Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0009668

Physical Location & Seq

Genomic Coordinates Reverse (-)

36725243 .. 36726614

Gene Structure 1372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G016570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCTCAGTAATACGTGGTCAATTATTTGCTTGACACGTGGAAGAACTGTGGCCGCTGAACATAGTTACCTAAAAGTTCATCATCCTGGTAATTGTGTAGGGAAAATGAGACCCTTAACTGACGGTGGAAAGCTATGGACTCGAAATAGGCAATCTTGTTCGGTGTGTGGTACAAGAACCCCAGTAAAGATTTCTTGCTTTTGTTGTGCAAAAGTGTTATGTGGAAAGTGCCGTGTTAGTAGTGCTTCTGAGTTTGCGGTGGTTATAGGAAATAAAAGAGGCATTTGCAAGAGCTGTTTAGATCTTGTTCTGCTTGAAGATCAAGAAAGCTCATCGGAATATGAAAGCGAAAGGGATGATGATTCGGAAGAAATCACTTCGGAAGTTGAGGACAGGATGAGCTCATCCAAAGTGCCTATCAATCTTCCTAGCAATATCCGGAATAAAAGTTGTTTTGCATCTTTGGTTGCTGATAATATCAAGCTTGTCTACTTGAAGAAGAGCTTGGTGGAGGAGTTAATGAAGCAGCAGCCTGATTGTTGGGAAAGAAAAGTAGTTGGAAGTTTTGTGAGAGTCAAAACTGACCCAAGAGACTATTTTAGGACAAATTATCACCAACTTGCAGAAGTTCAAGGCATAATTAAGAAGAGCTCAAACAGTGAATATTTCTTGCAAGTGTTATCCAATTATGTGACAAGAGATATTCCAGTTTCTCAGCTTTCGGATTGTGACTTCACCGAGGAGGAATGCAAGGATTTGCAACAAGATGTGGCAAACTGTCACTTGCTAAGAAGACCTACTGTTTTTGAGTTTGAACACAAGGCAAGAGTGCTGCATGAAGATATAACCAAGCATTGGATTAAGAGTGAGTTGGTGAGGTTGCAGAACTGTGTTGATTGGGCAAATGAGAAGGGACGGAGATGCGAGTTATTTGTGTACTTGGACCAAAGAGAATTGCTAAAGCAAGCATGTGAACAAGAGCGACTCTTAAAGCAGGTACCGGAGGTCATTGCAGATTTGCAGAGGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plus-3 SWIB

Protein Analysis

343

Amino Acids

39.42

Weight (kDa)

