regulation of transcription by RNA polymerase I
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g26473 FvH4_6g52630 FvH4_7g09440 |
| malus_domestica | MD15G1414400.v1.1 MD15G1414500.v1.1 |
| rosa_chinensis | RchiOBHm_Chr1g0336751 RchiOBHm_Chr1g0346081 |
| rosa_laevigata | RLG00000028815 |
| rosa_multiflora | Rmu_sc0000907.1_g000013 Rmu_sc0003809.1_g000021 Rmu_ssc0000255.1_g000071 |
| rosa_roxburghii | Rroxscaffold_4G00308830 |
| rosa_rugosa | Rorug01G0177900 |
| rosa_samantha | Rh1AG148800 Rh1AG197400 Rh1BG162700 Rh1CG182400 Rh1DG193300 Rh2CG357500 Rh6BG094500 |
| rosa_wichuraiana | Rw1G016340 Rw1G016570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 511 |
| Acc36I | ACCTGC | 1 cut(s) | 466 |
| Acc65I | GGTACC | 1 cut(s) | 478 |
| AccB1I | GGYRCC | 1 cut(s) | 478 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 336 |
| AfaI | GTAC | 2 cut(s) | 419, 480 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 336 |
| AgsI | TTSAA | 2 cut(s) | 113, 296 |
| AluBI | AGCT | 2 cut(s) | 132, 199 |
| AluI | AGCT | 2 cut(s) | 132, 199 |
| Alw21I | GWGCWC | 1 cut(s) | 134 |
| Alw26I | GTCTC | 1 cut(s) | 66 |
| ApeKI | GCWGC | 3 cut(s) | 7, 10, 313 |
| Asp718I | GGTACC | 1 cut(s) | 478 |
| AspS9I | GGNCC | 1 cut(s) | 424 |
| AsuHPI | GGTGA | 3 cut(s) | 86, 208, 367 |
| AvaII | GGWCC | 1 cut(s) | 424 |
| BanI | GGYRCC | 1 cut(s) | 478 |
| BanII | GRGCYC | 1 cut(s) | 134 |
| BbsI | GAAGAC | 1 cut(s) | 280 |
| Bbv12I | GWGCWC | 1 cut(s) | 134 |
| BbvI | GCAGC | 3 cut(s) | 19, 22, 300 |
| BcoDI | GTCTC | 1 cut(s) | 66 |
| BfuAI | ACCTGC | 1 cut(s) | 466 |
| BisI | GCNGC | 3 cut(s) | 8, 11, 314 |
| BlsI | GCNGC | 3 cut(s) | 9, 12, 315 |
| Bme18I | GGWCC | 1 cut(s) | 424 |
| BmgT120I | GGNCC | 1 cut(s) | 424 |
| BmiI | GGNNCC | 1 cut(s) | 480 |
| BmsI | GCATC | 1 cut(s) | 392 |
| BpiI | GAAGAC | 1 cut(s) | 280 |
| BsaJI | CCNNGG | 1 cut(s) | 219 |
| BsaWI | WCCGGW | 1 cut(s) | 481 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 336 |
| Bse1I | ACTGG | 1 cut(s) | 188 |
| Bse3DI | GCAATG | 1 cut(s) | 489 |
| BseDI | CCNNGG | 1 cut(s) | 219 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 336 |
| BseMI | GCAATG | 1 cut(s) | 489 |
| BseMII | CTCAG | 1 cut(s) | 209 |
| BseNI | ACTGG | 1 cut(s) | 188 |
| BseRI | GAGGAG | 1 cut(s) | 236 |
| BseXI | GCAGC | 3 cut(s) | 19, 22, 300 |
| BshNI | GGYRCC | 1 cut(s) | 478 |
| BsiHKAI | GWGCWC | 1 cut(s) | 134 |
| BsiSI | CCGG | 1 cut(s) | 482 |
