattatgaagaaatgatagcaggaactcacaagactataatcatgaaaggggtggtgggaaagggttctgaagagctgctaagaacatcaggaagctatctgagagatgacattgttcctcctcagagcccactggtcgccattgtaaatgggcaagctccaacagctgatgagattgccactactctgaagcaagtcaccaaatctgctgctggaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046524 GO:0046527

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

305

Amino Acids

33.97

Weight (kDa)

8.6

Isoelectric Point (pI)

52.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007500)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13520 FvH4_4g13520 FvH4_6g47971 FvH4_6g47972 FvH4_6g48814
rosa_laevigata	RLG00000008161 RLG00000008164
rosa_multiflora	Rmu_sc0000808.1_g000028 Rmu_sc0010419.1_g000002 Rmu_sc0010419.1_g000004
rosa_roxburghii	Rroxscaffold_2G00121520
rosa_rugosa	Rorug04G0055100 Rorug07G0176500
rosa_samantha	Rh4CG197100 Rh4CG197400 Rh4DG180200 Rh4DG180500 Rh4DG181100 Rh7AG324900 Rh7AG325000 Rh7AG341000 Rh7CG341800 Rh7CG341900 Rh7CG358700
rosa_wichuraiana	Rw4G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	627
AccB1I	GGYRCC	1 cut(s)	627
AccB7I	CCANNNNNTGG	1 cut(s)	158
AccII	CGCG	1 cut(s)	580
AciI	CCGC	1 cut(s)	538
AclWI	GGATC	2 cut(s)	286, 479
AcuI	CTGAAG	2 cut(s)	786, 905
AfaI	GTAC	3 cut(s)	451, 629, 639
AfiI	CCNNNNNNNGG	1 cut(s)	158
AflII	CTTAAG	1 cut(s)	8
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	2 cut(s)	302, 652
AjiI	CACGTC	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	7 cut(s)	92, 190, 573, 772, 792, 854, 863
AluI	AGCT	7 cut(s)	92, 190, 573, 772, 792, 854, 863
Alw21I	GWGCWC	2 cut(s)	575, 616
Alw26I	GTCTC	4 cut(s)	9, 33, 535, 684
AlwI	GGATC	2 cut(s)	286, 479
AlwNI	CAGNNNCTG	2 cut(s)	95, 158
Ama87I	CYCGRG	1 cut(s)	609
ApeKI	GCWGC	5 cut(s)	89, 190, 549, 772, 905
Asp700I	GAANNNNTTC	1 cut(s)	760
Asp718I	GGTACC	1 cut(s)	627
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	110, 886
AvaI	CYCGRG	1 cut(s)	609
AvaII	GGWCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	627
BanII	GRGCYC	2 cut(s)	575, 827
BbsI	GAAGAC	1 cut(s)	478
Bbv12I	GWGCWC	2 cut(s)	575, 616
BbvI	GCAGC	5 cut(s)	101, 177, 536, 759, 892
BccI	CCATC	3 cut(s)	41, 461, 561
BciT130I	CCWGG	1 cut(s)	447
BcoDI	GTCTC	4 cut(s)	9, 33, 535, 684
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	87
BfrI	CTTAAG	1 cut(s)	8
BisI	GCNGC	5 cut(s)	90, 191, 550, 773, 906
BlsI	GCNGC	5 cut(s)	91, 192, 551, 774, 907
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	1 cut(s)	161
BmeT110I	CYCGRG	1 cut(s)	609
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	629
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	3 cut(s)	398, 422, 525
BpiI	GAAGAC	1 cut(s)	478
BpmI	CTGGAG	1 cut(s)	664
Bpu10I	CCTNAGC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	834
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	3 cut(s)	85, 540, 553
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	5 cut(s)	54, 544, 637, 788, 833
BseNI	ACTGG	1 cut(s)	834
BseRI	GAGGAG	1 cut(s)	807
BseXI	GCAGC	5 cut(s)	101, 177, 536, 759, 892
Bsh1236I	CGCG	1 cut(s)	580
BshNI	GGYRCC	1 cut(s)	627
BsiHKAI	GWGCWC	2 cut(s)	575, 616
BsiHKCI	CYCGRG	1 cut(s)	609
BsiSI	CCGG	1 cut(s)	194
BsiWI	CGTACG	1 cut(s)	637
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	4 cut(s)	9, 33, 535, 684
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	588
