regulation of transcription by RNA polymerase I
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g26473 FvH4_6g52630 FvH4_7g09440 |
| malus_domestica | MD15G1414400.v1.1 MD15G1414500.v1.1 |
| rosa_chinensis | RchiOBHm_Chr1g0336751 RchiOBHm_Chr1g0346081 |
| rosa_laevigata | RLG00000028815 |
| rosa_multiflora | Rmu_sc0000907.1_g000013 Rmu_sc0003809.1_g000021 Rmu_ssc0000255.1_g000071 |
| rosa_roxburghii | Rroxscaffold_4G00308830 |
| rosa_rugosa | Rorug01G0177900 |
| rosa_samantha | Rh1AG148800 Rh1AG197400 Rh1BG162700 Rh1CG182400 Rh1DG193300 Rh2CG357500 Rh6BG094500 |
| rosa_wichuraiana | Rw1G016340 Rw1G016570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 753 |
| AccI | GTMKAC | 1 cut(s) | 387 |
| AclWI | GGATC | 1 cut(s) | 476 |
| AcsI | RAATTY | 2 cut(s) | 298, 505 |
| AcuI | CTGAAG | 1 cut(s) | 282 |
| AfaI | GTAC | 1 cut(s) | 836 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 753 |
| AgsI | TTSAA | 5 cut(s) | 212, 303, 394, 530, 713 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 386, 418 |
| Alw21I | GWGCWC | 1 cut(s) | 551 |
| Alw26I | GTCTC | 2 cut(s) | 483, 805 |
| AlwI | GGATC | 1 cut(s) | 476 |
| ApeKI | GCWGC | 4 cut(s) | 126, 424, 427, 730 |
| ApoI | RAATTY | 2 cut(s) | 298, 505 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 298 |
| AspS9I | GGNCC | 1 cut(s) | 841 |
| AsuHPI | GGTGA | 3 cut(s) | 503, 625, 784 |
| AvaII | GGWCC | 1 cut(s) | 841 |
| BanII | GRGCYC | 1 cut(s) | 551 |
| BbsI | GAAGAC | 1 cut(s) | 697 |
| Bbv12I | GWGCWC | 1 cut(s) | 551 |
| BbvI | GCAGC | 4 cut(s) | 113, 411, 439, 717 |
| BccI | CCATC | 1 cut(s) | 36 |
| BcoDI | GTCTC | 2 cut(s) | 483, 805 |
| BfaI | CTAG | 2 cut(s) | 327, 498 |
| BfmI | CTRYAG | 1 cut(s) | 425 |
| BglII | AGATCT | 1 cut(s) | 196 |
| BisI | GCNGC | 4 cut(s) | 127, 425, 428, 731 |
| BlsI | GCNGC | 4 cut(s) | 128, 426, 429, 732 |
| Bme18I | GGWCC | 1 cut(s) | 841 |
| BmgT120I | GGNCC | 1 cut(s) | 841 |
| BmsI | GCATC | 1 cut(s) | 365 |
| BpiI | GAAGAC | 1 cut(s) | 697 |
| BsaBI | GATNNNNATC | 1 cut(s) | 46 |
| BsaJI | CCNNGG | 1 cut(s) | 636 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 753 |
| Bse1I | ACTGG | 2 cut(s) | 77, 152 |
| Bse8I | GATNNNNATC | 1 cut(s) | 46 |
| BseDI | CCNNGG | 1 cut(s) | 636 |
| BseJI | GATNNNNATC | 1 cut(s) | 46 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 753 |
| BseMII | CTCAG | 1 cut(s) | 135 |
| BseNI | ACTGG | 2 cut(s) | 77, 152 |
| BseRI | GAGGAG | 2 cut(s) | 425, 653 |
| BseXI | GCAGC | 4 cut(s) | 113, 411, 439, 717 |
| BsgI | GTGCAG | 2 cut(s) | 82, 756 |
| BsiHKAI | GWGCWC | 1 cut(s) | 551 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 753 |
| BsmAI | GTCTC | 2 cut(s) | 483, 805 |
| BsmBI | CGTCTC | 1 cut(s) | 805 |
| BsmI | GAATGC | 1 cut(s) | 650 |
| Bsp1286I | GDGCHC | 1 cut(s) | 551 |
