Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003809.1

Orthogroup ID

OG0009668

Physical Location & Seq

Genomic Coordinates Reverse (-)

80010 .. 80936

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003809.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atgagacccttaactgacggtggaaagctatggactcgaaataggcaatcttgttcggtgtgtggtacaagaaccccagtaaagatttcttgctttttttgtgcaaaagtgttatgtggaaagtgccgtgttagtagtgcttctgagtttgcggtggttataggaaataaaagaggcatttgcaagagctgtttagatcttgttcagcttgaagatcaagaaagctcatcagaatatgaaagcgaaagggatgatgattcggaagaaatcacttcggaagttgaggacaggatgagctcatccaaagtgcctatcaatcttcctagcaatatccggaataaaagttgttttgcatctttggttgctgataatatcaagcttgtctacttgaagaagaggttggtggaggacttaatgaagcagcagcctgattgttgggaaagaaaagtagttggaagttttgtgagagtcaaaactgacccaagagactattttaggagaaattatcaccaacttgcagaagttcaaggcataattaagaagagctcaaacagtgaatatttcttgcaagtgttatccaattatgtgacaagagatattccagtttctcagctttcggattgtgacttcaccgaggaggaatgcaaggatttgcaacaagatgtggcaaactgtcacttgctaagaagacctactgtttttgagtttgaacacaaggcaagagtgctgcatgaagatataaccaagcattggattaagagtgagttggtgaggttgcagaactgtgttgattgggcaaatgagaagggacggagatgcgagttaattgtgtacttggaccaaagagaattgctaaagcaagcatgtgaacaagagcgactcttaaagcaggtaccggaggtcattgcagatttgcagaggttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plus-3 SWIB

Protein Analysis

308

Amino Acids

35.7

Weight (kDa)

6.93

Isoelectric Point (pI)