BsoBI	CYCGRG	1 cut(s)	609
Bsp1286I	GDGCHC	3 cut(s)	575, 616, 827
Bsp143I	GATC	4 cut(s)	115, 141, 278, 484
BspACI	CCGC	1 cut(s)	538
BspCNI	CTCAG	5 cut(s)	53, 543, 636, 789, 832
BspFNI	CGCG	1 cut(s)	580
BspHI	TCATGA	1 cut(s)	738
BspLI	GGNNCC	1 cut(s)	629
BspMAI	CTGCAG	1 cut(s)	91
BspPI	GGATC	2 cut(s)	286, 479
BspQI	GCTCTTC	1 cut(s)	762
BspT107I	GGYRCC	1 cut(s)	627
BspTI	CTTAAG	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	834
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	4 cut(s)	115, 141, 278, 484
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	2 cut(s)	400, 425
Bst6I	CTCTTC	1 cut(s)	762
BstAFI	CTTAAG	1 cut(s)	8
BstC8I	GCNNGC	3 cut(s)	208, 387, 852
BstDEI	CTNAG	8 cut(s)	32, 40, 134, 530, 623, 776, 797, 819
BstEII	GGTNACC	1 cut(s)	98
BstF5I	GGATG	3 cut(s)	85, 540, 553
BstFNI	CGCG	1 cut(s)	580
BstKTI	GATC	4 cut(s)	118, 144, 281, 487
BstMAI	GTCTC	4 cut(s)	9, 33, 535, 684
BstMBI	GATC	4 cut(s)	115, 141, 278, 484
BstMWI	GCNNNNNNNGC	3 cut(s)	386, 611, 860
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	1 cut(s)	667
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	445
BstSFI	CTRYAG	1 cut(s)	87
BstUI	CGCG	1 cut(s)	580
BstV1I	GCAGC	5 cut(s)	101, 177, 536, 759, 892
BstV2I	GAAGAC	1 cut(s)	478
BstX2I	RGATCY	2 cut(s)	278, 484
BstYI	RGATCY	2 cut(s)	278, 484
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	3 cut(s)	85, 540, 553
BtsIMutI	CAGTG	4 cut(s)	62, 430, 693, 827
Cac8I	GCNNGC	3 cut(s)	208, 387, 852
CaiI	CAGNNNCTG	2 cut(s)	95, 158
CciI	TCATGA	1 cut(s)	738
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	3 cut(s)	450, 628, 638
CviAII	CATG	5 cut(s)	104, 173, 382, 664, 739
CviQI	GTAC	3 cut(s)	450, 628, 638
DdeI	CTNAG	8 cut(s)	32, 40, 134, 530, 623, 776, 797, 819
DpnI	GATC	4 cut(s)	117, 143, 280, 486
DpnII	GATC	4 cut(s)	115, 141, 278, 484
Eam1104I	CTCTTC	1 cut(s)	762
EarI	CTCTTC	1 cut(s)	762
Ecl136II	GAGCTC	1 cut(s)	573
Eco24I	GRGCYC	2 cut(s)	575, 827
Eco47I	GGWCC	1 cut(s)	161
Eco53kI	GAGCTC	1 cut(s)	573
Eco57I	CTGAAG	2 cut(s)	786, 905
Eco88I	CYCGRG	1 cut(s)	609
Eco91I	GGTNACC	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	573
EcoO65I	GGTNACC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	445
EcoT38I	GRGCYC	2 cut(s)	575, 827
FaeI	CATG	5 cut(s)	107, 176, 385, 667, 742
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	5 cut(s)	103, 172, 381, 663, 738
Fnu4HI	GCNGC	5 cut(s)	90, 191, 550, 773, 906
FokI	GGATG	3 cut(s)	92, 540, 547
FriOI	GRGCYC	2 cut(s)	575, 827
Fsp4HI	GCNGC	5 cut(s)	90, 191, 550, 773, 906
FspBI	CTAG	1 cut(s)	335
GluI	GCNGC	5 cut(s)	90, 191, 550, 773, 906
GsuI	CTGGAG	1 cut(s)	664
HapII	CCGG	1 cut(s)	194
Hin1II	CATG	5 cut(s)	107, 176, 385, 667, 742
HinfI	GANTC	4 cut(s)	71, 155, 298, 338
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	2 cut(s)	110, 886
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	5 cut(s)	394, 766, 798, 822, 885
Hpy188III	TCNNGA	9 cut(s)	77, 145, 276, 284, 488, 532, 609, 739, 786
Hpy8I	GTNNAC	1 cut(s)	439
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	2 cut(s)	400, 425
HpyCH4IV	ACGT	2 cut(s)	15, 229
HpyCH4V	TGCA	7 cut(s)	19, 89, 112, 310, 350, 567, 586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	386, 611, 860
HpyF3I	CTNAG	8 cut(s)	32, 40, 134, 530, 623, 776, 797, 819
HpySE526I	ACGT	2 cut(s)	15, 229