| BslFI | GGGAC | 1 cut(s) | 408 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 336 |
| BsmAI | GTCTC | 1 cut(s) | 66 |
| BsmFI | GGGAC | 1 cut(s) | 408 |
| BsmI | GAATGC | 1 cut(s) | 233 |
| Bsp1286I | GDGCHC | 1 cut(s) | 134 |
| BspCNI | CTCAG | 1 cut(s) | 208 |
| BspLI | GGNNCC | 1 cut(s) | 480 |
| BspMI | ACCTGC | 1 cut(s) | 466 |
| BspQI | GCTCTTC | 1 cut(s) | 122 |
| BspT107I | GGYRCC | 1 cut(s) | 478 |
| BsrDI | GCAATG | 1 cut(s) | 489 |
| BsrI | ACTGG | 1 cut(s) | 188 |
| BssECI | CCNNGG | 1 cut(s) | 219 |
| Bst4CI | ACNGT | 4 cut(s) | 140, 260, 283, 371 |
| Bst6I | CTCTTC | 1 cut(s) | 122 |
| BstC8I | GCNNGC | 1 cut(s) | 447 |
| BstDEI | CTNAG | 2 cut(s) | 195, 269 |
| BstMAI | GTCTC | 1 cut(s) | 66 |
| BstNSI | RCATGY | 1 cut(s) | 453 |
| BstV1I | GCAGC | 3 cut(s) | 19, 22, 300 |
| BstV2I | GAAGAC | 1 cut(s) | 280 |
| BtsIMutI | CAGTG | 1 cut(s) | 145 |
| BveI | ACCTGC | 1 cut(s) | 466 |
| Cac8I | GCNNGC | 1 cut(s) | 447 |
| Cfr13I | GGNCC | 1 cut(s) | 424 |
| Csp6I | GTAC | 2 cut(s) | 418, 479 |
| CviAII | CATG | 2 cut(s) | 317, 450 |
| CviJI | RGCY | 3 cut(s) | 13, 132, 199 |
| CviKI_1 | RGCY | 3 cut(s) | 13, 132, 199 |
| CviQI | GTAC | 2 cut(s) | 418, 479 |
| DdeI | CTNAG | 2 cut(s) | 195, 269 |
| Eam1104I | CTCTTC | 1 cut(s) | 122 |
| EarI | CTCTTC | 1 cut(s) | 122 |
| Ecl136II | GAGCTC | 1 cut(s) | 132 |
| Eco24I | GRGCYC | 1 cut(s) | 134 |
| Eco47I | GGWCC | 1 cut(s) | 424 |
| Eco53kI | GAGCTC | 1 cut(s) | 132 |
| EcoICRI | GAGCTC | 1 cut(s) | 132 |
| EcoT38I | GRGCYC | 1 cut(s) | 134 |
| FaeI | CATG | 2 cut(s) | 320, 453 |
| FaiI | YATR | 6 cut(s) | 119, 171, 318, 326, 451, 511 |
| FaqI | GGGAC | 1 cut(s) | 408 |
| FatI | CATG | 2 cut(s) | 316, 449 |
| Fnu4HI | GCNGC | 3 cut(s) | 8, 11, 314 |
| FriOI | GRGCYC | 1 cut(s) | 134 |
| Fsp4HI | GCNGC | 3 cut(s) | 8, 11, 314 |
| GluI | GCNGC | 3 cut(s) | 8, 11, 314 |
| HapII | CCGG | 1 cut(s) | 482 |
| Hin1II | CATG | 2 cut(s) | 320, 453 |
| HinfI | GANTC | 2 cut(s) | 54, 465 |
| HpaII | CCGG | 1 cut(s) | 482 |
| HphI | GGTGA | 3 cut(s) | 86, 208, 367 |
| Hpy166II | GTNNAC | 2 cut(s) | 418, 455 |
| Hpy188I | TCNGA | 1 cut(s) | 205 |
| Hpy8I | GTNNAC | 2 cut(s) | 418, 455 |
| HpyAV | CCTTC | 1 cut(s) | 385 |
| HpyCH4III | ACNGT | 4 cut(s) | 140, 260, 283, 371 |
| HpyCH4V | TGCA | 8 cut(s) | 104, 154, 231, 241, 316, 364, 494, 502 |
| HpyF3I | CTNAG | 2 cut(s) | 195, 269 |
| Hsp92II | CATG | 2 cut(s) | 320, 453 |
