Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009668

Physical Location & Seq

Genomic Coordinates Reverse (-)

38346142 .. 38347604

Gene Structure 1463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG193300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTTCGATTACCAGAGTTTCCTAAAAGTGCATCATCCTGGTTGTGTAGGGAAAATGAGACCCTTCACTGACGGTGGAAAGCTATGGACTCGAAGTAGGCAATCTTGTTCGGTGTGTGGTACAAGAACCCCAGTAAAGATTTCTTGCTTTTGTTGTGCAAAAGTGTTATGTGGAAAGTGCCGTGTTAGTAGTGCTTCTGAGTTTGCGGTGGTTAGAGGAAATAAAAGAGGCATTTGCAAGAGCTGTTTAGATCTTGTTCTGCTTGAAGATCAAGAAAGCTCATCGGAATATGAAAGCGAAAGGGATGATGATTCAGAAGAAATCACTTCGGAAGTTGAGGACAGGATGAGCTCATCCAAAGTGCCTATCAATCTTCCTAGCAATATCCGGAATAAGAGTTGTTTTGCATCTTTGGTTGCTGATAATATCAAGCTTGTCTACTTGAAGAAGAGCTTGGTGGAGGACTTAATGAAGCAGCAGCCTGATTGTTGGGAAAGAAAAGTAGTTGGAAGTTTTGTGAGAGTCAAAACTGACCCAAGAGACTATTTTAGGCCAAATTATCACCAACTTGCAGAAGTTCAAGGCATAATTAAGAAGAGCTCAAACAGTGAATATTTCTTGCAAGTGTTATCCAATTATGTGACAAGAGATATTCCAGTTTCTCAGCTTTCGGATTGTGACTTCACCGAGGAGGAATGCAAGGATTTGCAACAAGATGTGGCAAACTGTCACTTGCTAAGAAGACCTACTGTTTTTGAGTTTGAACACAAGGCAAGAGTGCTGCATGAAGATATAACCAAGCATTGGATTAGGAGTGAGTTGGTGAGGTTGCAGAACTGTGTTGATTGGGCAAATGAGAAGGGACGGAGATGCGAGTTATTTGTGTACTTGGACCAAAGAGAATTGCTAAAGCAAGCATGTGAACAAGAGCGACTCTTAAAGCAGGTACCGGAGGTCATTGCAGATTTGCAGAGGTTAAAAGCTAGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plus-3 SWIB

Protein Analysis

330

Amino Acids

38.14

Weight (kDa)

7.79

Isoelectric Point (pI)

