Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009668

Physical Location & Seq

Genomic Coordinates Forward (+)

38682315 .. 38683401

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTTCGACTACCAAAGCTACCTGAAAGTTCACGGTCCTGGTTATGTTGGGAAAACGAGACCCATAACTGAAGGTGTAAAGCTATGCACTCGAAGTGGGCGATCTTGTTCAGAATGCGGCACAAGAACCGGAGTAAGGCTTTCTTGCTTTTGTTGTGCACAAGTGTTGTGTGGAGATTGCCGTGTTAGTAGTGCTTCTGAGTTTGCACTGGTTATAGGAAACAAAAAGGGCATTTGCAAGAGCTGTTGGGATCTTGTTCTGCTTGAAGATCAAGAAAGCTCGTCGGAAAACGATAGCGAAAGCGATGATGATTCAGAAGAGATCACATCGGATGATGCGGAAAGTATAGGCTCGTCAGAAGCGCCTACCAATCTTCCCTGCAATATTTGGAAACAAAATCGCTTTGCATCTTTGGTTGTTGATAACATCAGGCTTGTCTACATGAAAAAGAGCCTTGTGGAGGAGTTGACGAAGGAGCAACCTCATTGTTGGAAAAGCAAAGTGGTTGGAAGTTTTGTGAGAATCAAGACTGACCCAAGAGACTACTCTAGGACAAATTATCACCAACTTGCAGAAGTTCAAGGCATATACAAGAAGAGCTCGACCAGTGAATTTCTCGTGCAAGTGCTTACCAGTAATGTGACAAGAGACATTCCTGTTTCTCAACTTTCAGATTGCAACTTCACCGAGGAAGAATGCGAGGATTTGCGACAAGATGTGGCAAACTGTCGCTTGCTAAGGAAACCCACTGTTTTTGAGTTGGAACACAAGGCAAGAGAACTGTATGAAGATGTAACCAAGCATTGGATTAGGAAAGAGTTGGTGAGGTTGCAGAACTGCGTCGATTGGGCGAATGAGAAGGGAAGGAGAGCAGACTTAGATGAATACATTGAGCAAAGGGAACTGCTGAAGCAAGCATGTGAACAAGAGCGACTCCTAAAACAGGTGCCGCAGGTCATTGTAGAGGTTATGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plus-3 SWIB

Protein Analysis

326

Amino Acids

37.12

Weight (kDa)

