Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000255.1

Orthogroup ID

OG0009668

Physical Location & Seq

Genomic Coordinates Forward (+)

376734 .. 377657

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000255.1_g000071.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atgagacccttcactgacggtggaatatggactcgaaataggcaatcttgttcggtgtgtggtacaagaaccccagtaaagatttcttgcttttgttgtgcaaaagtgttatgtggaaagtgccgtgttagtagtgcttctgagtttgcggtggttataggaaataaaagaggcatttgcaagagctgtttagatcttgttcagcttgaagatcaagaaagctcatcggaatatgaaagcgaaagggatgatgattcggaagaaatcacttcggaagttgaggacaggatgagctcatccaaagtgcctatcaatcttcctagcaatatccggaataaaagttgttttgcatctttggttgctgataatatcaagcttgtctacttgaagaagaggttggtggaggacttactgaagcagcagcctgattgttgggaaagaaaagtagctggaagttttgtgagagtcaaaactgacccaagagactattttaggagaaattatcaccaacttgcagaagttcaaggcataattaagaagagctcaaacagtgaatatttcttgcaagtgttatccaattatgtgacaagagatattccagtttctcagctttcggattgtgacttcaccgaggaggaatgcaaggatttgcaacaagatgtggcaaactgtcacttgctaagaagacctactgtttttgagtttgaacacaaggcaagagtgctgcatgaagatataaccaagcattggattaagagtgagttggtgaggttgcagaactgtgttgattgggcaaatgagaagggacggagatgcgagttaattgtgtacttggaccaaagagaattgctaaagcaagcatgtgaacaagcgcgactcttaaagcaggtaccggaggtcattgcagatttgcagaggttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plus-3 SWIB

Protein Analysis

307

Amino Acids

35.45

Weight (kDa)

6.93

Isoelectric Point (pI)

