Rorug07G0176500

Belongs to the glycosyltransferase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0007500
Physical Location & Seq
Forward (+)
14609720 .. 14610977
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0176500.1

Sequence Viewer

Length: 729 bp
ATGAACTCCAATAACCAGCTCTCAGACTCCAACCAGCAAAGCCTCGAGTCAGTCTCCTCCATCGACAAGCCCGAGACGTCCGTCTTTTCTGACACCTGCAGCGACACGACTCGCCGATTAACTCATTCCGACGGAGATGTGATACTAGCTTCCAGCAGGCCGAAGAAGCGAGCCGGGAGGCGTGTGTTCAAGGAGACTCGCCACCCGGTCTACCGCGGTGTGAGGCGGAGGAACAACAACAAGTGGGTGTGCGAGGTCAGGGAGCCCAACAAGAAGACCAGGATTTGGCTGGGGACGTACCCGACTGCCGAGATGGCGGCTCGGGCACACGACGTGGCTGCATTGGCCCTTAGGGGGAAGCAGGCCTGCCTCAATTTCGCTGATTCCGCGTGGCGCTTGCCTGTTCCGGCTTCCAAAGACCAGCTCGACATCCGCAGGGCCGCCGCCGAGGCTGCCGAGACATTTCGGCCTGAGGAGTTCGGCGGCGTCACAAGCAGCTGCGACGACAACGAGAGGGAACATGAGAATGAGAAAGCCGGGACGGACAACGAGAAGAAGAATGGCTTCTTCGAGGATGATGAGGCCGTCTTCGACATGCCCAGGTTGCTGACTAATATGGCGGAGGGTCTACTGCTCTCTCCCCCTCGTCGTTACTTGGACAGTATGAACCGGGGCGACGATGACGTGGAAAGCGGGTCCAATCTCAACCTGTGGAGCTACTCAATATGA

Protein Analysis

242

Amino Acids

27.29

Weight (kDa)

5.91

Isoelectric Point (pI)