| Bsp143I | GATC | 3 cut(s) | 196, 214, 481 |
| BspCNI | CTCAG | 1 cut(s) | 136 |
| BspMAI | CTGCAG | 1 cut(s) | 429 |
| BspPI | GGATC | 1 cut(s) | 476 |
| BspQI | GCTCTTC | 1 cut(s) | 539 |
| BsrI | ACTGG | 2 cut(s) | 77, 152 |
| BssECI | CCNNGG | 1 cut(s) | 636 |
| BssMI | GATC | 3 cut(s) | 196, 214, 481 |
| Bst4CI | ACNGT | 5 cut(s) | 20, 557, 677, 700, 788 |
| Bst6I | CTCTTC | 2 cut(s) | 539, 803 |
| BstC8I | GCNNGC | 1 cut(s) | 735 |
| BstDEI | CTNAG | 2 cut(s) | 144, 686 |
| BstKTI | GATC | 3 cut(s) | 199, 217, 484 |
| BstMAI | GTCTC | 2 cut(s) | 483, 805 |
| BstMBI | GATC | 3 cut(s) | 196, 214, 481 |
| BstNSI | RCATGY | 1 cut(s) | 866 |
| BstSFI | CTRYAG | 1 cut(s) | 425 |
| BstV1I | GCAGC | 4 cut(s) | 113, 411, 439, 717 |
| BstV2I | GAAGAC | 1 cut(s) | 697 |
| BstX2I | RGATCY | 1 cut(s) | 196 |
| BstYI | RGATCY | 1 cut(s) | 196 |
| BtsIMutI | CAGTG | 4 cut(s) | 12, 63, 159, 562 |
| Cac8I | GCNNGC | 1 cut(s) | 735 |
| Cfr13I | GGNCC | 1 cut(s) | 841 |
| Csp6I | GTAC | 1 cut(s) | 835 |
| CviAII | CATG | 1 cut(s) | 863 |
| CviQI | GTAC | 1 cut(s) | 835 |
| DdeI | CTNAG | 2 cut(s) | 144, 686 |
| DpnI | GATC | 3 cut(s) | 198, 216, 483 |
| DpnII | GATC | 3 cut(s) | 196, 214, 481 |
| Eam1104I | CTCTTC | 2 cut(s) | 539, 803 |
| EarI | CTCTTC | 2 cut(s) | 539, 803 |
| Ecl136II | GAGCTC | 1 cut(s) | 549 |
| Eco24I | GRGCYC | 1 cut(s) | 551 |
| Eco47I | GGWCC | 1 cut(s) | 841 |
| Eco53kI | GAGCTC | 1 cut(s) | 549 |
| Eco57I | CTGAAG | 1 cut(s) | 282 |
| EcoICRI | GAGCTC | 1 cut(s) | 549 |
| EcoRI | GAATTC | 1 cut(s) | 298 |
| EcoT38I | GRGCYC | 1 cut(s) | 551 |
| Esp3I | CGTCTC | 1 cut(s) | 805 |
| FaeI | CATG | 1 cut(s) | 866 |
| FaiI | YATR | 7 cut(s) | 31, 161, 237, 536, 588, 743, 864 |
| FatI | CATG | 1 cut(s) | 862 |
| FblI | GTMKAC | 1 cut(s) | 387 |
| Fnu4HI | GCNGC | 4 cut(s) | 127, 425, 428, 731 |
| FriOI | GRGCYC | 1 cut(s) | 551 |
| Fsp4HI | GCNGC | 4 cut(s) | 127, 425, 428, 731 |
| FspBI | CTAG | 2 cut(s) | 327, 498 |
| GluI | GCNGC | 4 cut(s) | 127, 425, 428, 731 |
| Hin1II | CATG | 1 cut(s) | 866 |
| HindIII | AAGCTT | 2 cut(s) | 83, 380 |
| HinfI | GANTC | 4 cut(s) | 257, 471, 824, 878 |
| HphI | GGTGA | 3 cut(s) | 503, 625, 784 |
| Hpy166II | GTNNAC | 2 cut(s) | 388, 868 |
| Hpy188I | TCNGA | 7 cut(s) | 145, 232, 262, 277, 339, 486, 622 |
| Hpy188III | TCNNGA | 1 cut(s) | 218 |
| Hpy8I | GTNNAC | 2 cut(s) | 388, 868 |
| HpyAV | CCTTC | 1 cut(s) | 19 |
| HpyCH4III | ACNGT | 5 cut(s) | 20, 557, 677, 700, 788 |
| HpyF3I | CTNAG | 2 cut(s) | 144, 686 |
| Hsp92II | CATG | 1 cut(s) | 866 |
| Kzo9I | GATC | 3 cut(s) | 196, 214, 481 |
| LguI | GCTCTTC | 1 cut(s) | 539 |
| LpnPI | CCDG | 4 cut(s) | 90, 165, 444, 607 |
| Lsp1109I | GCAGC | 4 cut(s) | 113, 411, 439, 717 |
| LweI | GCATC | 1 cut(s) | 365 |
| MaeI | CTAG | 2 cut(s) | 327, 498 |