62.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009668)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26473 FvH4_6g52630 FvH4_7g09440
malus_domestica	MD15G1414400.v1.1 MD15G1414500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0336751 RchiOBHm_Chr1g0346081
rosa_laevigata	RLG00000028815
rosa_multiflora	Rmu_sc0000907.1_g000013 Rmu_sc0003809.1_g000021 Rmu_ssc0000255.1_g000071
rosa_roxburghii	Rroxscaffold_4G00308830
rosa_rugosa	Rorug01G0177900
rosa_samantha	Rh1AG148800 Rh1AG197400 Rh1BG162700 Rh1CG182400 Rh1DG193300 Rh2CG357500 Rh6BG094500
rosa_wichuraiana	Rw1G016340 Rw1G016570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	925
Acc36I	ACCTGC	1 cut(s)	880
Acc65I	GGTACC	1 cut(s)	892
AccB1I	GGYRCC	1 cut(s)	892
AccB7I	CCANNNNNTGG	1 cut(s)	750
AccI	GTMKAC	1 cut(s)	384
AccIII	TCCGGA	1 cut(s)	333
AciI	CCGC	1 cut(s)	152
AfaI	GTAC	3 cut(s)	67, 833, 894
AfiI	CCNNNNNNNGG	1 cut(s)	750
AgsI	TTSAA	4 cut(s)	212, 391, 527, 710
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AluBI	AGCT	8 cut(s)	28, 189, 208, 225, 297, 379, 546, 613
AluI	AGCT	8 cut(s)	28, 189, 208, 225, 297, 379, 546, 613
Alw21I	GWGCWC	2 cut(s)	299, 548
Alw26I	GTCTC	1 cut(s)	480
Aor13HI	TCCGGA	1 cut(s)	333
ApeKI	GCWGC	3 cut(s)	421, 424, 727
Asp718I	GGTACC	1 cut(s)	892
AspS9I	GGNCC	1 cut(s)	838
AsuHPI	GGTGA	3 cut(s)	500, 622, 781
AvaII	GGWCC	1 cut(s)	838
BanI	GGYRCC	1 cut(s)	892
BanII	GRGCYC	2 cut(s)	299, 548
BbsI	GAAGAC	1 cut(s)	694
Bbv12I	GWGCWC	2 cut(s)	299, 548
BbvI	GCAGC	3 cut(s)	433, 436, 714
BceAI	ACGGC	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	480
BfaI	CTAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	880
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	3 cut(s)	422, 425, 728
BlsI	GCNGC	3 cut(s)	423, 426, 729
Bme18I	GGWCC	1 cut(s)	838
BmgT120I	GGNCC	1 cut(s)	838
BmiI	GGNNCC	1 cut(s)	894
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	2 cut(s)	362, 806
BmuI	ACTGGG	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	694
BsaJI	CCNNGG	1 cut(s)	633
BsaWI	WCCGGW	2 cut(s)	333, 895
Bsc4I	CCNNNNNNNGG	1 cut(s)	750
Bse1I	ACTGG	2 cut(s)	77, 602
Bse3DI	GCAATG	1 cut(s)	903
BseAI	TCCGGA	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	633
BseGI	GGATG	3 cut(s)	256, 297, 299
BseLI	CCNNNNNNNGG	1 cut(s)	750
BseMI	GCAATG	1 cut(s)	903
BseMII	CTCAG	2 cut(s)	135, 623
BseNI	ACTGG	2 cut(s)	77, 602
BseRI	GAGGAG	1 cut(s)	650
BseXI	GCAGC	3 cut(s)	433, 436, 714
BshNI	GGYRCC	1 cut(s)	892
BsiHKAI	GWGCWC	2 cut(s)	299, 548
BsiSI	CCGG	2 cut(s)	334, 896
BslFI	GGGAC	1 cut(s)	822
BslI	CCNNNNNNNGG	1 cut(s)	750
BsmAI	GTCTC	1 cut(s)	480
BsmFI	GGGAC	1 cut(s)	822
BsmI	GAATGC	1 cut(s)	647
Bsp1286I	GDGCHC	2 cut(s)	299, 548
Bsp13I	TCCGGA	1 cut(s)	333
Bsp143I	GATC	2 cut(s)	196, 214
BspACI	CCGC	1 cut(s)	152
BspCNI	CTCAG	2 cut(s)	136, 622
BspEI	TCCGGA	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	894
BspMI	ACCTGC	1 cut(s)	880
BspQI	GCTCTTC	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	892
BsrDI	GCAATG	1 cut(s)	903
BsrI	ACTGG	2 cut(s)	77, 602
BssECI	CCNNGG	1 cut(s)	633
BssMI	GATC	2 cut(s)	196, 214
Bst4CI	ACNGT	5 cut(s)	20, 554, 674, 697, 785
Bst6I	CTCTTC	2 cut(s)	389, 536
BstC8I	GCNNGC	1 cut(s)	861
BstDEI	CTNAG	3 cut(s)	144, 609, 683
BstF5I	GGATG	3 cut(s)	256, 297, 299
BstKTI	GATC	2 cut(s)	199, 217
BstMAI	GTCTC	1 cut(s)	480
BstMBI	GATC	2 cut(s)	196, 214
BstNSI	RCATGY	1 cut(s)	867
BstV1I	GCAGC	3 cut(s)	433, 436, 714
BstV2I	GAAGAC	1 cut(s)	694
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BtsCI	GGATG	3 cut(s)	256, 297, 299
BtsIMutI	CAGTG	1 cut(s)	559
BveI	ACCTGC	1 cut(s)	880
Cac8I	GCNNGC	1 cut(s)	861
Cfr13I	GGNCC	1 cut(s)	838
Csp6I	GTAC	3 cut(s)	66, 832, 893
CviAII	CATG	2 cut(s)	731, 864
CviJI	RGCY	9 cut(s)	28, 189, 208, 225, 297, 379, 427, 546, 613
