Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009668

Physical Location & Seq

Genomic Coordinates Reverse (-)

40038553 .. 40040019

Gene Structure 1467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG182400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTTCGATTACCAGAGTTACCTAAAAGTTCATCATCCTGGTAATTGTGTAGGGAAAATGAGACCCTTCACTGACGGTGGAAAGCTATGGACTCGAAGTAGGCAATCTTGTTCGGTGTGTGGTACAAGAACCCCAGTAAAGATTTCTTGCTTTTGTTGTGCAAAAGTGTTATGTGGAAAGTGCCGTGTTAGTAGTGCTTCTGAGTTTGCGGTGGTTATAGGAAATAAAAGAGGCATTTGCAAGAGCTGTTTAGATCTTGTTCTGCTTGAAGATCAAGAAAGCTCATCGGAATATGAAAGCGAAAGGGATGATGATTCGGAAGAAATCACTTCGGAAGTTGAGGACAGGATGAGCTCATCCAAAGTGCCTATCAATCTTCCTAGCAATATCCGGAATAAAAGTTGTTTTGCATCTTTGGTTGCTGATAATATCAAGCTTGTCTACTTGAAGAAGAGCTTGGTGGAGGAGTTAATGAAGCAGCAGCCTGATTGTTGGGAAAGAAAAGTAGTTGGAAGTTTTGTGAGAGTCAAAACTGACCCAAGAGACTATTTTAGGACAAATTATCACCAACTTGCAGAAGTTCAAGGCATAATTAAGAAGAGCTCAAACAGTGAATATTTCTTGCAAGTGTTATCCAATTATGTGACGAGAGATATTCCAGTTTCTCAGCTTTCGGATTGTGACTTCACCGAGGAGGAATGCGAGGATTTGCAAAAAGATGTGGCAAACTGTCACTTGCTAAGAAGACCTACTGTTTTTGAGTTTGAACACAAGGCAAGAGTGCTGCATGAAGATATAACCAAGCATTGGATTAAGAGTGAGTTGGTGAGGTTGCAGAACTGTGTTGATTGGGCAAATGAGAAGGGACGGAGATGCGAGTTATTTGTGTACTTGGACCAAAGAGAATTGCTAAAGCAAGCATGTGAACAAGAGCGACTCTTAAAGCAGGTACCGGAGGTCATTGCAGATTTGCAGAGGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plus-3 SWIB

Protein Analysis

327

Amino Acids

37.77

Weight (kDa)

6.42

Isoelectric Point (pI)

