regulation of transcription by RNA polymerase I
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g26473 FvH4_6g52630 FvH4_7g09440 |
| malus_domestica | MD15G1414400.v1.1 MD15G1414500.v1.1 |
| rosa_chinensis | RchiOBHm_Chr1g0336751 RchiOBHm_Chr1g0346081 |
| rosa_laevigata | RLG00000028815 |
| rosa_multiflora | Rmu_sc0000907.1_g000013 Rmu_sc0003809.1_g000021 Rmu_ssc0000255.1_g000071 |
| rosa_roxburghii | Rroxscaffold_4G00308830 |
| rosa_rugosa | Rorug01G0177900 |
| rosa_samantha | Rh1AG148800 Rh1AG197400 Rh1BG162700 Rh1CG182400 Rh1DG193300 Rh2CG357500 Rh6BG094500 |
| rosa_wichuraiana | Rw1G016340 Rw1G016570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 807 |
| AccI | GTMKAC | 1 cut(s) | 441 |
| AclWI | GGATC | 1 cut(s) | 530 |
| AcsI | RAATTY | 2 cut(s) | 352, 559 |
| AcuI | CTGAAG | 1 cut(s) | 336 |
| AfaI | GTAC | 1 cut(s) | 890 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 807 |
| AgsI | TTSAA | 5 cut(s) | 266, 357, 448, 584, 767 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 440, 472 |
| Alw21I | GWGCWC | 1 cut(s) | 605 |
| Alw26I | GTCTC | 3 cut(s) | 52, 537, 859 |
| AlwI | GGATC | 1 cut(s) | 530 |
| ApeKI | GCWGC | 4 cut(s) | 180, 478, 481, 784 |
| ApoI | RAATTY | 2 cut(s) | 352, 559 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 352 |
| AspS9I | GGNCC | 1 cut(s) | 895 |
| AsuHPI | GGTGA | 3 cut(s) | 23, 679, 838 |
| AvaII | GGWCC | 1 cut(s) | 895 |
| BanII | GRGCYC | 1 cut(s) | 605 |
| BbsI | GAAGAC | 1 cut(s) | 751 |
| Bbv12I | GWGCWC | 1 cut(s) | 605 |
| BbvI | GCAGC | 4 cut(s) | 167, 465, 493, 771 |
| BccI | CCATC | 1 cut(s) | 42 |
| BcoDI | GTCTC | 3 cut(s) | 52, 537, 859 |
| BfaI | CTAG | 2 cut(s) | 381, 552 |
| BfmI | CTRYAG | 1 cut(s) | 479 |
| BglII | AGATCT | 1 cut(s) | 250 |
| BisI | GCNGC | 4 cut(s) | 181, 479, 482, 785 |
| BlsI | GCNGC | 4 cut(s) | 182, 480, 483, 786 |
| Bme18I | GGWCC | 1 cut(s) | 895 |
| BmgT120I | GGNCC | 1 cut(s) | 895 |
| BmrI | ACTGGG | 1 cut(s) | 125 |
| BmsI | GCATC | 1 cut(s) | 419 |
| BmuI | ACTGGG | 1 cut(s) | 125 |
| BpiI | GAAGAC | 1 cut(s) | 751 |
| BsaI | GGTCTC | 1 cut(s) | 52 |
| BsaJI | CCNNGG | 1 cut(s) | 690 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 807 |
| Bse1I | ACTGG | 2 cut(s) | 131, 206 |
| BseDI | CCNNGG | 1 cut(s) | 690 |
| BseGI | GGATG | 1 cut(s) | 34 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 807 |
| BseMII | CTCAG | 1 cut(s) | 189 |
| BseNI | ACTGG | 2 cut(s) | 131, 206 |
| BseRI | GAGGAG | 2 cut(s) | 479, 707 |
| BseXI | GCAGC | 4 cut(s) | 167, 465, 493, 771 |
| BsgI | GTGCAG | 2 cut(s) | 136, 810 |
| BsiHKAI | GWGCWC | 1 cut(s) | 605 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 807 |
| BsmAI | GTCTC | 3 cut(s) | 52, 537, 859 |
| BsmBI | CGTCTC | 1 cut(s) | 859 |
| BsmI | GAATGC | 1 cut(s) | 704 |
| Bso31I | GGTCTC | 1 cut(s) | 52 |
| Bsp1286I | GDGCHC | 1 cut(s) | 605 |