CviKI_1	RGCY	9 cut(s)	28, 189, 208, 225, 297, 379, 427, 546, 613
CviQI	GTAC	3 cut(s)	66, 832, 893
DdeI	CTNAG	3 cut(s)	144, 609, 683
DpnI	GATC	2 cut(s)	198, 216
DpnII	GATC	2 cut(s)	196, 214
Eam1104I	CTCTTC	2 cut(s)	389, 536
EarI	CTCTTC	2 cut(s)	389, 536
Ecl136II	GAGCTC	2 cut(s)	297, 546
Eco24I	GRGCYC	2 cut(s)	299, 548
Eco47I	GGWCC	1 cut(s)	838
Eco53kI	GAGCTC	2 cut(s)	297, 546
EcoICRI	GAGCTC	2 cut(s)	297, 546
EcoT38I	GRGCYC	2 cut(s)	299, 548
FaeI	CATG	2 cut(s)	734, 867
FaqI	GGGAC	1 cut(s)	822
FatI	CATG	2 cut(s)	730, 863
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	3 cut(s)	422, 425, 728
FokI	GGATG	3 cut(s)	263, 286, 304
FriOI	GRGCYC	2 cut(s)	299, 548
Fsp4HI	GCNGC	3 cut(s)	422, 425, 728
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	3 cut(s)	422, 425, 728
HapII	CCGG	2 cut(s)	334, 896
Hin1II	CATG	2 cut(s)	734, 867
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	4 cut(s)	34, 257, 468, 879
HpaII	CCGG	2 cut(s)	334, 896
HphI	GGTGA	3 cut(s)	500, 622, 781
Hpy166II	GTNNAC	3 cut(s)	385, 832, 869
Hpy188I	TCNGA	5 cut(s)	145, 232, 262, 277, 619
Hpy188III	TCNNGA	2 cut(s)	218, 334
Hpy8I	GTNNAC	3 cut(s)	385, 832, 869
HpyAV	CCTTC	1 cut(s)	799
HpyCH4III	ACNGT	5 cut(s)	20, 554, 674, 697, 785
HpyF3I	CTNAG	3 cut(s)	144, 609, 683
Hsp92II	CATG	2 cut(s)	734, 867
Kpn2I	TCCGGA	1 cut(s)	333
KpnI	GGTACC	1 cut(s)	896
Kzo9I	GATC	2 cut(s)	196, 214
LguI	GCTCTTC	1 cut(s)	536
LpnPI	CCDG	7 cut(s)	90, 274, 347, 441, 615, 875, 909
Lsp1109I	GCAGC	3 cut(s)	433, 436, 714
LweI	GCATC	2 cut(s)	362, 806
MaeI	CTAG	1 cut(s)	324
MaeIII	GTNAC	3 cut(s)	586, 623, 674
MalI	GATC	2 cut(s)	198, 216
MboI	GATC	2 cut(s)	196, 214
MboII	GAAGA	8 cut(s)	224, 275, 311, 403, 406, 553, 699, 746
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	2 cut(s)	299, 548
MluCI	AATT	5 cut(s)	502, 534, 580, 825, 848
MlyI	GAGTC	3 cut(s)	28, 477, 873
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	9 cut(s)	167, 277, 390, 400, 628, 631, 765, 892, 912
MroI	TCCGGA	1 cut(s)	333
MseI	TTAA	6 cut(s)	11, 413, 537, 756, 824, 884
MspI	CCGG	2 cut(s)	334, 896
Mva1269I	GAATGC	1 cut(s)	647
NdeII	GATC	2 cut(s)	196, 214
NlaIII	CATG	2 cut(s)	734, 867
NlaIV	GGNNCC	1 cut(s)	894
NmuCI	GTSAC	3 cut(s)	586, 623, 674
NspI	RCATGY	1 cut(s)	867
PciSI	GCTCTTC	1 cut(s)	536
PctI	GAATGC	1 cut(s)	647
PfeI	GAWTC	1 cut(s)	257
PflMI	CCANNNNNTGG	1 cut(s)	750
PkrI	GCNGC	3 cut(s)	423, 426, 729
PleI	GAGTC	3 cut(s)	28, 476, 873
PpsI	GAGTC	3 cut(s)	28, 476, 873
PsiI	TTATAA	1 cut(s)	925
Psp124BI	GAGCTC	2 cut(s)	299, 548
PspN4I	GGNNCC	1 cut(s)	894
PspPI	GGNCC	1 cut(s)	838
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	3 cut(s)	67, 833, 894
RsaNI	GTAC	3 cut(s)	66, 832, 893
SacI	GAGCTC	2 cut(s)	299, 548
SapI	GCTCTTC	1 cut(s)	536
SaqAI	TTAA	6 cut(s)	11, 413, 537, 756, 824, 884
SatI	GCNGC	3 cut(s)	422, 425, 728
Sau3AI	GATC	2 cut(s)	196, 214
Sau96I	GGNCC	1 cut(s)	838
SchI	GAGTC	3 cut(s)	28, 477, 873
SduI	GDGCHC	2 cut(s)	299, 548
SfaNI	GCATC	2 cut(s)	362, 806
SinI	GGWCC	1 cut(s)	838
Sse9I	AATT	5 cut(s)	502, 534, 580, 825, 848
SsiI	CCGC	1 cut(s)	152
SspI	AATATT	1 cut(s)	560
SspMI	CTAG	1 cut(s)	324
SstI	GAGCTC	2 cut(s)	299, 548
TaaI	ACNGT	5 cut(s)	20, 554, 674, 697, 785
TaqI	TCGA	1 cut(s)	37
TasI	AATT	5 cut(s)	502, 534, 580, 825, 848
TatI	WGTACW	1 cut(s)	831
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	6 cut(s)	11, 413, 537, 756, 824, 884
Tru9I	TTAA	6 cut(s)	11, 413, 537, 756, 824, 884
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	3 cut(s)	586, 623, 674
TseI	GCWGC	3 cut(s)	421, 424, 727
Tsp45I	GTSAC	3 cut(s)	586, 623, 674
TspDTI	ATGAA	3 cut(s)	252, 431, 747
TspGWI	ACGGA	1 cut(s)	826
TspRI	CASTG	1 cut(s)	559
Van91I	CCANNNNNTGG	1 cut(s)	750
VpaK11BI	GGWCC	1 cut(s)	838
XceI	RCATGY	1 cut(s)	867
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.