Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007500

Physical Location & Seq

Genomic Coordinates Forward (+)

36912149 .. 36912630

Gene Structure 482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG325000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCGAGGACTACGCTGCCATCCAATGTACTGCAGGAGCTCAACGCAAATCCAAATTGTTCCTCACCTTGCTTCTCGAGCACAGGCTCTCAGGTACCTTTTCGTATGTTGGAGATTGAATGTCGCAAACATGTATGTGTTCCTTGGAGAAAGTGGAGACACTGATTATGAAGAAATGATAGCAGGGACTCACAAGACCATAATCATGAAAGGGGTGGTGGGAAAGGGTTCTGAAGAGCTGCTAAGAACATCAGGAAGCTATTTGAGAGACGACATTGTTCCTCAGAGCCCACTGGTCGCCATTGTAAATGGGCAAGCTCCAATAGCTAATGAGATTGCCACTACTCGGAAGCAAGTCACCAAATCTGCTACTGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046524 GO:0046527

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

126

Amino Acids

13.93

Weight (kDa)

9.15

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007500)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13520 FvH4_4g13520 FvH4_6g47971 FvH4_6g47972 FvH4_6g48814
rosa_laevigata	RLG00000008161 RLG00000008164
rosa_multiflora	Rmu_sc0000808.1_g000028 Rmu_sc0010419.1_g000002 Rmu_sc0010419.1_g000004
rosa_roxburghii	Rroxscaffold_2G00121520
rosa_rugosa	Rorug04G0055100 Rorug07G0176500
rosa_samantha	Rh4CG197100 Rh4CG197400 Rh4DG180200 Rh4DG180500 Rh4DG181100 Rh7AG324900 Rh7AG325000 Rh7AG341000 Rh7CG341800 Rh7CG341900 Rh7CG358700
rosa_wichuraiana	Rw4G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	2 cut(s)	29, 95
AfiI	CCNNNNNNNGG	1 cut(s)	345
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	118
AluBI	AGCT	5 cut(s)	39, 238, 258, 317, 326
AluI	AGCT	5 cut(s)	39, 238, 258, 317, 326
Alw21I	GWGCWC	2 cut(s)	41, 82
Alw26I	GTCTC	2 cut(s)	150, 261
Ama87I	CYCGRG	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	15, 238
Asp700I	GAANNNNTTC	1 cut(s)	226
Asp718I	GGTACC	1 cut(s)	93
AsuHPI	GGTGA	2 cut(s)	56, 349
AvaI	CYCGRG	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	93
BanII	GRGCYC	2 cut(s)	41, 290
Bbv12I	GWGCWC	2 cut(s)	41, 82
BbvI	GCAGC	2 cut(s)	2, 225
BccI	CCATC	1 cut(s)	27
BcoDI	GTCTC	2 cut(s)	150, 261
BfmI	CTRYAG	1 cut(s)	31
BisI	GCNGC	2 cut(s)	16, 239
BlsI	GCNGC	2 cut(s)	17, 240
BmeT110I	CYCGRG	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	2 cut(s)	297, 376
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	103, 296
BseNI	ACTGG	2 cut(s)	297, 376
BseXI	GCAGC	2 cut(s)	2, 225
BshNI	GGYRCC	1 cut(s)	93
BsiHKAI	GWGCWC	2 cut(s)	41, 82
BsiHKCI	CYCGRG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	2 cut(s)	150, 261
BsmBI	CGTCTC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	199
BsoBI	CYCGRG	1 cut(s)	75
Bsp1286I	GDGCHC	3 cut(s)	41, 82, 290
BspCNI	CTCAG	2 cut(s)	102, 295
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	95
BspMAI	CTGCAG	1 cut(s)	35
BspQI	GCTCTTC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	297, 376
BssECI	CCNNGG	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	3 cut(s)	89, 242, 282
BstF5I	GGATG	1 cut(s)	19
BstMAI	GTCTC	2 cut(s)	150, 261
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 323