53.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 69 - 119 5.8e-16 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 104
AatII GACGTC 1 cut(s) 80
Acc36I ACCTGC 1 cut(s) 104
AccB7I CCANNNNNTGG 1 cut(s) 285
AccI GTMKAC 2 cut(s) 210, 628
AccII CGCG 2 cut(s) 216, 389
AcyI GRCGYC 2 cut(s) 77, 486
AdeI CACNNNGTG 1 cut(s) 334
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 2 cut(s) 285, 354
AgsI TTSAA 1 cut(s) 190
AjiI CACGTC 2 cut(s) 334, 685
AjnI CCWGG 2 cut(s) 278, 599
AluBI AGCT 5 cut(s) 19, 149, 424, 498, 717
AluI AGCT 5 cut(s) 19, 149, 424, 498, 717
Alw26I GTCTC 4 cut(s) 58, 68, 188, 452
Ama87I CYCGRG 3 cut(s) 44, 71, 321
AoxI GGCC 6 cut(s) 158, 345, 363, 438, 467, 582
ApeKI GCWGC 5 cut(s) 99, 338, 452, 495, 498
Asp700I GAANNNNTTC 1 cut(s) 563
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 3 cut(s) 346, 438, 696
AsuC2I CCSGG 4 cut(s) 175, 206, 538, 671
AvaI CYCGRG 3 cut(s) 44, 71, 321
AvaII GGWCC 1 cut(s) 696
AxyI CCTNAGG 2 cut(s) 350, 471
BaeGI GKGCMC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 267
BbsI GAAGAC 2 cut(s) 281, 580
BbvI GCAGC 5 cut(s) 111, 325, 439, 485, 507
BccI CCATC 2 cut(s) 68, 307
BceAI ACGGC 1 cut(s) 569
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BciT130I CCWGG 2 cut(s) 280, 601
BcnI CCSGG 4 cut(s) 175, 206, 538, 671
BcoDI GTCTC 4 cut(s) 58, 68, 188, 452
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 1 cut(s) 97
BfoI RGCGCY 1 cut(s) 397
BfuAI ACCTGC 1 cut(s) 104
BglI GCCNNNNNGGC 2 cut(s) 314, 449
BisI GCNGC 9 cut(s) 100, 318, 339, 441, 444, 453, 484, 496, 499
BlsI GCNGC 9 cut(s) 101, 319, 340, 442, 445, 454, 485, 497, 500
Bme1390I CCNGG 6 cut(s) 175, 206, 280, 538, 601, 671
Bme18I GGWCC 1 cut(s) 696
BmeT110I CYCGRG 3 cut(s) 44, 71, 321
BmgBI CACGTC 2 cut(s) 334, 685
BmgT120I GGNCC 3 cut(s) 346, 438, 696
BmiI GGNNCC 2 cut(s) 264, 697
BmrFI CCNGG 6 cut(s) 175, 206, 280, 538, 601, 671
BoxI GACNNNNGTC 1 cut(s) 80
BpiI GAAGAC 2 cut(s) 281, 580
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpuMI CCSGG 4 cut(s) 175, 206, 538, 671
BsaHI GRCGYC 2 cut(s) 77, 486
BsaJI CCNNGG 4 cut(s) 214, 447, 599, 670
Bsc4I CCNNNNNNNGG 2 cut(s) 285, 354
Bse21I CCTNAGG 2 cut(s) 350, 471
BseBI CCWGG 2 cut(s) 280, 601
BseDI CCNNGG 4 cut(s) 214, 447, 599, 670
BseGI GGATG 2 cut(s) 429, 580
BseLI CCNNNNNNNGG 2 cut(s) 285, 354
BseMII CTCAG 2 cut(s) 36, 462
BseRI GAGGAG 2 cut(s) 46, 488
BseSI GKGCMC 1 cut(s) 328
BseXI GCAGC 5 cut(s) 111, 325, 439, 485, 507
BseYI CCCAGC 1 cut(s) 289
Bsh1236I CGCG 2 cut(s) 216, 389
BshFI GGCC 6 cut(s) 160, 347, 365, 440, 469, 584
BsiHKCI CYCGRG 3 cut(s) 44, 71, 321
BsiSI CCGG 5 cut(s) 174, 206, 407, 537, 670
BslFI GGGAC 2 cut(s) 307, 553
BslI CCNNNNNNNGG 2 cut(s) 285, 354
BsmAI GTCTC 4 cut(s) 58, 68, 188, 452
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 2 cut(s) 307, 553
BsnI GGCC 6 cut(s) 160, 347, 365, 440, 469, 584
BsoBI CYCGRG 3 cut(s) 44, 71, 321
Bsp1286I GDGCHC 2 cut(s) 267, 328
BspANI GGCC 6 cut(s) 160, 347, 365, 440, 469, 584
BspCNI CTCAG 2 cut(s) 35, 463
