Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009668

Physical Location & Seq

Genomic Coordinates Reverse (-)

48410867 .. 48423359

Gene Structure 12493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG357500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCAGCTATGGAACCAGAGCACGAAGCCCACATCTCCCTCCTCCCCTTCCTGCCAGATCTCCAATCTACTCCCACCGGCCTTGTCTACTTGAAGAAGAGCTTGGTGGAGGAGTTAATGAAGCAGCAGCCTGATTGTTGGGAAAGAAAAGTAGTTGGAAGTTTTGTGAGAGTCAAAACTGACCCAAGAGACTATTTTAGGACAAATTATCACCAACTTGCAGAAGTTCAAGGCATAATTAAGAAGAGCTCAAACAGTGAATATTTCTTGCAAGTGTTATCCAATTATGTGACAAGAGATATTCCAGTTTCTCAGCTTTCGGATTGTGACTTCACCGAGGAGGAATGCAAGGATTTGCAACAAGATGTGGCAAACTGTCACTTGCTAAGAAGACCTACTGTTTTTGAGTTTGAACACAAGGCAAGAGTGCTGCATGAAGATATAACCAAGCATTGGATTAGTAGTGAGTTGGTGAGGTTGCAGAACTGTGTTGATTGGGCAAATGAGAAGGGACGGAGATGCGAGTTATTTGTGTACTTGGACCAAAGAGAATTGCTAAAGCAAGCATGTGAACAAGAGCGAATCTTAAAGCAGGTACCGGAGGTCATTGCAGATTTGCAGAGCCCTACACGTGGACTCTGGAGAAGTCTTGATTTGATTGTTGACTTTGACCGCAAGATTGGTTTGATCATTGTTAATGAGCTTTCAGGCCGCGGTGGTGGGAAGAACAACAGCTCAGTACGGACGTCGGAACTCTACGGAGGGTTAACCAGTGGAAGTCCTTGGGATGATGGAATCTATGATGGCGTCAGAGAAATCACTCTGGTTTATGGCCAGTGCATCGACTCCATAAGTGTGGCATATGATAAAGATGGTCAGTTTGTAAAACCCGGAAAGCATGGAGGTGTCGGGGGCGGTCACCTCCATAAGCCCCTAACTACTGTCGAGGTCAGCTTCAAGTTAAGCTCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plus-3 SWIB

Protein Analysis

324

Amino Acids

36.82

Weight (kDa)