| Bsp143I | GATC | 3 cut(s) | 250, 268, 535 |
| BspCNI | CTCAG | 1 cut(s) | 190 |
| BspMAI | CTGCAG | 1 cut(s) | 483 |
| BspPI | GGATC | 1 cut(s) | 530 |
| BspQI | GCTCTTC | 1 cut(s) | 593 |
| BspTNI | GGTCTC | 1 cut(s) | 52 |
| BsrI | ACTGG | 2 cut(s) | 131, 206 |
| BssECI | CCNNGG | 1 cut(s) | 690 |
| BssMI | GATC | 3 cut(s) | 250, 268, 535 |
| Bst4CI | ACNGT | 5 cut(s) | 74, 611, 731, 754, 842 |
| Bst6I | CTCTTC | 2 cut(s) | 593, 857 |
| BstC8I | GCNNGC | 1 cut(s) | 789 |
| BstDEI | CTNAG | 2 cut(s) | 198, 740 |
| BstF5I | GGATG | 1 cut(s) | 34 |
| BstKTI | GATC | 3 cut(s) | 253, 271, 538 |
| BstMAI | GTCTC | 3 cut(s) | 52, 537, 859 |
| BstMBI | GATC | 3 cut(s) | 250, 268, 535 |
| BstNSI | RCATGY | 1 cut(s) | 920 |
| BstSFI | CTRYAG | 1 cut(s) | 479 |
| BstV1I | GCAGC | 4 cut(s) | 167, 465, 493, 771 |
| BstV2I | GAAGAC | 1 cut(s) | 751 |
| BstX2I | RGATCY | 1 cut(s) | 250 |
| BstYI | RGATCY | 1 cut(s) | 250 |
| BtsCI | GGATG | 1 cut(s) | 34 |
| BtsIMutI | CAGTG | 4 cut(s) | 66, 117, 213, 616 |
| Cac8I | GCNNGC | 1 cut(s) | 789 |
| Cfr13I | GGNCC | 1 cut(s) | 895 |
| Csp6I | GTAC | 1 cut(s) | 889 |
| CviAII | CATG | 1 cut(s) | 917 |
| CviQI | GTAC | 1 cut(s) | 889 |
| DdeI | CTNAG | 2 cut(s) | 198, 740 |
| DpnI | GATC | 3 cut(s) | 252, 270, 537 |
| DpnII | GATC | 3 cut(s) | 250, 268, 535 |
| Eam1104I | CTCTTC | 2 cut(s) | 593, 857 |
| EarI | CTCTTC | 2 cut(s) | 593, 857 |
| Ecl136II | GAGCTC | 1 cut(s) | 603 |
| Eco24I | GRGCYC | 1 cut(s) | 605 |
| Eco31I | GGTCTC | 1 cut(s) | 52 |
| Eco47I | GGWCC | 1 cut(s) | 895 |
| Eco53kI | GAGCTC | 1 cut(s) | 603 |
| Eco57I | CTGAAG | 1 cut(s) | 336 |
| EcoICRI | GAGCTC | 1 cut(s) | 603 |
| EcoRI | GAATTC | 1 cut(s) | 352 |
| EcoT38I | GRGCYC | 1 cut(s) | 605 |
| Esp3I | CGTCTC | 1 cut(s) | 859 |
| FaeI | CATG | 1 cut(s) | 920 |
| FaiI | YATR | 7 cut(s) | 85, 215, 291, 590, 642, 797, 918 |
| FatI | CATG | 1 cut(s) | 916 |
| FblI | GTMKAC | 1 cut(s) | 441 |
| Fnu4HI | GCNGC | 4 cut(s) | 181, 479, 482, 785 |
| FokI | GGATG | 1 cut(s) | 21 |
| FriOI | GRGCYC | 1 cut(s) | 605 |
| Fsp4HI | GCNGC | 4 cut(s) | 181, 479, 482, 785 |
| FspBI | CTAG | 2 cut(s) | 381, 552 |
| GluI | GCNGC | 4 cut(s) | 181, 479, 482, 785 |
| Hin1II | CATG | 1 cut(s) | 920 |
| HindIII | AAGCTT | 2 cut(s) | 137, 434 |
| HinfI | GANTC | 4 cut(s) | 311, 525, 878, 932 |
| HphI | GGTGA | 3 cut(s) | 23, 679, 838 |
| Hpy166II | GTNNAC | 3 cut(s) | 31, 442, 922 |
| Hpy188I | TCNGA | 7 cut(s) | 199, 286, 316, 331, 393, 540, 676 |
| Hpy188III | TCNNGA | 2 cut(s) | 38, 272 |
| Hpy8I | GTNNAC | 3 cut(s) | 31, 442, 922 |
| HpyAV | CCTTC | 1 cut(s) | 73 |
| HpyCH4III | ACNGT | 5 cut(s) | 74, 611, 731, 754, 842 |
| HpyF3I | CTNAG | 2 cut(s) | 198, 740 |
| Hsp92II | CATG | 1 cut(s) | 920 |
| Kzo9I | GATC | 3 cut(s) | 250, 268, 535 |
| LguI | GCTCTTC | 1 cut(s) | 593 |
| LpnPI | CCDG | 6 cut(s) | 26, 144, 219, 498, 661, 672 |