7.43

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plus-3	PF03126	159 - 257	8.5e-13	Plus-3 domain
NERD_plant	PF25980	280 - 329	1.7e-21	Plant NERD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009668)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26473 FvH4_6g52630 FvH4_7g09440
malus_domestica	MD15G1414400.v1.1 MD15G1414500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0336751 RchiOBHm_Chr1g0346081
rosa_laevigata	RLG00000028815
rosa_multiflora	Rmu_sc0000907.1_g000013 Rmu_sc0003809.1_g000021 Rmu_ssc0000255.1_g000071
rosa_roxburghii	Rroxscaffold_4G00308830
rosa_rugosa	Rorug01G0177900
rosa_samantha	Rh1AG148800 Rh1AG197400 Rh1BG162700 Rh1CG182400 Rh1DG193300 Rh2CG357500 Rh6BG094500
rosa_wichuraiana	Rw1G016340 Rw1G016570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1030
Acc36I	ACCTGC	1 cut(s)	985
Acc65I	GGTACC	1 cut(s)	997
AccB1I	GGYRCC	1 cut(s)	997
AccB7I	CCANNNNNTGG	1 cut(s)	855
AccI	GTMKAC	1 cut(s)	489
AccIII	TCCGGA	1 cut(s)	438
AciI	CCGC	2 cut(s)	54, 257
AcoI	YGGCCR	1 cut(s)	51
AcvI	CACGTG	1 cut(s)	38
AfaI	GTAC	3 cut(s)	172, 938, 999
AfiI	CCNNNNNNNGG	1 cut(s)	855
AflIII	ACRYGT	1 cut(s)	35
AgsI	TTSAA	4 cut(s)	317, 496, 632, 815
AjnI	CCWGG	1 cut(s)	85
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
AluBI	AGCT	8 cut(s)	133, 294, 330, 402, 484, 504, 651, 718
AluI	AGCT	8 cut(s)	133, 294, 330, 402, 484, 504, 651, 718
Alw21I	GWGCWC	2 cut(s)	404, 653
Alw26I	GTCTC	2 cut(s)	103, 585
Aor13HI	TCCGGA	1 cut(s)	438
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	3 cut(s)	526, 529, 832
Asp718I	GGTACC	1 cut(s)	997
AspS9I	GGNCC	1 cut(s)	943
AsuHPI	GGTGA	3 cut(s)	605, 727, 886
AvaII	GGWCC	1 cut(s)	943
BanI	GGYRCC	1 cut(s)	997
BanII	GRGCYC	2 cut(s)	404, 653
BbrPI	CACGTG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	799
Bbv12I	GWGCWC	2 cut(s)	404, 653
BbvI	GCAGC	3 cut(s)	538, 541, 819
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	103, 585
BfaI	CTAG	1 cut(s)	429
BfuAI	ACCTGC	1 cut(s)	985
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	4 cut(s)	54, 527, 530, 833
BlsI	GCNGC	4 cut(s)	55, 528, 531, 834
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	943
BmgT120I	GGNCC	1 cut(s)	943
BmiI	GGNNCC	1 cut(s)	999
BmrFI	CCNGG	1 cut(s)	87
BmrI	ACTGGG	1 cut(s)	176
BmsI	GCATC	2 cut(s)	467, 911
BmuI	ACTGGG	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	799
BsaAI	YACGTR	2 cut(s)	15, 38
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	738
BsaWI	WCCGGW	2 cut(s)	438, 1000
Bsc4I	CCNNNNNNNGG	1 cut(s)	855
Bse1I	ACTGG	2 cut(s)	182, 707
Bse3DI	GCAATG	1 cut(s)	1008
BseAI	TCCGGA	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	738
BseGI	GGATG	4 cut(s)	82, 361, 402, 404
BseLI	CCNNNNNNNGG	1 cut(s)	855
BseMI	GCAATG	1 cut(s)	1008
BseMII	CTCAG	3 cut(s)	19, 240, 728
BseNI	ACTGG	2 cut(s)	182, 707
BseRI	GAGGAG	2 cut(s)	527, 755
BseXI	GCAGC	3 cut(s)	538, 541, 819
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	997
BsiHKAI	GWGCWC	2 cut(s)	404, 653
BsiSI	CCGG	2 cut(s)	439, 1001