BspFNI CGCG 2 cut(s) 216, 389
BspLI GGNNCC 2 cut(s) 264, 697
BspMAI CTGCAG 1 cut(s) 101
BspMI ACCTGC 1 cut(s) 104
BssECI CCNNGG 4 cut(s) 214, 447, 599, 670
BssNI GRCGYC 2 cut(s) 77, 486
Bst2UI CCWGG 2 cut(s) 280, 601
Bst4CI ACNGT 1 cut(s) 662
BstACI GRCGYC 2 cut(s) 77, 486
BstC8I GCNNGC 5 cut(s) 158, 171, 363, 367, 398
BstDEI CTNAG 3 cut(s) 22, 350, 471
BstDSI CCRYGG 1 cut(s) 214
BstF5I GGATG 2 cut(s) 429, 580
BstFNI CGCG 2 cut(s) 216, 389
BstH2I RGCGCY 1 cut(s) 397
BstHHI GCGC 1 cut(s) 396
BstMAI GTCTC 4 cut(s) 58, 68, 188, 452
BstMWI GCNNNNNNNGC 9 cut(s) 166, 314, 323, 344, 386, 449, 452, 492, 604
BstNI CCWGG 2 cut(s) 280, 601
BstNSI RCATGY 1 cut(s) 598
BstPAI GACNNNNGTC 1 cut(s) 80
BstSCI CCNGG 6 cut(s) 173, 204, 278, 536, 599, 669
BstSFI CTRYAG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 328
BstUI CGCG 2 cut(s) 216, 389
BstV1I GCAGC 5 cut(s) 111, 325, 439, 485, 507
BstV2I GAAGAC 2 cut(s) 281, 580
Bsu36I CCTNAGG 2 cut(s) 350, 471
BsuRI GGCC 6 cut(s) 160, 347, 365, 440, 469, 584
BtgI CCRYGG 1 cut(s) 214
BtrI CACGTC 2 cut(s) 334, 685
BtsCI GGATG 2 cut(s) 429, 580
BveI ACCTGC 1 cut(s) 104
Cac8I GCNNGC 5 cut(s) 158, 171, 363, 367, 398
CfoI GCGC 1 cut(s) 396
Cfr13I GGNCC 3 cut(s) 346, 438, 696
Cfr42I CCGCGG 1 cut(s) 217
CseI GACGC 1 cut(s) 475
Csp6I GTAC 1 cut(s) 298
CviAII CATG 2 cut(s) 521, 595
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 3 cut(s) 22, 350, 471
DraIII CACNNNGTG 1 cut(s) 334
EciI GGCGGA 2 cut(s) 241, 635
Eco147I AGGCCT 1 cut(s) 365
Eco24I GRGCYC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 696
Eco81I CCTNAGG 2 cut(s) 350, 471
Eco88I CYCGRG 3 cut(s) 44, 71, 321
EcoRII CCWGG 2 cut(s) 278, 599
EcoT38I GRGCYC 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 2 cut(s) 524, 598
FaiI YATR 5 cut(s) 522, 596, 617, 665, 727
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 2 cut(s) 307, 553
FatI CATG 2 cut(s) 520, 594
FauI CCCGC 1 cut(s) 686
FblI GTMKAC 2 cut(s) 210, 628
Fnu4HI GCNGC 9 cut(s) 100, 318, 339, 441, 444, 453, 484, 496, 499
FokI GGATG 2 cut(s) 416, 587
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 9 cut(s) 100, 318, 339, 441, 444, 453, 484, 496, 499
FspBI CTAG 1 cut(s) 146
GlaI GCGC 1 cut(s) 395
GluI GCNGC 9 cut(s) 100, 318, 339, 441, 444, 453, 484, 496, 499
GsaI CCCAGC 1 cut(s) 293
HaeII RGCGCY 1 cut(s) 397
HaeIII GGCC 6 cut(s) 160, 347, 365, 440, 469, 584
HapII CCGG 5 cut(s) 174, 206, 407, 537, 670
HgaI GACGC 1 cut(s) 475
HhaI GCGC 1 cut(s) 396
Hin1I GRCGYC 2 cut(s) 77, 486
Hin1II CATG 2 cut(s) 524, 598
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HinfI GANTC 5 cut(s) 26, 47, 109, 196, 383
HpaII CCGG 5 cut(s) 174, 206, 407, 537, 670
Hpy166II GTNNAC 2 cut(s) 211, 629
Hpy188I TCNGA 3 cut(s) 25, 91, 130
Hpy8I GTNNAC 2 cut(s) 211, 629
Hpy99I CGWCG 5 cut(s) 134, 335, 506, 651, 680
HpyCH4III ACNGT 1 cut(s) 662
HpyCH4IV ACGT 4 cut(s) 77, 296, 333, 684
HpyCH4V TGCA 2 cut(s) 99, 341
HpyF10VI GCNNNNNNNGC 9 cut(s) 166, 314, 323, 344, 386, 449, 452, 492, 604
HpyF3I CTNAG 3 cut(s) 22, 350, 471