62.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plus-3	PF03126	142 - 240	2.1e-12	Plus-3 domain
NERD_plant	PF25980	263 - 312	3.8e-21	Plant NERD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009668)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26473 FvH4_6g52630 FvH4_7g09440
malus_domestica	MD15G1414400.v1.1 MD15G1414500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0336751 RchiOBHm_Chr1g0346081
rosa_laevigata	RLG00000028815
rosa_multiflora	Rmu_sc0000907.1_g000013 Rmu_sc0003809.1_g000021 Rmu_ssc0000255.1_g000071
rosa_roxburghii	Rroxscaffold_4G00308830
rosa_rugosa	Rorug01G0177900
rosa_samantha	Rh1AG148800 Rh1AG197400 Rh1BG162700 Rh1CG182400 Rh1DG193300 Rh2CG357500 Rh6BG094500
rosa_wichuraiana	Rw1G016340 Rw1G016570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	934
Acc65I	GGTACC	1 cut(s)	946
AccB1I	GGYRCC	1 cut(s)	946
AccB7I	CCANNNNNTGG	1 cut(s)	804
AccI	GTMKAC	1 cut(s)	438
AccIII	TCCGGA	1 cut(s)	387
AciI	CCGC	1 cut(s)	206
AfaI	GTAC	3 cut(s)	121, 887, 948
AfiI	CCNNNNNNNGG	1 cut(s)	804
AgsI	TTSAA	4 cut(s)	266, 445, 581, 764
AjnI	CCWGG	1 cut(s)	37
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	9 cut(s)	82, 243, 279, 351, 433, 453, 600, 667, 983
AluI	AGCT	9 cut(s)	82, 243, 279, 351, 433, 453, 600, 667, 983
Alw21I	GWGCWC	2 cut(s)	353, 602
Alw26I	GTCTC	2 cut(s)	52, 534
Aor13HI	TCCGGA	1 cut(s)	387
AoxI	GGCC	1 cut(s)	551
ApeKI	GCWGC	3 cut(s)	475, 478, 781
Asp718I	GGTACC	1 cut(s)	946
AspS9I	GGNCC	1 cut(s)	892
AsuHPI	GGTGA	3 cut(s)	554, 676, 835
AvaII	GGWCC	1 cut(s)	892
BanI	GGYRCC	1 cut(s)	946
BanII	GRGCYC	2 cut(s)	353, 602
BbsI	GAAGAC	1 cut(s)	748
Bbv12I	GWGCWC	2 cut(s)	353, 602
BbvI	GCAGC	3 cut(s)	487, 490, 768
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	39
BcoDI	GTCTC	2 cut(s)	52, 534
BfaI	CTAG	2 cut(s)	378, 984
BfuAI	ACCTGC	1 cut(s)	934
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	3 cut(s)	476, 479, 782
BlsI	GCNGC	3 cut(s)	477, 480, 783
Bme1390I	CCNGG	1 cut(s)	39
Bme18I	GGWCC	1 cut(s)	892
BmgT120I	GGNCC	1 cut(s)	892
BmiI	GGNNCC	1 cut(s)	948
BmrFI	CCNGG	1 cut(s)	39
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	3 cut(s)	40, 416, 860
BmuI	ACTGGG	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	748
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	687
BsaWI	WCCGGW	2 cut(s)	387, 949
Bsc4I	CCNNNNNNNGG	1 cut(s)	804
Bse1I	ACTGG	2 cut(s)	131, 656
Bse3DI	GCAATG	1 cut(s)	957
BseAI	TCCGGA	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	687
BseGI	GGATG	4 cut(s)	34, 310, 351, 353
BseLI	CCNNNNNNNGG	1 cut(s)	804
BseMI	GCAATG	1 cut(s)	957
BseMII	CTCAG	2 cut(s)	189, 677
BseNI	ACTGG	2 cut(s)	131, 656
BseRI	GAGGAG	1 cut(s)	704
BseXI	GCAGC	3 cut(s)	487, 490, 768
BshFI	GGCC	1 cut(s)	553
BshNI	GGYRCC	1 cut(s)	946