5.32

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plus-3	PF03126	142 - 240	2.3e-12	Plus-3 domain
NERD_plant	PF25980	263 - 312	8.3e-20	Plant NERD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009668)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26473 FvH4_6g52630 FvH4_7g09440
malus_domestica	MD15G1414400.v1.1 MD15G1414500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0336751 RchiOBHm_Chr1g0346081
rosa_laevigata	RLG00000028815
rosa_multiflora	Rmu_sc0000907.1_g000013 Rmu_sc0003809.1_g000021 Rmu_ssc0000255.1_g000071
rosa_roxburghii	Rroxscaffold_4G00308830
rosa_rugosa	Rorug01G0177900
rosa_samantha	Rh1AG148800 Rh1AG197400 Rh1BG162700 Rh1CG182400 Rh1DG193300 Rh2CG357500 Rh6BG094500
rosa_wichuraiana	Rw1G016340 Rw1G016570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	943
AccB1I	GGYRCC	1 cut(s)	946
AccB7I	CCANNNNNTGG	1 cut(s)	804
AccI	GTMKAC	1 cut(s)	438
AciI	CCGC	3 cut(s)	117, 338, 950
AclWI	GGATC	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	611
AcuI	CTGAAG	2 cut(s)	90, 929
AfiI	CCNNNNNNNGG	4 cut(s)	135, 460, 804, 943
AgsI	TTSAA	2 cut(s)	266, 581
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	6 cut(s)	18, 82, 243, 279, 600, 975
AluI	AGCT	6 cut(s)	18, 82, 243, 279, 600, 975
Alw21I	GWGCWC	2 cut(s)	160, 602
Alw26I	GTCTC	3 cut(s)	52, 534, 642
Alw44I	GTGCAC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	258
ApaLI	GTGCAC	1 cut(s)	156
ApoI	RAATTY	1 cut(s)	611
AspLEI	GCGC	1 cut(s)	364
AspS9I	GGNCC	1 cut(s)	35
AsuHPI	GGTGA	3 cut(s)	554, 676, 835
AvaII	GGWCC	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	946
BanII	GRGCYC	1 cut(s)	602
BauI	CACGAG	1 cut(s)	617
Bbv12I	GWGCWC	2 cut(s)	160, 602
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	39
BcoDI	GTCTC	3 cut(s)	52, 534, 642
BfaI	CTAG	1 cut(s)	549
BfoI	RGCGCY	1 cut(s)	365
BfuAI	ACCTGC	1 cut(s)	943
BisI	GCNGC	2 cut(s)	118, 950
BlsI	GCNGC	2 cut(s)	119, 951
Bme1390I	CCNGG	1 cut(s)	39
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	948
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	2 cut(s)	325, 416
Bpu10I	CCTNAGC	1 cut(s)	737
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	687
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	4 cut(s)	135, 460, 804, 943
Bse1I	ACTGG	3 cut(s)	213, 606, 633
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	687
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	4 cut(s)	135, 460, 804, 943
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	3 cut(s)	213, 606, 633
BseRI	GAGGAG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	160
BshNI	GGYRCC	1 cut(s)	946
BsiHKAI	GWGCWC	2 cut(s)	160, 602
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	4 cut(s)	135, 460, 804, 943
BsmAI	GTCTC	3 cut(s)	52, 534, 642
BsmI	GAATGC	2 cut(s)	119, 701
Bso31I	GGTCTC	1 cut(s)	52
Bsp1286I	GDGCHC	2 cut(s)	160, 602
Bsp143I	GATC	4 cut(s)	101, 250, 268, 321
BspACI	CCGC	3 cut(s)	117, 338, 950
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	948
BspMI	ACCTGC	1 cut(s)	943
BspPI	GGATC	1 cut(s)	258
BspQI	GCTCTTC	1 cut(s)	590
BspT107I	GGYRCC	1 cut(s)	946
BspTNI	GGTCTC	1 cut(s)	52
BsrI	ACTGG	3 cut(s)	213, 606, 633
BssECI	CCNNGG	1 cut(s)	687
BssMI	GATC	4 cut(s)	101, 250, 268, 321
BssSI	CACGAG	1 cut(s)	617
Bst2BI	CACGAG	1 cut(s)	617
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	4 cut(s)	35, 728, 751, 783
Bst6I	CTCTTC	2 cut(s)	312, 590
BstC8I	GCNNGC	2 cut(s)	734, 915
BstDEI	CTNAG	3 cut(s)	198, 737, 877
BstENI	CCTNNNNNAGG	2 cut(s)	458, 941
BstF5I	GGATG	1 cut(s)	337
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	4 cut(s)	104, 253, 271, 324
BstMAI	GTCTC	3 cut(s)	52, 534, 642
BstMBI	GATC	4 cut(s)	101, 250, 268, 321
BstNI	CCWGG	1 cut(s)	39
BstNSI	RCATGY	1 cut(s)	921
BstSCI	CCNGG	1 cut(s)	37
BstSLI	GKGCMC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	337
BtsIMutI	CAGTG	3 cut(s)	206, 613, 747
BveI	ACCTGC	1 cut(s)	943
Cac8I	GCNNGC	2 cut(s)	734, 915
CfoI	GCGC	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	35