HpySE526I ACGT 4 cut(s) 77, 296, 333, 684
Hsp92I GRCGYC 2 cut(s) 77, 486
Hsp92II CATG 2 cut(s) 524, 598
HspAI GCGC 1 cut(s) 394
KspI CCGCGG 1 cut(s) 217
LmnI GCTCC 2 cut(s) 262, 714
Lsp1109I GCAGC 5 cut(s) 111, 325, 439, 485, 507
MaeI CTAG 1 cut(s) 146
MaeII ACGT 4 cut(s) 77, 296, 333, 684
MaeIII GTNAC 2 cut(s) 487, 650
MboII GAAGA 6 cut(s) 175, 286, 559, 565, 568, 580
MhlI GDGCHC 2 cut(s) 267, 328
MluCI AATT 1 cut(s) 373
MlyI GAGTC 4 cut(s) 20, 56, 103, 190
MmeI TCCRAC 2 cut(s) 54, 153
MroXI GAANNNNTTC 1 cut(s) 563
MseI TTAA 1 cut(s) 119
MslI CAYNNNNRTG 1 cut(s) 525
MspA1I CMGCKG 2 cut(s) 216, 498
MspI CCGG 5 cut(s) 174, 206, 407, 537, 670
MspR9I CCNGG 6 cut(s) 175, 206, 280, 538, 601, 671
MvaI CCWGG 2 cut(s) 280, 601
MvnI CGCG 2 cut(s) 216, 389
MwoI GCNNNNNNNGC 9 cut(s) 166, 314, 323, 344, 386, 449, 452, 492, 604
NciI CCSGG 4 cut(s) 175, 206, 538, 671
NlaIII CATG 2 cut(s) 524, 598
NlaIV GGNNCC 2 cut(s) 264, 697
NmeAIII GCCGAG 3 cut(s) 334, 472, 481
NmuCI GTSAC 1 cut(s) 487
NspI RCATGY 1 cut(s) 598
PaeR7I CTCGAG 1 cut(s) 44
PaqCI CACCTGC 1 cut(s) 104
PceI AGGCCT 1 cut(s) 365
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 563
PfeI GAWTC 1 cut(s) 383
PflMI CCANNNNNTGG 1 cut(s) 285
PkrI GCNGC 9 cut(s) 101, 319, 340, 442, 445, 454, 485, 497, 500
PleI GAGTC 4 cut(s) 20, 55, 103, 190
PpsI GAGTC 4 cut(s) 20, 55, 103, 190
PshAI GACNNNNGTC 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 278, 599
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 2 cut(s) 278, 599
PspN4I GGNNCC 2 cut(s) 264, 697
PspPI GGNCC 3 cut(s) 346, 438, 696
PspXI VCTCGAGB 1 cut(s) 44
PstI CTGCAG 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 498
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 525
SacII CCGCGG 1 cut(s) 217
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 9 cut(s) 100, 318, 339, 441, 444, 453, 484, 496, 499
Sau96I GGNCC 3 cut(s) 346, 438, 696
SchI GAGTC 4 cut(s) 20, 56, 103, 190
ScrFI CCNGG 6 cut(s) 175, 206, 280, 538, 601, 671
SduI GDGCHC 2 cut(s) 267, 328
SfcI CTRYAG 1 cut(s) 97
Sfr274I CTCGAG 1 cut(s) 44
Sfr303I CCGCGG 1 cut(s) 217
SgrBI CCGCGG 1 cut(s) 217
SinI GGWCC 1 cut(s) 696
SlaI CTCGAG 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 373
SseBI AGGCCT 1 cut(s) 365
SspMI CTAG 1 cut(s) 146
StuI AGGCCT 1 cut(s) 365
StyD4I CCNGG 6 cut(s) 173, 204, 278, 536, 599, 669
TaaI ACNGT 1 cut(s) 662
TaiI ACGT 4 cut(s) 80, 299, 336, 687
TaqI TCGA 5 cut(s) 45, 63, 426, 570, 591
TasI AATT 1 cut(s) 373
TauI GCSGC 4 cut(s) 320, 443, 446, 486
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 5 cut(s) 99, 338, 452, 495, 498
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 2 cut(s) 17, 680
TspGWI ACGGA 3 cut(s) 70, 147, 557
Van91I CCANNNNNTGG 1 cut(s) 285
VpaK11BI GGWCC 1 cut(s) 696
XceI RCATGY 1 cut(s) 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
XhoI CTCGAG 1 cut(s) 44
XmiI GTMKAC 2 cut(s) 210, 628
XmnI GAANNNNTTC 1 cut(s) 563
XspI CTAG 1 cut(s) 146
ZraI GACGTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.