BslFI	GGGAC	1 cut(s)	927
BslI	CCNNNNNNNGG	1 cut(s)	855
BsmAI	GTCTC	2 cut(s)	103, 585
BsmFI	GGGAC	1 cut(s)	927
BsmI	GAATGC	1 cut(s)	752
BsnI	GGCC	1 cut(s)	53
Bso31I	GGTCTC	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	404, 653
Bsp13I	TCCGGA	1 cut(s)	438
Bsp143I	GATC	2 cut(s)	301, 319
BspACI	CCGC	2 cut(s)	54, 257
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	3 cut(s)	18, 241, 727
BspEI	TCCGGA	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	999
BspMI	ACCTGC	1 cut(s)	985
BspQI	GCTCTTC	2 cut(s)	494, 641
BspT107I	GGYRCC	1 cut(s)	997
BspTNI	GGTCTC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	1008
BsrI	ACTGG	2 cut(s)	182, 707
BssECI	CCNNGG	1 cut(s)	738
BssMI	GATC	2 cut(s)	301, 319
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	6 cut(s)	49, 125, 659, 779, 802, 890
Bst6I	CTCTTC	2 cut(s)	494, 641
BstBAI	YACGTR	2 cut(s)	15, 38
BstC8I	GCNNGC	1 cut(s)	966
BstDEI	CTNAG	4 cut(s)	5, 249, 714, 788
BstF5I	GGATG	4 cut(s)	82, 361, 402, 404
BstKTI	GATC	2 cut(s)	304, 322
BstMAI	GTCTC	2 cut(s)	103, 585
BstMBI	GATC	2 cut(s)	301, 319
BstNI	CCWGG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	972
BstSCI	CCNGG	1 cut(s)	85
BstV1I	GCAGC	3 cut(s)	538, 541, 819
BstV2I	GAAGAC	1 cut(s)	799
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	4 cut(s)	82, 361, 402, 404
BtsIMutI	CAGTG	1 cut(s)	664
BveI	ACCTGC	1 cut(s)	985
Cac8I	GCNNGC	1 cut(s)	966
Cfr13I	GGNCC	1 cut(s)	943
Csp6I	GTAC	3 cut(s)	171, 937, 998
CviAII	CATG	2 cut(s)	836, 969
CviQI	GTAC	3 cut(s)	171, 937, 998
DdeI	CTNAG	4 cut(s)	5, 249, 714, 788
DpnI	GATC	2 cut(s)	303, 321
DpnII	GATC	2 cut(s)	301, 319
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	2 cut(s)	494, 641
EarI	CTCTTC	2 cut(s)	494, 641
Ecl136II	GAGCTC	2 cut(s)	402, 651
Eco24I	GRGCYC	2 cut(s)	404, 653
Eco31I	GGTCTC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	943
Eco53kI	GAGCTC	2 cut(s)	402, 651
Eco72I	CACGTG	1 cut(s)	38
EcoICRI	GAGCTC	2 cut(s)	402, 651
EcoRII	CCWGG	1 cut(s)	85
EcoT38I	GRGCYC	2 cut(s)	404, 653
FaeI	CATG	2 cut(s)	839, 972
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FaqI	GGGAC	1 cut(s)	927
FatI	CATG	2 cut(s)	835, 968
FblI	GTMKAC	1 cut(s)	489
Fnu4HI	GCNGC	4 cut(s)	54, 527, 530, 833
FokI	GGATG	4 cut(s)	69, 368, 391, 409
FriOI	GRGCYC	2 cut(s)	404, 653
Fsp4HI	GCNGC	4 cut(s)	54, 527, 530, 833
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	4 cut(s)	54, 527, 530, 833
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	2 cut(s)	439, 1001
Hin1II	CATG	2 cut(s)	839, 972
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	4 cut(s)	139, 362, 573, 984
HpaII	CCGG	2 cut(s)	439, 1001
HphI	GGTGA	3 cut(s)	605, 727, 886
Hpy166II	GTNNAC	3 cut(s)	490, 937, 974
Hpy188I	TCNGA	5 cut(s)	250, 337, 367, 382, 724
Hpy188III	TCNNGA	2 cut(s)	323, 439
Hpy8I	GTNNAC	3 cut(s)	490, 937, 974
HpyAV	CCTTC	1 cut(s)	904
HpyCH4III	ACNGT	6 cut(s)	49, 125, 659, 779, 802, 890
HpyCH4IV	ACGT	2 cut(s)	14, 37
HpyF3I	CTNAG	4 cut(s)	5, 249, 714, 788
HpySE526I	ACGT	2 cut(s)	14, 37