Hsp92II	CATG	5 cut(s)	107, 176, 385, 667, 742
KpnI	GGTACC	1 cut(s)	631
Kzo9I	GATC	4 cut(s)	115, 141, 278, 484
LguI	GCTCTTC	1 cut(s)	762
LmnI	GCTCC	2 cut(s)	570, 859
Lsp1109I	GCAGC	5 cut(s)	101, 177, 536, 759, 892
LweI	GCATC	3 cut(s)	398, 422, 525
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	2 cut(s)	15, 229
MaeIII	GTNAC	3 cut(s)	82, 98, 892
MalI	GATC	4 cut(s)	117, 143, 280, 486
MboI	GATC	4 cut(s)	115, 141, 278, 484
MboII	GAAGA	7 cut(s)	188, 246, 473, 476, 483, 716, 779
MflI	RGATCY	2 cut(s)	278, 484
MhlI	GDGCHC	3 cut(s)	575, 616, 827
MluCI	AATT	2 cut(s)	239, 588
MmeI	TCCRAC	1 cut(s)	881
MnlI	CCTC	7 cut(s)	70, 100, 427, 495, 606, 825, 828
MroXI	GAANNNNTTC	1 cut(s)	760
MseI	TTAA	4 cut(s)	9, 224, 321, 518
MslI	CAYNNNNRTG	1 cut(s)	668
MspA1I	CMGCKG	1 cut(s)	863
MspCI	CTTAAG	1 cut(s)	8
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	588
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	1 cut(s)	580
MwoI	GCNNNNNNNGC	3 cut(s)	386, 611, 860
NdeII	GATC	4 cut(s)	115, 141, 278, 484
NlaIII	CATG	5 cut(s)	107, 176, 385, 667, 742
NlaIV	GGNNCC	1 cut(s)	629
NmuCI	GTSAC	3 cut(s)	82, 98, 892
NspI	RCATGY	1 cut(s)	667
PaeR7I	CTCGAG	1 cut(s)	609
PagI	TCATGA	1 cut(s)	738
PciI	ACATGT	1 cut(s)	663
PciSI	GCTCTTC	1 cut(s)	762
PctI	GAATGC	1 cut(s)	588
PdmI	GAANNNNTTC	1 cut(s)	760
PfeI	GAWTC	4 cut(s)	71, 155, 298, 338
Pfl23II	CGTACG	1 cut(s)	637
PflMI	CCANNNNNTGG	1 cut(s)	158
PkrI	GCNGC	5 cut(s)	91, 192, 551, 774, 907
PscI	ACATGT	1 cut(s)	663
Psp124BI	GAGCTC	1 cut(s)	575
Psp6I	CCWGG	1 cut(s)	445
PspEI	GGTNACC	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	445
PspLI	CGTACG	1 cut(s)	637
PspN4I	GGNNCC	1 cut(s)	629
PspPI	GGNCC	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	91
PstNI	CAGNNNCTG	2 cut(s)	95, 158
PsuI	RGATCY	2 cut(s)	278, 484
PvuII	CAGCTG	1 cut(s)	863
RsaI	GTAC	3 cut(s)	451, 629, 639
RsaNI	GTAC	3 cut(s)	450, 628, 638
RseI	CAYNNNNRTG	1 cut(s)	668
SacI	GAGCTC	1 cut(s)	575
SapI	GCTCTTC	1 cut(s)	762
SaqAI	TTAA	4 cut(s)	9, 224, 321, 518
SatI	GCNGC	5 cut(s)	90, 191, 550, 773, 906
Sau3AI	GATC	4 cut(s)	115, 141, 278, 484
Sau96I	GGNCC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	447
SduI	GDGCHC	3 cut(s)	575, 616, 827
SfaNI	GCATC	3 cut(s)	398, 422, 525
SfcI	CTRYAG	1 cut(s)	87
Sfr274I	CTCGAG	1 cut(s)	609
SinI	GGWCC	1 cut(s)	161
SlaI	CTCGAG	1 cut(s)	609
SmiMI	CAYNNNNRTG	1 cut(s)	668
SmlI	CTYRAG	2 cut(s)	8, 609
SmoI	CTYRAG	2 cut(s)	8, 609
Sse9I	AATT	2 cut(s)	239, 588
SsiI	CCGC	1 cut(s)	538
SspI	AATATT	1 cut(s)	318
SspMI	CTAG	1 cut(s)	335
SstI	GAGCTC	1 cut(s)	575
StyD4I	CCNGG	1 cut(s)	445
TaaI	ACNGT	2 cut(s)	400, 425
TaiI	ACGT	2 cut(s)	18, 232
TaqI	TCGA	1 cut(s)	610
TasI	AATT	2 cut(s)	239, 588
TfiI	GAWTC	4 cut(s)	71, 155, 298, 338
Tru1I	TTAA	4 cut(s)	9, 224, 321, 518
Tru9I	TTAA	4 cut(s)	9, 224, 321, 518
TscAI	CASTG	4 cut(s)	69, 430, 700, 834
TseFI	GTSAC	3 cut(s)	82, 98, 892
TseI	GCWGC	5 cut(s)	89, 190, 549, 772, 905
Tsp45I	GTSAC	3 cut(s)	82, 98, 892
TspDTI	ATGAA	4 cut(s)	84, 189, 717, 755
TspRI	CASTG	4 cut(s)	69, 430, 700, 834
Van91I	CCANNNNNTGG	1 cut(s)	158
Vha464I	CTTAAG	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	161
XceI	RCATGY	1 cut(s)	667
XhoI	CTCGAG	1 cut(s)	609
XmnI	GAANNNNTTC	1 cut(s)	760
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.