| KpnI | GGTACC | 1 cut(s) | 482 |
| LguI | GCTCTTC | 1 cut(s) | 122 |
| LpnPI | CCDG | 4 cut(s) | 27, 201, 461, 495 |
| Lsp1109I | GCAGC | 3 cut(s) | 19, 22, 300 |
| LweI | GCATC | 1 cut(s) | 392 |
| MaeIII | GTNAC | 3 cut(s) | 172, 209, 260 |
| MboII | GAAGA | 3 cut(s) | 139, 285, 332 |
| MhlI | GDGCHC | 1 cut(s) | 134 |
| MluCI | AATT | 4 cut(s) | 88, 120, 166, 434 |
| MlyI | GAGTC | 1 cut(s) | 63 |
| MmeI | TCCRAC | 1 cut(s) | 19 |
| MnlI | CCTC | 5 cut(s) | 214, 217, 351, 478, 498 |
| MseI | TTAA | 2 cut(s) | 123, 470 |
| MspI | CCGG | 1 cut(s) | 482 |
| Mva1269I | GAATGC | 1 cut(s) | 233 |
| NlaIII | CATG | 2 cut(s) | 320, 453 |
| NlaIV | GGNNCC | 1 cut(s) | 480 |
| NmuCI | GTSAC | 3 cut(s) | 172, 209, 260 |
| NspI | RCATGY | 1 cut(s) | 453 |
| PciSI | GCTCTTC | 1 cut(s) | 122 |
| PctI | GAATGC | 1 cut(s) | 233 |
| PfeI | GAWTC | 1 cut(s) | 465 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 336 |
| PkrI | GCNGC | 3 cut(s) | 9, 12, 315 |
| PleI | GAGTC | 1 cut(s) | 62 |
| PpsI | GAGTC | 1 cut(s) | 62 |
| PsiI | TTATAA | 1 cut(s) | 511 |
| Psp124BI | GAGCTC | 1 cut(s) | 134 |
| PspN4I | GGNNCC | 1 cut(s) | 480 |
| PspPI | GGNCC | 1 cut(s) | 424 |
| RsaI | GTAC | 2 cut(s) | 419, 480 |
| RsaNI | GTAC | 2 cut(s) | 418, 479 |
| SacI | GAGCTC | 1 cut(s) | 134 |
| SapI | GCTCTTC | 1 cut(s) | 122 |
| SaqAI | TTAA | 2 cut(s) | 123, 470 |
| SatI | GCNGC | 3 cut(s) | 8, 11, 314 |
| Sau96I | GGNCC | 1 cut(s) | 424 |
| SchI | GAGTC | 1 cut(s) | 63 |
| SduI | GDGCHC | 1 cut(s) | 134 |
| SetI | ASST | 7 cut(s) | 134, 201, 280, 362, 480, 489, 509 |
| SfaNI | GCATC | 1 cut(s) | 392 |
| SinI | GGWCC | 1 cut(s) | 424 |
| Sse9I | AATT | 4 cut(s) | 88, 120, 166, 434 |
| SspI | AATATT | 1 cut(s) | 146 |
| SstI | GAGCTC | 1 cut(s) | 134 |
| TaaI | ACNGT | 4 cut(s) | 140, 260, 283, 371 |
| TasI | AATT | 4 cut(s) | 88, 120, 166, 434 |
| TatI | WGTACW | 1 cut(s) | 417 |
| TfiI | GAWTC | 1 cut(s) | 465 |
| Tru1I | TTAA | 2 cut(s) | 123, 470 |
| Tru9I | TTAA | 2 cut(s) | 123, 470 |
| TscAI | CASTG | 1 cut(s) | 145 |
| TseFI | GTSAC | 3 cut(s) | 172, 209, 260 |
| TseI | GCWGC | 3 cut(s) | 7, 10, 313 |
| Tsp45I | GTSAC | 3 cut(s) | 172, 209, 260 |
| TspDTI | ATGAA | 2 cut(s) | 17, 333 |
| TspGWI | ACGGA | 1 cut(s) | 412 |
| TspRI | CASTG | 1 cut(s) | 145 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 336 |
| VpaK11BI | GGWCC | 1 cut(s) | 424 |
| XceI | RCATGY | 1 cut(s) | 453 |