Hsp92II	CATG	2 cut(s)	839, 972
Kpn2I	TCCGGA	1 cut(s)	438
KpnI	GGTACC	1 cut(s)	1001
Kzo9I	GATC	2 cut(s)	301, 319
LguI	GCTCTTC	2 cut(s)	494, 641
LpnPI	CCDG	9 cut(s)	72, 99, 195, 379, 452, 546, 720, 980, 1014
Lsp1109I	GCAGC	3 cut(s)	538, 541, 819
LweI	GCATC	2 cut(s)	467, 911
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	2 cut(s)	14, 37
MaeIII	GTNAC	4 cut(s)	65, 691, 728, 779
MalI	GATC	2 cut(s)	303, 321
MboI	GATC	2 cut(s)	301, 319
MboII	GAAGA	9 cut(s)	54, 329, 380, 416, 508, 511, 658, 804, 851
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	2 cut(s)	404, 653
MluCI	AATT	6 cut(s)	21, 91, 607, 639, 685, 953
MlyI	GAGTC	3 cut(s)	133, 582, 978
MmeI	TCCRAC	1 cut(s)	538
MnlI	CCTC	8 cut(s)	272, 382, 505, 733, 736, 870, 997, 1017
MroI	TCCGGA	1 cut(s)	438
MseI	TTAA	5 cut(s)	116, 518, 642, 861, 989
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	2 cut(s)	439, 1001
MspR9I	CCNGG	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	752
MvaI	CCWGG	1 cut(s)	87
NdeII	GATC	2 cut(s)	301, 319
NlaIII	CATG	2 cut(s)	839, 972
NlaIV	GGNNCC	1 cut(s)	999
NmuCI	GTSAC	3 cut(s)	691, 728, 779
NspI	RCATGY	1 cut(s)	972
PciSI	GCTCTTC	2 cut(s)	494, 641
PctI	GAATGC	1 cut(s)	752
PfeI	GAWTC	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	855
PkrI	GCNGC	4 cut(s)	55, 528, 531, 834
PleI	GAGTC	3 cut(s)	133, 581, 978
PmaCI	CACGTG	1 cut(s)	38
PmlI	CACGTG	1 cut(s)	38
PpsI	GAGTC	3 cut(s)	133, 581, 978
Ppu21I	YACGTR	2 cut(s)	15, 38
PsiI	TTATAA	1 cut(s)	1030
Psp124BI	GAGCTC	2 cut(s)	404, 653
Psp6I	CCWGG	1 cut(s)	85
PspCI	CACGTG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	999
PspPI	GGNCC	1 cut(s)	943
PsuI	RGATCY	1 cut(s)	301
RsaI	GTAC	3 cut(s)	172, 938, 999
RsaNI	GTAC	3 cut(s)	171, 937, 998
SacI	GAGCTC	2 cut(s)	404, 653
SapI	GCTCTTC	2 cut(s)	494, 641
SaqAI	TTAA	5 cut(s)	116, 518, 642, 861, 989
SatI	GCNGC	4 cut(s)	54, 527, 530, 833
Sau3AI	GATC	2 cut(s)	301, 319
Sau96I	GGNCC	1 cut(s)	943
SchI	GAGTC	3 cut(s)	133, 582, 978
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	2 cut(s)	404, 653
SfaNI	GCATC	2 cut(s)	467, 911
SinI	GGWCC	1 cut(s)	943
Sse9I	AATT	6 cut(s)	21, 91, 607, 639, 685, 953
SsiI	CCGC	2 cut(s)	54, 257
SspI	AATATT	1 cut(s)	665
SspMI	CTAG	1 cut(s)	429
SstI	GAGCTC	2 cut(s)	404, 653
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	6 cut(s)	49, 125, 659, 779, 802, 890
TaiI	ACGT	2 cut(s)	17, 40
TaqI	TCGA	1 cut(s)	142
TasI	AATT	6 cut(s)	21, 91, 607, 639, 685, 953
TatI	WGTACW	1 cut(s)	936
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	5 cut(s)	116, 518, 642, 861, 989
Tru9I	TTAA	5 cut(s)	116, 518, 642, 861, 989
TscAI	CASTG	1 cut(s)	664
TseFI	GTSAC	3 cut(s)	691, 728, 779
TseI	GCWGC	3 cut(s)	526, 529, 832
Tsp45I	GTSAC	3 cut(s)	691, 728, 779
TspDTI	ATGAA	4 cut(s)	68, 357, 536, 852
TspGWI	ACGGA	1 cut(s)	931
TspRI	CASTG	1 cut(s)	664
Van91I	CCANNNNNTGG	1 cut(s)	855
VpaK11BI	GGWCC	1 cut(s)	943
XceI	RCATGY	1 cut(s)	972
XmiI	GTMKAC	1 cut(s)	489
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.