58.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plus-3	PF03126	143 - 240	9.9e-13	Plus-3 domain
NERD_plant	PF25980	264 - 313	1.6e-21	Plant NERD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009668)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26473 FvH4_6g52630 FvH4_7g09440
malus_domestica	MD15G1414400.v1.1 MD15G1414500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0336751 RchiOBHm_Chr1g0346081
rosa_laevigata	RLG00000028815
rosa_multiflora	Rmu_sc0000907.1_g000013 Rmu_sc0003809.1_g000021 Rmu_ssc0000255.1_g000071
rosa_roxburghii	Rroxscaffold_4G00308830
rosa_rugosa	Rorug01G0177900
rosa_samantha	Rh1AG148800 Rh1AG197400 Rh1BG162700 Rh1CG182400 Rh1DG193300 Rh2CG357500 Rh6BG094500
rosa_wichuraiana	Rw1G016340 Rw1G016570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	982
Acc36I	ACCTGC	1 cut(s)	937
Acc65I	GGTACC	1 cut(s)	949
AccB1I	GGYRCC	1 cut(s)	949
AccB7I	CCANNNNNTGG	1 cut(s)	807
AccI	GTMKAC	1 cut(s)	441
AccIII	TCCGGA	1 cut(s)	390
AciI	CCGC	1 cut(s)	209
AfaI	GTAC	3 cut(s)	124, 890, 951
AfiI	CCNNNNNNNGG	1 cut(s)	807
AgsI	TTSAA	4 cut(s)	269, 448, 584, 767
AjnI	CCWGG	1 cut(s)	37
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AluBI	AGCT	8 cut(s)	85, 246, 282, 354, 436, 456, 603, 670
AluI	AGCT	8 cut(s)	85, 246, 282, 354, 436, 456, 603, 670
Alw21I	GWGCWC	2 cut(s)	356, 605
Alw26I	GTCTC	2 cut(s)	55, 537
Aor13HI	TCCGGA	1 cut(s)	390
ApeKI	GCWGC	3 cut(s)	478, 481, 784
Asp718I	GGTACC	1 cut(s)	949
AspS9I	GGNCC	1 cut(s)	895
AsuHPI	GGTGA	3 cut(s)	557, 679, 838
AvaII	GGWCC	1 cut(s)	895
BanI	GGYRCC	1 cut(s)	949
BanII	GRGCYC	2 cut(s)	356, 605
BbsI	GAAGAC	1 cut(s)	751
Bbv12I	GWGCWC	2 cut(s)	356, 605
BbvI	GCAGC	3 cut(s)	490, 493, 771
BceAI	ACGGC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	39
BcoDI	GTCTC	2 cut(s)	55, 537
BfaI	CTAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	937
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	3 cut(s)	479, 482, 785
BlsI	GCNGC	3 cut(s)	480, 483, 786
Bme1390I	CCNGG	1 cut(s)	39
Bme18I	GGWCC	1 cut(s)	895
BmgT120I	GGNCC	1 cut(s)	895
BmiI	GGNNCC	1 cut(s)	951
BmrFI	CCNGG	1 cut(s)	39
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	2 cut(s)	419, 863
BmuI	ACTGGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	751
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	690
BsaWI	WCCGGW	2 cut(s)	390, 952
Bsc4I	CCNNNNNNNGG	1 cut(s)	807
Bse1I	ACTGG	2 cut(s)	134, 659
Bse3DI	GCAATG	1 cut(s)	960
BseAI	TCCGGA	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	690
BseGI	GGATG	4 cut(s)	34, 313, 354, 356
BseLI	CCNNNNNNNGG	1 cut(s)	807
BseMI	GCAATG	1 cut(s)	960
BseMII	CTCAG	2 cut(s)	192, 680
BseNI	ACTGG	2 cut(s)	134, 659
BseRI	GAGGAG	2 cut(s)	479, 707
BseXI	GCAGC	3 cut(s)	490, 493, 771
BshNI	GGYRCC	1 cut(s)	949
BsiHKAI	GWGCWC	2 cut(s)	356, 605
BsiSI	CCGG	2 cut(s)	391, 953
BslFI	GGGAC	1 cut(s)	879
BslI	CCNNNNNNNGG	1 cut(s)	807
BsmAI	GTCTC	2 cut(s)	55, 537
BsmFI	GGGAC	1 cut(s)	879
BsmI	GAATGC	1 cut(s)	704
Bso31I	GGTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	356, 605
Bsp13I	TCCGGA	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	253, 271
BspACI	CCGC	1 cut(s)	209
BspCNI	CTCAG	2 cut(s)	193, 679
BspEI	TCCGGA	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	951
BspMI	ACCTGC	1 cut(s)	937
BspQI	GCTCTTC	2 cut(s)	446, 593
BspT107I	GGYRCC	1 cut(s)	949
BspTNI	GGTCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	960
BsrI	ACTGG	2 cut(s)	134, 659
BssECI	CCNNGG	1 cut(s)	690
BssMI	GATC	2 cut(s)	253, 271
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	5 cut(s)	77, 611, 731, 754, 842
Bst6I	CTCTTC	2 cut(s)	446, 593
BstC8I	GCNNGC	1 cut(s)	918
BstDEI	CTNAG	3 cut(s)	201, 666, 740
BstF5I	GGATG	4 cut(s)	34, 313, 354, 356
BstKTI	GATC	2 cut(s)	256, 274
BstMAI	GTCTC	2 cut(s)	55, 537
BstMBI	GATC	2 cut(s)	253, 271
BstNI	CCWGG	1 cut(s)	39
BstNSI	RCATGY	1 cut(s)	924
BstSCI	CCNGG	1 cut(s)	37
BstV1I	GCAGC	3 cut(s)	490, 493, 771
BstV2I	GAAGAC	1 cut(s)	751
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BtsCI	GGATG	4 cut(s)	34, 313, 354, 356
BtsIMutI	CAGTG	2 cut(s)	69, 616
BveI	ACCTGC	1 cut(s)	937
Cac8I	GCNNGC	1 cut(s)	918
Cfr13I	GGNCC	1 cut(s)	895