BsiHKAI	GWGCWC	2 cut(s)	353, 602
BsiSI	CCGG	2 cut(s)	388, 950
BslFI	GGGAC	1 cut(s)	876
BslI	CCNNNNNNNGG	1 cut(s)	804
BsmAI	GTCTC	2 cut(s)	52, 534
BsmFI	GGGAC	1 cut(s)	876
BsmI	GAATGC	1 cut(s)	701
BsnI	GGCC	1 cut(s)	553
Bso31I	GGTCTC	1 cut(s)	52
Bsp1286I	GDGCHC	2 cut(s)	353, 602
Bsp13I	TCCGGA	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	250, 268
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	1 cut(s)	553
BspCNI	CTCAG	2 cut(s)	190, 676
BspEI	TCCGGA	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	948
BspMI	ACCTGC	1 cut(s)	934
BspQI	GCTCTTC	2 cut(s)	443, 590
BspT107I	GGYRCC	1 cut(s)	946
BspTNI	GGTCTC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	957
BsrI	ACTGG	2 cut(s)	131, 656
BssECI	CCNNGG	1 cut(s)	687
BssMI	GATC	2 cut(s)	250, 268
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	5 cut(s)	74, 608, 728, 751, 839
Bst6I	CTCTTC	2 cut(s)	443, 590
BstC8I	GCNNGC	1 cut(s)	915
BstDEI	CTNAG	3 cut(s)	198, 663, 737
BstF5I	GGATG	4 cut(s)	34, 310, 351, 353
BstKTI	GATC	2 cut(s)	253, 271
BstMAI	GTCTC	2 cut(s)	52, 534
BstMBI	GATC	2 cut(s)	250, 268
BstNI	CCWGG	1 cut(s)	39
BstNSI	RCATGY	1 cut(s)	921
BstSCI	CCNGG	1 cut(s)	37
BstV1I	GCAGC	3 cut(s)	487, 490, 768
BstV2I	GAAGAC	1 cut(s)	748
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	553
BtsCI	GGATG	4 cut(s)	34, 310, 351, 353
BtsIMutI	CAGTG	2 cut(s)	66, 613
BveI	ACCTGC	1 cut(s)	934
Cac8I	GCNNGC	1 cut(s)	915
Cfr13I	GGNCC	1 cut(s)	892
Csp6I	GTAC	3 cut(s)	120, 886, 947
CviAII	CATG	2 cut(s)	785, 918
CviQI	GTAC	3 cut(s)	120, 886, 947
DdeI	CTNAG	3 cut(s)	198, 663, 737
DpnI	GATC	2 cut(s)	252, 270
DpnII	GATC	2 cut(s)	250, 268
Eam1104I	CTCTTC	2 cut(s)	443, 590
EarI	CTCTTC	2 cut(s)	443, 590
Ecl136II	GAGCTC	2 cut(s)	351, 600
Eco24I	GRGCYC	2 cut(s)	353, 602
Eco31I	GGTCTC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	892
Eco53kI	GAGCTC	2 cut(s)	351, 600
EcoICRI	GAGCTC	2 cut(s)	351, 600
EcoRII	CCWGG	1 cut(s)	37
EcoT38I	GRGCYC	2 cut(s)	353, 602
FaeI	CATG	2 cut(s)	788, 921
FaiI	YATR	8 cut(s)	85, 169, 291, 587, 639, 786, 794, 919
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FaqI	GGGAC	1 cut(s)	876
FatI	CATG	2 cut(s)	784, 917
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	3 cut(s)	476, 479, 782
FokI	GGATG	4 cut(s)	21, 317, 340, 358
FriOI	GRGCYC	2 cut(s)	353, 602
Fsp4HI	GCNGC	3 cut(s)	476, 479, 782
FspBI	CTAG	2 cut(s)	378, 984
GluI	GCNGC	3 cut(s)	476, 479, 782
HaeIII	GGCC	1 cut(s)	553
HapII	CCGG	2 cut(s)	388, 950
Hin1II	CATG	2 cut(s)	788, 921
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	4 cut(s)	88, 311, 522, 933
HpaII	CCGG	2 cut(s)	388, 950
HphI	GGTGA	3 cut(s)	554, 676, 835
Hpy166II	GTNNAC	3 cut(s)	439, 886, 923
Hpy188I	TCNGA	5 cut(s)	199, 286, 316, 331, 673
Hpy188III	TCNNGA	2 cut(s)	272, 388
Hpy8I	GTNNAC	3 cut(s)	439, 886, 923