| MaeIII | GTNAC | 3 cut(s) | 589, 626, 677 |
| MalI | GATC | 3 cut(s) | 198, 216, 483 |
| MboI | GATC | 3 cut(s) | 196, 214, 481 |
| MboII | GAAGA | 9 cut(s) | 51, 81, 224, 275, 290, 314, 556, 702, 820 |
| MflI | RGATCY | 1 cut(s) | 196 |
| MhlI | GDGCHC | 1 cut(s) | 551 |
| MluCI | AATT | 3 cut(s) | 298, 505, 583 |
| MlyI | GAGTC | 3 cut(s) | 480, 833, 872 |
| MnlI | CCTC | 7 cut(s) | 167, 277, 403, 631, 634, 643, 768 |
| MroXI | GAANNNNTTC | 1 cut(s) | 298 |
| MseI | TTAA | 2 cut(s) | 416, 883 |
| MslI | CAYNNNNRTG | 1 cut(s) | 40 |
| Mva1269I | GAATGC | 1 cut(s) | 650 |
| NdeII | GATC | 3 cut(s) | 196, 214, 481 |
| NlaIII | CATG | 1 cut(s) | 866 |
| NmuCI | GTSAC | 3 cut(s) | 589, 626, 677 |
| NspI | RCATGY | 1 cut(s) | 866 |
| PciSI | GCTCTTC | 1 cut(s) | 539 |
| PctI | GAATGC | 1 cut(s) | 650 |
| PdmI | GAANNNNTTC | 1 cut(s) | 298 |
| PfeI | GAWTC | 1 cut(s) | 257 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 753 |
| PkrI | GCNGC | 4 cut(s) | 128, 426, 429, 732 |
| PleI | GAGTC | 3 cut(s) | 479, 832, 872 |
| PpsI | GAGTC | 3 cut(s) | 479, 832, 872 |
| Psp124BI | GAGCTC | 1 cut(s) | 551 |
| PspPI | GGNCC | 1 cut(s) | 841 |
| PstI | CTGCAG | 1 cut(s) | 429 |
| PsuI | RGATCY | 1 cut(s) | 196 |
| RsaI | GTAC | 1 cut(s) | 836 |
| RsaNI | GTAC | 1 cut(s) | 835 |
| RseI | CAYNNNNRTG | 1 cut(s) | 40 |
| SacI | GAGCTC | 1 cut(s) | 551 |
| SapI | GCTCTTC | 1 cut(s) | 539 |
| SaqAI | TTAA | 2 cut(s) | 416, 883 |
| SatI | GCNGC | 4 cut(s) | 127, 425, 428, 731 |
| Sau3AI | GATC | 3 cut(s) | 196, 214, 481 |
| Sau96I | GGNCC | 1 cut(s) | 841 |
| SchI | GAGTC | 3 cut(s) | 480, 833, 872 |
| SduI | GDGCHC | 1 cut(s) | 551 |
| SfaNI | GCATC | 1 cut(s) | 365 |
| SfcI | CTRYAG | 1 cut(s) | 425 |
| SinI | GGWCC | 1 cut(s) | 841 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 40 |
| Sse9I | AATT | 3 cut(s) | 298, 505, 583 |
| SspI | AATATT | 1 cut(s) | 334 |
| SspMI | CTAG | 2 cut(s) | 327, 498 |
| SstI | GAGCTC | 1 cut(s) | 551 |
| TaaI | ACNGT | 5 cut(s) | 20, 557, 677, 700, 788 |
| TasI | AATT | 3 cut(s) | 298, 505, 583 |
| TatI | WGTACW | 1 cut(s) | 834 |
| TfiI | GAWTC | 1 cut(s) | 257 |
| Tru1I | TTAA | 2 cut(s) | 416, 883 |
| Tru9I | TTAA | 2 cut(s) | 416, 883 |
| TscAI | CASTG | 4 cut(s) | 19, 63, 159, 562 |
| TseFI | GTSAC | 3 cut(s) | 589, 626, 677 |
| TseI | GCWGC | 4 cut(s) | 126, 424, 427, 730 |
| Tsp45I | GTSAC | 3 cut(s) | 589, 626, 677 |
| TspDTI | ATGAA | 3 cut(s) | 252, 311, 434 |
| TspGWI | ACGGA | 1 cut(s) | 829 |
| TspRI | CASTG | 4 cut(s) | 19, 63, 159, 562 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 753 |
| VpaK11BI | GGWCC | 1 cut(s) | 841 |
| XapI | RAATTY | 2 cut(s) | 298, 505 |
| XceI | RCATGY | 1 cut(s) | 866 |
| XmiI | GTMKAC | 1 cut(s) | 387 |
| XmnI | GAANNNNTTC | 1 cut(s) | 298 |
| XspI | CTAG | 2 cut(s) | 327, 498 |