BstNSI	RCATGY	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	2, 225
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	159, 290
Cac8I	GCNNGC	1 cut(s)	315
CciI	TCATGA	1 cut(s)	204
Csp6I	GTAC	2 cut(s)	28, 94
CviAII	CATG	2 cut(s)	130, 205
CviJI	RGCY	7 cut(s)	39, 86, 238, 258, 288, 317, 326
CviKI_1	RGCY	7 cut(s)	39, 86, 238, 258, 288, 317, 326
CviQI	GTAC	2 cut(s)	28, 94
DdeI	CTNAG	3 cut(s)	89, 242, 282
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Ecl136II	GAGCTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	142
Eco24I	GRGCYC	2 cut(s)	41, 290
Eco53kI	GAGCTC	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	142
EcoT38I	GRGCYC	2 cut(s)	41, 290
ErhI	CCWWGG	1 cut(s)	142
Esp3I	CGTCTC	1 cut(s)	261
FaeI	CATG	2 cut(s)	133, 208
FaiI	YATR	6 cut(s)	106, 131, 135, 168, 200, 206
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	2 cut(s)	129, 204
Fnu4HI	GCNGC	2 cut(s)	16, 239
FokI	GGATG	1 cut(s)	6
FriOI	GRGCYC	2 cut(s)	41, 290
Fsp4HI	GCNGC	2 cut(s)	16, 239
GluI	GCNGC	2 cut(s)	16, 239
Hin1II	CATG	2 cut(s)	133, 208
HinfI	GANTC	1 cut(s)	187
HphI	GGTGA	2 cut(s)	56, 349
Hpy188I	TCNGA	3 cut(s)	232, 285, 348
Hpy188III	TCNNGA	3 cut(s)	75, 205, 252
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 323
HpyF3I	CTNAG	3 cut(s)	89, 242, 282
Hsp92II	CATG	2 cut(s)	133, 208
KpnI	GGTACC	1 cut(s)	97
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	36, 322
LpnPI	CCDG	7 cut(s)	19, 68, 76, 168, 237, 278, 357
Lsp1109I	GCAGC	2 cut(s)	2, 225
MaeIII	GTNAC	1 cut(s)	355
MboII	GAAGA	2 cut(s)	182, 245
MhlI	GDGCHC	3 cut(s)	41, 82, 290
MluCI	AATT	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	2 cut(s)	72, 291
MroXI	GAANNNNTTC	1 cut(s)	226
MslI	CAYNNNNRTG	2 cut(s)	134, 203
MwoI	GCNNNNNNNGC	2 cut(s)	77, 323
NlaIII	CATG	2 cut(s)	133, 208
NlaIV	GGNNCC	1 cut(s)	95
NmuCI	GTSAC	1 cut(s)	355
NspI	RCATGY	1 cut(s)	133
PaeR7I	CTCGAG	1 cut(s)	75
PagI	TCATGA	1 cut(s)	204
PciI	ACATGT	1 cut(s)	129
PciSI	GCTCTTC	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	17, 240
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PscI	ACATGT	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	35
RsaI	GTAC	2 cut(s)	29, 95
RsaNI	GTAC	2 cut(s)	28, 94
RseI	CAYNNNNRTG	2 cut(s)	134, 203
SacI	GAGCTC	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	228
SatI	GCNGC	2 cut(s)	16, 239
SchI	GAGTC	1 cut(s)	181
SduI	GDGCHC	3 cut(s)	41, 82, 290
SetI	ASST	8 cut(s)	41, 69, 95, 99, 240, 260, 319, 328
SfcI	CTRYAG	1 cut(s)	31
Sfr274I	CTCGAG	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	75
SmiMI	CAYNNNNRTG	2 cut(s)	134, 203
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	1 cut(s)	54
SstI	GAGCTC	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	142
TaqI	TCGA	1 cut(s)	76
TasI	AATT	1 cut(s)	54
TatI	WGTACW	1 cut(s)	27
TscAI	CASTG	2 cut(s)	166, 297
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	2 cut(s)	15, 238
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	183, 221
TspRI	CASTG	2 cut(s)	166, 297
XceI	RCATGY	1 cut(s)	133
XhoI	CTCGAG	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.