HpyAV	CCTTC	2 cut(s)	73, 853
HpyCH4III	ACNGT	5 cut(s)	74, 608, 728, 751, 839
HpyF3I	CTNAG	3 cut(s)	198, 663, 737
Hsp92II	CATG	2 cut(s)	788, 921
Kpn2I	TCCGGA	1 cut(s)	387
KpnI	GGTACC	1 cut(s)	950
Kzo9I	GATC	2 cut(s)	250, 268
LguI	GCTCTTC	2 cut(s)	443, 590
Lsp1109I	GCAGC	3 cut(s)	487, 490, 768
LweI	GCATC	3 cut(s)	40, 416, 860
MaeI	CTAG	2 cut(s)	378, 984
MaeIII	GTNAC	3 cut(s)	640, 677, 728
MalI	GATC	2 cut(s)	252, 270
MboI	GATC	2 cut(s)	250, 268
MboII	GAAGA	8 cut(s)	278, 329, 365, 457, 460, 607, 753, 800
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	2 cut(s)	353, 602
MluCI	AATT	4 cut(s)	556, 588, 634, 902
MlyI	GAGTC	3 cut(s)	82, 531, 927
MmeI	TCCRAC	1 cut(s)	487
MnlI	CCTC	9 cut(s)	209, 221, 331, 454, 682, 685, 819, 946, 966
MroI	TCCGGA	1 cut(s)	387
MseI	TTAA	4 cut(s)	467, 591, 938, 977
MspI	CCGG	2 cut(s)	388, 950
MspR9I	CCNGG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	701
MvaI	CCWGG	1 cut(s)	39
NdeII	GATC	2 cut(s)	250, 268
NlaIII	CATG	2 cut(s)	788, 921
NlaIV	GGNNCC	1 cut(s)	948
NmuCI	GTSAC	3 cut(s)	640, 677, 728
NspI	RCATGY	1 cut(s)	921
PciSI	GCTCTTC	2 cut(s)	443, 590
PctI	GAATGC	1 cut(s)	701
PfeI	GAWTC	1 cut(s)	311
PflMI	CCANNNNNTGG	1 cut(s)	804
PkrI	GCNGC	3 cut(s)	477, 480, 783
PleI	GAGTC	3 cut(s)	82, 530, 927
PpsI	GAGTC	3 cut(s)	82, 530, 927
Psp124BI	GAGCTC	2 cut(s)	353, 602
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	948
PspPI	GGNCC	1 cut(s)	892
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	3 cut(s)	121, 887, 948
RsaNI	GTAC	3 cut(s)	120, 886, 947
SacI	GAGCTC	2 cut(s)	353, 602
SapI	GCTCTTC	2 cut(s)	443, 590
SaqAI	TTAA	4 cut(s)	467, 591, 938, 977
SatI	GCNGC	3 cut(s)	476, 479, 782
Sau3AI	GATC	2 cut(s)	250, 268
Sau96I	GGNCC	1 cut(s)	892
SchI	GAGTC	3 cut(s)	82, 531, 927
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	2 cut(s)	353, 602
SfaNI	GCATC	3 cut(s)	40, 416, 860
SinI	GGWCC	1 cut(s)	892
Sse9I	AATT	4 cut(s)	556, 588, 634, 902
SsiI	CCGC	1 cut(s)	206
SspI	AATATT	1 cut(s)	614
SspMI	CTAG	2 cut(s)	378, 984
SstI	GAGCTC	2 cut(s)	353, 602
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	5 cut(s)	74, 608, 728, 751, 839
TaqI	TCGA	2 cut(s)	6, 91
TasI	AATT	4 cut(s)	556, 588, 634, 902
TatI	WGTACW	1 cut(s)	885
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	4 cut(s)	467, 591, 938, 977
Tru9I	TTAA	4 cut(s)	467, 591, 938, 977
TscAI	CASTG	2 cut(s)	73, 613
TseFI	GTSAC	3 cut(s)	640, 677, 728
TseI	GCWGC	3 cut(s)	475, 478, 781
Tsp45I	GTSAC	3 cut(s)	640, 677, 728
TspDTI	ATGAA	3 cut(s)	306, 485, 801
TspGWI	ACGGA	1 cut(s)	880
TspRI	CASTG	2 cut(s)	73, 613
Van91I	CCANNNNNTGG	1 cut(s)	804
VpaK11BI	GGWCC	1 cut(s)	892
XceI	RCATGY	1 cut(s)	921
XmiI	GTMKAC	1 cut(s)	438
XspI	CTAG	2 cut(s)	378, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.