Rh4DG181100

Belongs to the glycosyltransferase 1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
35982906 .. 35983346
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG181100.1

Sequence Viewer

Length: 441 bp
ATGATTCAAATTGTGCAAGAAATATTTAAGGCTGTAAGACTAGATTCTCAAAGTGCAAGATTTACAGGGTTTGCTCTGCTAACAGCTATGCCAGCATCAGAAACAGTAGAGTTTCTGGCATCAGGGAGGGTACAGGCAAATGAGTTTGATGCGTTGGTTTGTAGCAGTGGAAGTGAGGTTTACTACCCTGGTACTTATACAGAAGAAGATGGAAGACTTTTCCCAGATCCAGATTATTCGTCACACATTGACTACCGATGGGGTTGTGAAGGATTAAAGAAAACCATTTGGACGCTCTTAAATGTCCCTGATGGTGAACTGAATTCCACATCTTCGAGCCACATTGAAGAAGATATAAAATCAAGCAGTGCCCATTGCATTTCATACTTGATCAAGGATCCTAGTAAGGTAAATGGTGAAACGTACAAGGATGTAGATTAG

Protein Analysis

146

Amino Acids

16.23

Weight (kDa)

4.58

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 221, 392, 405
AcsI RAATTY 1 cut(s) 322
AfaI GTAC 3 cut(s) 132, 193, 425
AgsI TTSAA 2 cut(s) 8, 347
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
AlwI GGATC 3 cut(s) 221, 392, 405
ApoI RAATTY 1 cut(s) 322
AsuHPI GGTGA 2 cut(s) 326, 428
BaeGI GKGCMC 1 cut(s) 373
BamHI GGATCC 1 cut(s) 397
BbsI GAAGAC 1 cut(s) 220
BccI CCATC 3 cut(s) 203, 252, 305
BciT130I CCWGG 1 cut(s) 189
BclI TGATCA 1 cut(s) 390
BfaI CTAG 2 cut(s) 41, 402
Bme1390I CCNGG 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 3 cut(s) 104, 128, 139
BpiI GAAGAC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 187
Bse3DI GCAATG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 1 cut(s) 436
BseMI GCAATG 1 cut(s) 373
BseSI GKGCMC 1 cut(s) 373
BslFI GGGAC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 3 cut(s) 226, 390, 397
BspLI GGNNCC 1 cut(s) 399
BspPI GGATC 3 cut(s) 221, 392, 405
BsrDI GCAATG 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 3 cut(s) 226, 390, 397
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 93
BstF5I GGATG 1 cut(s) 436
BstKTI GATC 3 cut(s) 229, 393, 400
BstMBI GATC 3 cut(s) 226, 390, 397
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 373
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 2 cut(s) 226, 397
BstYI RGATCY 2 cut(s) 226, 397
BtsCI GGATG 1 cut(s) 436
BtsI GCAGTG 2 cut(s) 172, 373
BtsIMutI CAGTG 2 cut(s) 172, 373
Cac8I GCNNGC 1 cut(s) 93
CseI GACGC 1 cut(s) 301
Csp6I GTAC 3 cut(s) 131, 192, 424
CviJI RGCY 3 cut(s) 32, 86, 339
CviKI_1 RGCY 3 cut(s) 32, 86, 339
CviQI GTAC 3 cut(s) 131, 192, 424
DpnI GATC 3 cut(s) 228, 392, 399
DpnII GATC 3 cut(s) 226, 390, 397
EcoRI GAATTC 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 187
FaiI YATR 4 cut(s) 89, 198, 356, 385
FaqI GGGAC 1 cut(s) 290
FbaI TGATCA 1 cut(s) 390
FspBI CTAG 2 cut(s) 41, 402
HgaI GACGC 1 cut(s) 301
HinfI GANTC 2 cut(s) 4, 44
HphI GGTGA 2 cut(s) 326, 428
Hpy166II GTNNAC 2 cut(s) 181, 317
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 2 cut(s) 181, 317
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 422
HpyCH4V TGCA 3 cut(s) 16, 56, 378
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpySE526I ACGT 1 cut(s) 422
Ksp22I TGATCA 1 cut(s) 390
Kzo9I GATC 3 cut(s) 226, 390, 397
LweI GCATC 3 cut(s) 104, 128, 139
MaeI CTAG 2 cut(s) 41, 402
MaeII ACGT 1 cut(s) 422
MaeIII GTNAC 1 cut(s) 240
MalI GATC 3 cut(s) 228, 392, 399
MboI GATC 3 cut(s) 226, 390, 397
MboII GAAGA 6 cut(s) 215, 218, 225, 324, 359, 362
MflI RGATCY 2 cut(s) 226, 397
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 2 cut(s) 9, 322
MnlI CCTC 2 cut(s) 120, 169
MseI TTAA 3 cut(s) 27, 275, 299
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 3 cut(s) 226, 390, 397
NlaIV GGNNCC 1 cut(s) 399
NmuCI GTSAC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 4, 44
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 399
PsuI RGATCY 2 cut(s) 226, 397
RsaI GTAC 3 cut(s) 132, 193, 425
RsaNI GTAC 3 cut(s) 131, 192, 424
SaqAI TTAA 3 cut(s) 27, 275, 299
Sau3AI GATC 3 cut(s) 226, 390, 397
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 373
SetI ASST 4 cut(s) 88, 180, 411, 425
SfaNI GCATC 3 cut(s) 104, 128, 139
Sse9I AATT 2 cut(s) 9, 322
SspI AATATT 1 cut(s) 24
SspMI CTAG 2 cut(s) 41, 402
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 425
TaqI TCGA 1 cut(s) 335
TasI AATT 2 cut(s) 9, 322
TfiI GAWTC 2 cut(s) 4, 44
Tru1I TTAA 3 cut(s) 27, 275, 299
Tru9I TTAA 3 cut(s) 27, 275, 299
TscAI CASTG 2 cut(s) 172, 373
TseFI GTSAC 1 cut(s) 240
Tsp45I GTSAC 1 cut(s) 240
TspDTI ATGAA 1 cut(s) 372
TspRI CASTG 2 cut(s) 172, 373
XapI RAATTY 1 cut(s) 322
XspI CTAG 2 cut(s) 41, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.