| Lsp1109I | GCAGC | 4 cut(s) | 167, 465, 493, 771 |
| LweI | GCATC | 1 cut(s) | 419 |
| MaeI | CTAG | 2 cut(s) | 381, 552 |
| MaeIII | GTNAC | 3 cut(s) | 643, 680, 731 |
| MalI | GATC | 3 cut(s) | 252, 270, 537 |
| MboI | GATC | 3 cut(s) | 250, 268, 535 |
| MboII | GAAGA | 8 cut(s) | 135, 278, 329, 344, 368, 610, 756, 874 |
| MflI | RGATCY | 1 cut(s) | 250 |
| MhlI | GDGCHC | 1 cut(s) | 605 |
| MluCI | AATT | 3 cut(s) | 352, 559, 637 |
| MlyI | GAGTC | 3 cut(s) | 534, 887, 926 |
| MnlI | CCTC | 7 cut(s) | 221, 331, 457, 685, 688, 697, 822 |
| MroXI | GAANNNNTTC | 1 cut(s) | 352 |
| MseI | TTAA | 2 cut(s) | 470, 937 |
| Mva1269I | GAATGC | 1 cut(s) | 704 |
| NdeII | GATC | 3 cut(s) | 250, 268, 535 |
| NlaIII | CATG | 1 cut(s) | 920 |
| NmuCI | GTSAC | 3 cut(s) | 643, 680, 731 |
| NspI | RCATGY | 1 cut(s) | 920 |
| PciSI | GCTCTTC | 1 cut(s) | 593 |
| PctI | GAATGC | 1 cut(s) | 704 |
| PdmI | GAANNNNTTC | 1 cut(s) | 352 |
| PfeI | GAWTC | 1 cut(s) | 311 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 807 |
| PkrI | GCNGC | 4 cut(s) | 182, 480, 483, 786 |
| PleI | GAGTC | 3 cut(s) | 533, 886, 926 |
| PpsI | GAGTC | 3 cut(s) | 533, 886, 926 |
| Psp124BI | GAGCTC | 1 cut(s) | 605 |
| PspPI | GGNCC | 1 cut(s) | 895 |
| PstI | CTGCAG | 1 cut(s) | 483 |
| PsuI | RGATCY | 1 cut(s) | 250 |
| RsaI | GTAC | 1 cut(s) | 890 |
| RsaNI | GTAC | 1 cut(s) | 889 |
| SacI | GAGCTC | 1 cut(s) | 605 |
| SapI | GCTCTTC | 1 cut(s) | 593 |
| SaqAI | TTAA | 2 cut(s) | 470, 937 |
| SatI | GCNGC | 4 cut(s) | 181, 479, 482, 785 |
| Sau3AI | GATC | 3 cut(s) | 250, 268, 535 |
| Sau96I | GGNCC | 1 cut(s) | 895 |
| SchI | GAGTC | 3 cut(s) | 534, 887, 926 |
| SduI | GDGCHC | 1 cut(s) | 605 |
| SfaNI | GCATC | 1 cut(s) | 419 |
| SfcI | CTRYAG | 1 cut(s) | 479 |
| SinI | GGWCC | 1 cut(s) | 895 |
| Sse9I | AATT | 3 cut(s) | 352, 559, 637 |
| SspI | AATATT | 1 cut(s) | 388 |
| SspMI | CTAG | 2 cut(s) | 381, 552 |
| SstI | GAGCTC | 1 cut(s) | 605 |
| TaaI | ACNGT | 5 cut(s) | 74, 611, 731, 754, 842 |
| TaqI | TCGA | 1 cut(s) | 6 |
| TasI | AATT | 3 cut(s) | 352, 559, 637 |
| TatI | WGTACW | 1 cut(s) | 888 |
| TfiI | GAWTC | 1 cut(s) | 311 |
| Tru1I | TTAA | 2 cut(s) | 470, 937 |
| Tru9I | TTAA | 2 cut(s) | 470, 937 |
| TscAI | CASTG | 4 cut(s) | 73, 117, 213, 616 |
| TseFI | GTSAC | 3 cut(s) | 643, 680, 731 |
| TseI | GCWGC | 4 cut(s) | 180, 478, 481, 784 |
| Tsp45I | GTSAC | 3 cut(s) | 643, 680, 731 |
| TspDTI | ATGAA | 3 cut(s) | 306, 365, 488 |
| TspGWI | ACGGA | 1 cut(s) | 883 |
| TspRI | CASTG | 4 cut(s) | 73, 117, 213, 616 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 807 |
| VpaK11BI | GGWCC | 1 cut(s) | 895 |
| XapI | RAATTY | 2 cut(s) | 352, 559 |
| XceI | RCATGY | 1 cut(s) | 920 |
| XmiI | GTMKAC | 1 cut(s) | 441 |
| XmnI | GAANNNNTTC | 1 cut(s) | 352 |
| XspI | CTAG | 2 cut(s) | 381, 552 |