61.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009668)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26473 FvH4_6g52630 FvH4_7g09440
malus_domestica	MD15G1414400.v1.1 MD15G1414500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0336751 RchiOBHm_Chr1g0346081
rosa_laevigata	RLG00000028815
rosa_multiflora	Rmu_sc0000907.1_g000013 Rmu_sc0003809.1_g000021 Rmu_ssc0000255.1_g000071
rosa_roxburghii	Rroxscaffold_4G00308830
rosa_rugosa	Rorug01G0177900
rosa_samantha	Rh1AG148800 Rh1AG197400 Rh1BG162700 Rh1CG182400 Rh1DG193300 Rh2CG357500 Rh6BG094500
rosa_wichuraiana	Rw1G016340 Rw1G016570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	922
Acc36I	ACCTGC	1 cut(s)	877
Acc65I	GGTACC	1 cut(s)	889
AccB1I	GGYRCC	1 cut(s)	889
AccB7I	CCANNNNNTGG	1 cut(s)	747
AccI	GTMKAC	1 cut(s)	381
AccII	CGCG	1 cut(s)	874
AccIII	TCCGGA	1 cut(s)	330
AciI	CCGC	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	434
AfaI	GTAC	3 cut(s)	64, 830, 891
AfiI	CCNNNNNNNGG	1 cut(s)	747
AgsI	TTSAA	4 cut(s)	209, 388, 524, 707
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	8 cut(s)	186, 205, 222, 294, 376, 449, 543, 610
AluI	AGCT	8 cut(s)	186, 205, 222, 294, 376, 449, 543, 610
Alw21I	GWGCWC	2 cut(s)	296, 545
Alw26I	GTCTC	1 cut(s)	477
Aor13HI	TCCGGA	1 cut(s)	330
ApeKI	GCWGC	3 cut(s)	418, 421, 724
Asp718I	GGTACC	1 cut(s)	889
AspLEI	GCGC	1 cut(s)	874
AspS9I	GGNCC	1 cut(s)	835
AsuHPI	GGTGA	3 cut(s)	497, 619, 778
AvaII	GGWCC	1 cut(s)	835
BanI	GGYRCC	1 cut(s)	889
BanII	GRGCYC	2 cut(s)	296, 545
BbsI	GAAGAC	1 cut(s)	691
Bbv12I	GWGCWC	2 cut(s)	296, 545
BbvI	GCAGC	3 cut(s)	430, 433, 711
BceAI	ACGGC	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	477
BfaI	CTAG	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	877
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	3 cut(s)	419, 422, 725
BlsI	GCNGC	3 cut(s)	420, 423, 726
Bme18I	GGWCC	1 cut(s)	835
BmgT120I	GGNCC	1 cut(s)	835
BmiI	GGNNCC	1 cut(s)	891
BmrI	ACTGGG	1 cut(s)	68
BmsI	GCATC	2 cut(s)	359, 803
BmuI	ACTGGG	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	691
BsaJI	CCNNGG	1 cut(s)	630
BsaWI	WCCGGW	2 cut(s)	330, 892
Bsc4I	CCNNNNNNNGG	1 cut(s)	747
Bse1I	ACTGG	2 cut(s)	74, 599
Bse3DI	GCAATG	1 cut(s)	900
BseAI	TCCGGA	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	630
BseGI	GGATG	3 cut(s)	253, 294, 296
BseLI	CCNNNNNNNGG	1 cut(s)	747
BseMI	GCAATG	1 cut(s)	900
BseMII	CTCAG	2 cut(s)	132, 620
BseNI	ACTGG	2 cut(s)	74, 599
BseRI	GAGGAG	1 cut(s)	647
BseXI	GCAGC	3 cut(s)	430, 433, 711
Bsh1236I	CGCG	1 cut(s)	874
BshNI	GGYRCC	1 cut(s)	889
BsiHKAI	GWGCWC	2 cut(s)	296, 545
BsiSI	CCGG	2 cut(s)	331, 893
BslFI	GGGAC	1 cut(s)	819
BslI	CCNNNNNNNGG	1 cut(s)	747
BsmAI	GTCTC	1 cut(s)	477
BsmFI	GGGAC	1 cut(s)	819
BsmI	GAATGC	1 cut(s)	644
Bsp1286I	GDGCHC	2 cut(s)	296, 545
Bsp13I	TCCGGA	1 cut(s)	330
Bsp143I	GATC	2 cut(s)	193, 211
BspACI	CCGC	1 cut(s)	149
BspCNI	CTCAG	2 cut(s)	133, 619
BspEI	TCCGGA	1 cut(s)	330
BspFNI	CGCG	1 cut(s)	874
BspLI	GGNNCC	1 cut(s)	891
BspMI	ACCTGC	1 cut(s)	877
BspQI	GCTCTTC	1 cut(s)	533
BspT107I	GGYRCC	1 cut(s)	889
BsrDI	GCAATG	1 cut(s)	900
BsrI	ACTGG	2 cut(s)	74, 599
BssECI	CCNNGG	1 cut(s)	630
BssMI	GATC	2 cut(s)	193, 211
Bst4CI	ACNGT	5 cut(s)	20, 551, 671, 694, 782
Bst6I	CTCTTC	2 cut(s)	386, 533
BstC8I	GCNNGC	1 cut(s)	858
BstDEI	CTNAG	3 cut(s)	141, 606, 680
BstF5I	GGATG	3 cut(s)	253, 294, 296
BstFNI	CGCG	1 cut(s)	874
BstHHI	GCGC	1 cut(s)	874
BstKTI	GATC	2 cut(s)	196, 214
BstMAI	GTCTC	1 cut(s)	477
BstMBI	GATC	2 cut(s)	193, 211
BstNSI	RCATGY	1 cut(s)	864
BstUI	CGCG	1 cut(s)	874
BstV1I	GCAGC	3 cut(s)	430, 433, 711
BstV2I	GAAGAC	1 cut(s)	691
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	253, 294, 296
BtsIMutI	CAGTG	2 cut(s)	12, 556
BveI	ACCTGC	1 cut(s)	877
Cac8I	GCNNGC	1 cut(s)	858
CfoI	GCGC	1 cut(s)	874
Cfr13I	GGNCC	1 cut(s)	835
Csp6I	GTAC	3 cut(s)	63, 829, 890
CviAII	CATG	2 cut(s)	728, 861
CviJI	RGCY	9 cut(s)	186, 205, 222, 294, 376, 424, 449, 543, 610