CseI	GACGC	1 cut(s)	829
CspCI	CAANNNNNGTGG	2 cut(s)	736, 771
CviAII	CATG	2 cut(s)	442, 918
DdeI	CTNAG	3 cut(s)	198, 737, 877
DpnI	GATC	4 cut(s)	103, 252, 270, 323
DpnII	GATC	4 cut(s)	101, 250, 268, 321
Eam1104I	CTCTTC	2 cut(s)	312, 590
EarI	CTCTTC	2 cut(s)	312, 590
Ecl136II	GAGCTC	1 cut(s)	600
Eco24I	GRGCYC	1 cut(s)	602
Eco31I	GGTCTC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	35
Eco53kI	GAGCTC	1 cut(s)	600
Eco57I	CTGAAG	2 cut(s)	90, 929
EcoICRI	GAGCTC	1 cut(s)	600
EcoNI	CCTNNNNNAGG	2 cut(s)	458, 941
EcoRII	CCWGG	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	602
FaeI	CATG	2 cut(s)	445, 921
FalI	AAGNNNNNCTT	2 cut(s)	127, 159
FatI	CATG	2 cut(s)	441, 917
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	2 cut(s)	118, 950
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	602
Fsp4HI	GCNGC	2 cut(s)	118, 950
FspBI	CTAG	1 cut(s)	549
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	2 cut(s)	118, 950
HaeII	RGCGCY	1 cut(s)	365
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	1 cut(s)	829
HhaI	GCGC	1 cut(s)	364
Hin1II	CATG	2 cut(s)	445, 921
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HinfI	GANTC	3 cut(s)	311, 522, 933
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	3 cut(s)	554, 676, 835
Hpy166II	GTNNAC	5 cut(s)	31, 158, 439, 468, 923
Hpy188I	TCNGA	7 cut(s)	112, 199, 286, 316, 331, 358, 673
Hpy188III	TCNNGA	2 cut(s)	272, 526
Hpy8I	GTNNAC	5 cut(s)	31, 158, 439, 468, 923
Hpy99I	CGWCG	2 cut(s)	286, 845
HpyAV	CCTTC	4 cut(s)	65, 466, 853, 858
HpyCH4III	ACNGT	4 cut(s)	35, 728, 751, 783
HpyF3I	CTNAG	3 cut(s)	198, 737, 877
Hsp92II	CATG	2 cut(s)	445, 921
HspAI	GCGC	1 cut(s)	362
Kzo9I	GATC	4 cut(s)	101, 250, 268, 321
LguI	GCTCTTC	1 cut(s)	590
LmnI	GCTCC	1 cut(s)	475
LweI	GCATC	2 cut(s)	325, 416
MaeI	CTAG	1 cut(s)	549
MaeIII	GTNAC	2 cut(s)	640, 793
MalI	GATC	4 cut(s)	103, 252, 270, 323
MboI	GATC	4 cut(s)	101, 250, 268, 321
MboII	GAAGA	6 cut(s)	278, 329, 365, 607, 704, 800
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	2 cut(s)	160, 602
MluCI	AATT	2 cut(s)	556, 611
MlyI	GAGTC	1 cut(s)	927
MmeI	TCCRAC	4 cut(s)	264, 470, 487, 741
MnlI	CCTC	6 cut(s)	454, 492, 682, 694, 819, 958
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	39
Mva1269I	GAATGC	2 cut(s)	119, 701
MvaI	CCWGG	1 cut(s)	39
NdeII	GATC	4 cut(s)	101, 250, 268, 321
NlaIII	CATG	2 cut(s)	445, 921
NlaIV	GGNNCC	1 cut(s)	948
NmuCI	GTSAC	1 cut(s)	640
NspI	RCATGY	1 cut(s)	921
PciSI	GCTCTTC	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PctI	GAATGC	2 cut(s)	119, 701
PfeI	GAWTC	2 cut(s)	311, 522
PflMI	CCANNNNNTGG	1 cut(s)	804
PkrI	GCNGC	2 cut(s)	119, 951
PleI	GAGTC	1 cut(s)	927
PpsI	GAGTC	1 cut(s)	927
Psp124BI	GAGCTC	1 cut(s)	602
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	948
PspPI	GGNCC	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	250
SacI	GAGCTC	1 cut(s)	602
SapI	GCTCTTC	1 cut(s)	590
SatI	GCNGC	2 cut(s)	118, 950
Sau3AI	GATC	4 cut(s)	101, 250, 268, 321
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	1 cut(s)	927
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	2 cut(s)	160, 602
SfaNI	GCATC	2 cut(s)	325, 416
SinI	GGWCC	1 cut(s)	35
Sse9I	AATT	2 cut(s)	556, 611
SsiI	CCGC	3 cut(s)	117, 338, 950
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	1 cut(s)	549
SstI	GAGCTC	1 cut(s)	602
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	4 cut(s)	35, 728, 751, 783
TaqI	TCGA	4 cut(s)	6, 91, 602, 843
TasI	AATT	2 cut(s)	556, 611
TauI	GCSGC	2 cut(s)	120, 952
TfiI	GAWTC	2 cut(s)	311, 522
TscAI	CASTG	3 cut(s)	213, 613, 754
TseFI	GTSAC	1 cut(s)	640
Tsp45I	GTSAC	1 cut(s)	640
TspDTI	ATGAA	3 cut(s)	458, 801, 897
TspRI	CASTG	3 cut(s)	213, 613, 754
Van91I	CCANNNNNTGG	1 cut(s)	804
VneI	GTGCAC	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	35
XagI	CCTNNNNNAGG	2 cut(s)	458, 941
XapI	RAATTY	1 cut(s)	611
XceI	RCATGY	1 cut(s)	921
XmiI	GTMKAC	1 cut(s)	438
XspI	CTAG	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.