Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010419.1

Orthogroup ID

OG0007500

Physical Location & Seq

Genomic Coordinates Reverse (-)

12211 .. 12429

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010419.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

atgtgttatgttttttttgttttgtttactatattaatcatgaaaggggtggtgggaaagggttctgaagagctgctaagaacatccggaagctatctgagagacgacattgttcctcctcagagcccactggtcgccattgtaaatgggcaagctccaacagctgatgagattgccactgctctgaagcaagtcaccaaatctgctgctggaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046524 GO:0046527

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

72

Amino Acids

7.66

Weight (kDa)

6.06

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007500)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13520 FvH4_4g13520 FvH4_6g47971 FvH4_6g47972 FvH4_6g48814
rosa_laevigata	RLG00000008161 RLG00000008164
rosa_multiflora	Rmu_sc0000808.1_g000028 Rmu_sc0010419.1_g000002 Rmu_sc0010419.1_g000004
rosa_roxburghii	Rroxscaffold_2G00121520
rosa_rugosa	Rorug04G0055100 Rorug07G0176500
rosa_samantha	Rh4CG197100 Rh4CG197400 Rh4DG180200 Rh4DG180500 Rh4DG181100 Rh7AG324900 Rh7AG325000 Rh7AG341000 Rh7CG341800 Rh7CG341900 Rh7CG358700
rosa_wichuraiana	Rw4G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	86
AcuI	CTGAAG	2 cut(s)	87, 206
AluBI	AGCT	4 cut(s)	73, 93, 155, 164
AluI	AGCT	4 cut(s)	73, 93, 155, 164
Alw26I	GTCTC	1 cut(s)	96
Aor13HI	TCCGGA	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	73, 206
AseI	ATTAAT	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	128
BbvI	GCAGC	2 cut(s)	60, 193
BcoDI	GTCTC	1 cut(s)	96
BisI	GCNGC	2 cut(s)	74, 207
BlsI	GCNGC	2 cut(s)	75, 208
BsaWI	WCCGGW	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	135
BseAI	TCCGGA	1 cut(s)	86
BseGI	GGATG	1 cut(s)	83
BseMII	CTCAG	2 cut(s)	89, 134
BseNI	ACTGG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	108
BseXI	GCAGC	2 cut(s)	60, 193
BsiSI	CCGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	96
BsmBI	CGTCTC	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp13I	TCCGGA	1 cut(s)	86
BspCNI	CTCAG	2 cut(s)	90, 133
BspEI	TCCGGA	1 cut(s)	86
BspHI	TCATGA	1 cut(s)	39
BspQI	GCTCTTC	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	3 cut(s)	77, 98, 120
BstF5I	GGATG	1 cut(s)	83
BstMAI	GTCTC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	60, 193
BtsCI	GGATG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	2 cut(s)	128, 177
Cac8I	GCNNGC	1 cut(s)	153
CciI	TCATGA	1 cut(s)	39
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	5 cut(s)	73, 93, 126, 155, 164
CviKI_1	RGCY	5 cut(s)	73, 93, 126, 155, 164
DdeI	CTNAG	3 cut(s)	77, 98, 120
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	128
Eco57I	CTGAAG	2 cut(s)	87, 206
EcoT38I	GRGCYC	1 cut(s)	128
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	1 cut(s)	43
FaiI	YATR	3 cut(s)	9, 32, 41
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	74, 207
FokI	GGATG	1 cut(s)	70
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	2 cut(s)	74, 207
GluI	GCNGC	2 cut(s)	74, 207
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	1 cut(s)	43
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	4 cut(s)	67, 99, 123, 186
Hpy188III	TCNNGA	2 cut(s)	40, 87
Hpy8I	GTNNAC	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	3 cut(s)	77, 98, 120
Hsp92II	CATG	1 cut(s)	43
Kpn2I	TCCGGA	1 cut(s)	86
LguI	GCTCTTC	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	3 cut(s)	100, 116, 195
Lsp1109I	GCAGC	2 cut(s)	60, 193
MaeIII	GTNAC	1 cut(s)	193
MboII	GAAGA	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	2 cut(s)	126, 129
MroI	TCCGGA	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	61
MseI	TTAA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	161
NlaIII	CATG	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	193
PagI	TCATGA	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	75, 208
PshBI	ATTAAT	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	2 cut(s)	74, 207
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	4 cut(s)	75, 95, 157, 166
SgeI	CNNG	5 cut(s)	52, 99, 143, 164, 203
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	2 cut(s)	135, 184
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	2 cut(s)	73, 206
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	56
TspRI	CASTG	2 cut(s)	135, 184
VspI	ATTAAT	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.