CviKI_1	RGCY	9 cut(s)	186, 205, 222, 294, 376, 424, 449, 543, 610
CviQI	GTAC	3 cut(s)	63, 829, 890
DdeI	CTNAG	3 cut(s)	141, 606, 680
DpnI	GATC	2 cut(s)	195, 213
DpnII	GATC	2 cut(s)	193, 211
Eam1104I	CTCTTC	2 cut(s)	386, 533
EarI	CTCTTC	2 cut(s)	386, 533
Ecl136II	GAGCTC	2 cut(s)	294, 543
Eco24I	GRGCYC	2 cut(s)	296, 545
Eco47I	GGWCC	1 cut(s)	835
Eco53kI	GAGCTC	2 cut(s)	294, 543
Eco57I	CTGAAG	1 cut(s)	434
EcoICRI	GAGCTC	2 cut(s)	294, 543
EcoT38I	GRGCYC	2 cut(s)	296, 545
FaeI	CATG	2 cut(s)	731, 864
FaqI	GGGAC	1 cut(s)	819
FatI	CATG	2 cut(s)	727, 860
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	3 cut(s)	419, 422, 725
FokI	GGATG	3 cut(s)	260, 283, 301
FriOI	GRGCYC	2 cut(s)	296, 545
Fsp4HI	GCNGC	3 cut(s)	419, 422, 725
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	1 cut(s)	873
GluI	GCNGC	3 cut(s)	419, 422, 725
HapII	CCGG	2 cut(s)	331, 893
HhaI	GCGC	1 cut(s)	874
Hin1II	CATG	2 cut(s)	731, 864
Hin6I	GCGC	1 cut(s)	872
HinP1I	GCGC	1 cut(s)	872
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	4 cut(s)	31, 254, 465, 876
HpaII	CCGG	2 cut(s)	331, 893
HphI	GGTGA	3 cut(s)	497, 619, 778
Hpy166II	GTNNAC	3 cut(s)	382, 829, 866
Hpy188I	TCNGA	5 cut(s)	142, 229, 259, 274, 616
Hpy188III	TCNNGA	2 cut(s)	215, 331
Hpy8I	GTNNAC	3 cut(s)	382, 829, 866
HpyAV	CCTTC	2 cut(s)	19, 796
HpyCH4III	ACNGT	5 cut(s)	20, 551, 671, 694, 782
HpyF3I	CTNAG	3 cut(s)	141, 606, 680
Hsp92II	CATG	2 cut(s)	731, 864
HspAI	GCGC	1 cut(s)	872
Kpn2I	TCCGGA	1 cut(s)	330
KpnI	GGTACC	1 cut(s)	893
Kzo9I	GATC	2 cut(s)	193, 211
LguI	GCTCTTC	1 cut(s)	533
LpnPI	CCDG	8 cut(s)	87, 271, 344, 435, 438, 612, 872, 906
Lsp1109I	GCAGC	3 cut(s)	430, 433, 711
LweI	GCATC	2 cut(s)	359, 803
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	3 cut(s)	583, 620, 671
MalI	GATC	2 cut(s)	195, 213
MboI	GATC	2 cut(s)	193, 211
MboII	GAAGA	8 cut(s)	221, 272, 308, 400, 403, 550, 696, 743
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	2 cut(s)	296, 545
MluCI	AATT	5 cut(s)	499, 531, 577, 822, 845
MlyI	GAGTC	3 cut(s)	25, 474, 870
MnlI	CCTC	9 cut(s)	164, 274, 387, 397, 625, 628, 762, 889, 909
MroI	TCCGGA	1 cut(s)	330
MseI	TTAA	4 cut(s)	534, 753, 821, 881
MspI	CCGG	2 cut(s)	331, 893
Mva1269I	GAATGC	1 cut(s)	644
MvnI	CGCG	1 cut(s)	874
NdeII	GATC	2 cut(s)	193, 211
NlaIII	CATG	2 cut(s)	731, 864
NlaIV	GGNNCC	1 cut(s)	891
NmuCI	GTSAC	3 cut(s)	583, 620, 671
NspI	RCATGY	1 cut(s)	864
PciSI	GCTCTTC	1 cut(s)	533
PctI	GAATGC	1 cut(s)	644
PfeI	GAWTC	1 cut(s)	254
PflMI	CCANNNNNTGG	1 cut(s)	747
PkrI	GCNGC	3 cut(s)	420, 423, 726
PleI	GAGTC	3 cut(s)	25, 473, 870
PpsI	GAGTC	3 cut(s)	25, 473, 870
PsiI	TTATAA	1 cut(s)	922
Psp124BI	GAGCTC	2 cut(s)	296, 545
PspN4I	GGNNCC	1 cut(s)	891
PspPI	GGNCC	1 cut(s)	835
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	3 cut(s)	64, 830, 891
RsaNI	GTAC	3 cut(s)	63, 829, 890
SacI	GAGCTC	2 cut(s)	296, 545
SapI	GCTCTTC	1 cut(s)	533
SaqAI	TTAA	4 cut(s)	534, 753, 821, 881
SatI	GCNGC	3 cut(s)	419, 422, 725
Sau3AI	GATC	2 cut(s)	193, 211
Sau96I	GGNCC	1 cut(s)	835
SchI	GAGTC	3 cut(s)	25, 474, 870
SduI	GDGCHC	2 cut(s)	296, 545
SfaNI	GCATC	2 cut(s)	359, 803
SinI	GGWCC	1 cut(s)	835
Sse9I	AATT	5 cut(s)	499, 531, 577, 822, 845
SsiI	CCGC	1 cut(s)	149
SspI	AATATT	1 cut(s)	557
SspMI	CTAG	1 cut(s)	321
SstI	GAGCTC	2 cut(s)	296, 545
TaaI	ACNGT	5 cut(s)	20, 551, 671, 694, 782
TaqI	TCGA	1 cut(s)	34
TasI	AATT	5 cut(s)	499, 531, 577, 822, 845
TatI	WGTACW	1 cut(s)	828
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	4 cut(s)	534, 753, 821, 881
Tru9I	TTAA	4 cut(s)	534, 753, 821, 881
TscAI	CASTG	2 cut(s)	19, 556
TseFI	GTSAC	3 cut(s)	583, 620, 671
TseI	GCWGC	3 cut(s)	418, 421, 724
Tsp45I	GTSAC	3 cut(s)	583, 620, 671
TspDTI	ATGAA	2 cut(s)	249, 744
TspGWI	ACGGA	1 cut(s)	823
TspRI	CASTG	2 cut(s)	19, 556
Van91I	CCANNNNNTGG	1 cut(s)	747
VpaK11BI	GGWCC	1 cut(s)	835
XceI	RCATGY	1 cut(s)	864
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.