Csp6I	GTAC	3 cut(s)	123, 889, 950
CviAII	CATG	2 cut(s)	788, 921
CviJI	RGCY	9 cut(s)	85, 246, 282, 354, 436, 456, 484, 603, 670
CviKI_1	RGCY	9 cut(s)	85, 246, 282, 354, 436, 456, 484, 603, 670
CviQI	GTAC	3 cut(s)	123, 889, 950
DdeI	CTNAG	3 cut(s)	201, 666, 740
DpnI	GATC	2 cut(s)	255, 273
DpnII	GATC	2 cut(s)	253, 271
Eam1104I	CTCTTC	2 cut(s)	446, 593
EarI	CTCTTC	2 cut(s)	446, 593
Ecl136II	GAGCTC	2 cut(s)	354, 603
Eco24I	GRGCYC	2 cut(s)	356, 605
Eco31I	GGTCTC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	895
Eco53kI	GAGCTC	2 cut(s)	354, 603
EcoICRI	GAGCTC	2 cut(s)	354, 603
EcoRII	CCWGG	1 cut(s)	37
EcoT38I	GRGCYC	2 cut(s)	356, 605
FaeI	CATG	2 cut(s)	791, 924
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FaqI	GGGAC	1 cut(s)	879
FatI	CATG	2 cut(s)	787, 920
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	3 cut(s)	479, 482, 785
FokI	GGATG	4 cut(s)	21, 320, 343, 361
FriOI	GRGCYC	2 cut(s)	356, 605
Fsp4HI	GCNGC	3 cut(s)	479, 482, 785
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	3 cut(s)	479, 482, 785
HapII	CCGG	2 cut(s)	391, 953
Hin1II	CATG	2 cut(s)	791, 924
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	4 cut(s)	91, 314, 525, 936
HpaII	CCGG	2 cut(s)	391, 953
HphI	GGTGA	3 cut(s)	557, 679, 838
Hpy166II	GTNNAC	3 cut(s)	442, 889, 926
Hpy188I	TCNGA	5 cut(s)	202, 289, 319, 334, 676
Hpy188III	TCNNGA	2 cut(s)	275, 391
Hpy8I	GTNNAC	3 cut(s)	442, 889, 926
HpyAV	CCTTC	2 cut(s)	76, 856
HpyCH4III	ACNGT	5 cut(s)	77, 611, 731, 754, 842
HpyF3I	CTNAG	3 cut(s)	201, 666, 740
Hsp92II	CATG	2 cut(s)	791, 924
Kpn2I	TCCGGA	1 cut(s)	390
KpnI	GGTACC	1 cut(s)	953
Kzo9I	GATC	2 cut(s)	253, 271
LguI	GCTCTTC	2 cut(s)	446, 593
Lsp1109I	GCAGC	3 cut(s)	490, 493, 771
LweI	GCATC	2 cut(s)	419, 863
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	4 cut(s)	17, 643, 680, 731
MalI	GATC	2 cut(s)	255, 273
MboI	GATC	2 cut(s)	253, 271
MboII	GAAGA	8 cut(s)	281, 332, 368, 460, 463, 610, 756, 803
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	2 cut(s)	356, 605
MluCI	AATT	5 cut(s)	43, 559, 591, 637, 905
MlyI	GAGTC	3 cut(s)	85, 534, 930
MmeI	TCCRAC	1 cut(s)	490
MnlI	CCTC	9 cut(s)	224, 334, 457, 685, 688, 697, 822, 949, 969
MroI	TCCGGA	1 cut(s)	390
MseI	TTAA	4 cut(s)	470, 594, 813, 941
MspI	CCGG	2 cut(s)	391, 953
MspR9I	CCNGG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	704
MvaI	CCWGG	1 cut(s)	39
NdeII	GATC	2 cut(s)	253, 271
NlaIII	CATG	2 cut(s)	791, 924
NlaIV	GGNNCC	1 cut(s)	951
NmuCI	GTSAC	3 cut(s)	643, 680, 731
NspI	RCATGY	1 cut(s)	924
PciSI	GCTCTTC	2 cut(s)	446, 593
PctI	GAATGC	1 cut(s)	704
PfeI	GAWTC	1 cut(s)	314
PflMI	CCANNNNNTGG	1 cut(s)	807
PkrI	GCNGC	3 cut(s)	480, 483, 786
PleI	GAGTC	3 cut(s)	85, 533, 930
PpsI	GAGTC	3 cut(s)	85, 533, 930
PsiI	TTATAA	1 cut(s)	982
Psp124BI	GAGCTC	2 cut(s)	356, 605
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	951
PspPI	GGNCC	1 cut(s)	895
PsuI	RGATCY	1 cut(s)	253
RsaI	GTAC	3 cut(s)	124, 890, 951
RsaNI	GTAC	3 cut(s)	123, 889, 950
SacI	GAGCTC	2 cut(s)	356, 605
SapI	GCTCTTC	2 cut(s)	446, 593
SaqAI	TTAA	4 cut(s)	470, 594, 813, 941
SatI	GCNGC	3 cut(s)	479, 482, 785
Sau3AI	GATC	2 cut(s)	253, 271
Sau96I	GGNCC	1 cut(s)	895
SchI	GAGTC	3 cut(s)	85, 534, 930
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	2 cut(s)	356, 605
SfaNI	GCATC	2 cut(s)	419, 863
SinI	GGWCC	1 cut(s)	895
Sse9I	AATT	5 cut(s)	43, 559, 591, 637, 905
SsiI	CCGC	1 cut(s)	209
SspI	AATATT	1 cut(s)	617
SspMI	CTAG	1 cut(s)	381
SstI	GAGCTC	2 cut(s)	356, 605
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	5 cut(s)	77, 611, 731, 754, 842
TaqI	TCGA	2 cut(s)	6, 94
TasI	AATT	5 cut(s)	43, 559, 591, 637, 905
TatI	WGTACW	1 cut(s)	888
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	4 cut(s)	470, 594, 813, 941
Tru9I	TTAA	4 cut(s)	470, 594, 813, 941
TscAI	CASTG	2 cut(s)	76, 616
TseFI	GTSAC	3 cut(s)	643, 680, 731
TseI	GCWGC	3 cut(s)	478, 481, 784
Tsp45I	GTSAC	3 cut(s)	643, 680, 731
TspDTI	ATGAA	4 cut(s)	20, 309, 488, 804
TspGWI	ACGGA	1 cut(s)	883
TspRI	CASTG	2 cut(s)	76, 616
Van91I	CCANNNNNTGG	1 cut(s)	807
VpaK11BI	GGWCC	1 cut(s)	895
XceI	RCATGY	1 cut(s)	924
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.