5.74

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plus-3	PF03126	29 - 123	1.2e-11	Plus-3 domain
NERD_plant	PF25980	146 - 194	2.7e-21	Plant NERD domain
Jacalin	PF01419	252 - 309	2.7e-10	Jacalin-like lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009668)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26473 FvH4_6g52630 FvH4_7g09440
malus_domestica	MD15G1414400.v1.1 MD15G1414500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0336751 RchiOBHm_Chr1g0346081
rosa_laevigata	RLG00000028815
rosa_multiflora	Rmu_sc0000907.1_g000013 Rmu_sc0003809.1_g000021 Rmu_ssc0000255.1_g000071
rosa_roxburghii	Rroxscaffold_4G00308830
rosa_rugosa	Rorug01G0177900
rosa_samantha	Rh1AG148800 Rh1AG197400 Rh1BG162700 Rh1CG182400 Rh1DG193300 Rh2CG357500 Rh6BG094500
rosa_wichuraiana	Rw1G016340 Rw1G016570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	749
Acc36I	ACCTGC	1 cut(s)	583
Acc65I	GGTACC	1 cut(s)	595
AccB1I	GGYRCC	1 cut(s)	595
AccB7I	CCANNNNNTGG	1 cut(s)	453
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	1 cut(s)	714
AciI	CCGC	4 cut(s)	673, 712, 714, 915
AcoI	YGGCCR	1 cut(s)	832
AcvI	CACGTG	1 cut(s)	632
AcyI	GRCGYC	2 cut(s)	746, 807
AfaI	GTAC	3 cut(s)	536, 597, 741
AfiI	CCNNNNNNNGG	2 cut(s)	453, 632
AflIII	ACRYGT	1 cut(s)	629
AgsI	TTSAA	4 cut(s)	94, 230, 413, 958
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	8 cut(s)	8, 102, 249, 316, 703, 735, 954, 966
AluI	AGCT	8 cut(s)	8, 102, 249, 316, 703, 735, 954, 966
Alw21I	GWGCWC	2 cut(s)	24, 251
Alw26I	GTCTC	1 cut(s)	183
AoxI	GGCC	3 cut(s)	79, 709, 832
ApeKI	GCWGC	4 cut(s)	5, 124, 127, 430
Asp718I	GGTACC	1 cut(s)	595
AspS9I	GGNCC	1 cut(s)	541
AsuC2I	CCSGG	1 cut(s)	891
AsuHPI	GGTGA	4 cut(s)	203, 325, 484, 911
AvaII	GGWCC	1 cut(s)	541
BalI	TGGCCA	1 cut(s)	834
BanI	GGYRCC	1 cut(s)	595
BanII	GRGCYC	2 cut(s)	251, 626
BbrPI	CACGTG	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	397
Bbv12I	GWGCWC	2 cut(s)	24, 251
BbvI	GCAGC	4 cut(s)	17, 136, 139, 417
BccI	CCATC	3 cut(s)	785, 797, 866
BclI	TGATCA	1 cut(s)	687
BcnI	CCSGG	1 cut(s)	891
BcoDI	GTCTC	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	583
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	5 cut(s)	6, 125, 128, 431, 712
BlsI	GCNGC	5 cut(s)	7, 126, 129, 432, 713
Bme1390I	CCNGG	1 cut(s)	891
Bme18I	GGWCC	1 cut(s)	541
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	2 cut(s)	15, 597
BmrFI	CCNGG	1 cut(s)	891
BmsI	GCATC	2 cut(s)	509, 849
BpiI	GAAGAC	1 cut(s)	397
BpmI	CTGGAG	1 cut(s)	661
BpuMI	CCSGG	1 cut(s)	891
BsaAI	YACGTR	1 cut(s)	632
BsaHI	GRCGYC	2 cut(s)	746, 807
BsaJI	CCNNGG	3 cut(s)	336, 712, 782
BsaWI	WCCGGW	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	2 cut(s)	453, 632
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	3 cut(s)	305, 771, 835
Bse3DI	GCAATG	1 cut(s)	606
BseDI	CCNNGG	3 cut(s)	336, 712, 782
BseGI	GGATG	1 cut(s)	793
BseLI	CCNNNNNNNGG	2 cut(s)	453, 632
BseMI	GCAATG	1 cut(s)	606
BseMII	CTCAG	2 cut(s)	326, 750
BseNI	ACTGG	3 cut(s)	305, 771, 835
BseRI	GAGGAG	3 cut(s)	32, 125, 353
BseXI	GCAGC	4 cut(s)	17, 136, 139, 417
Bsh1236I	CGCG	1 cut(s)	714
BshFI	GGCC	3 cut(s)	81, 711, 834
BshNI	GGYRCC	1 cut(s)	595
BsiHKAI	GWGCWC	2 cut(s)	24, 251
BsiSI	CCGG	3 cut(s)	78, 599, 891
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	2 cut(s)	453, 632
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	525
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	3 cut(s)	81, 711, 834
Bsp1286I	GDGCHC	3 cut(s)	24, 251, 626
Bsp143I	GATC	2 cut(s)	58, 687
BspACI	CCGC	4 cut(s)	673, 712, 714, 915
BspANI	GGCC	3 cut(s)	81, 711, 834
BspCNI	CTCAG	2 cut(s)	325, 749
BspFNI	CGCG	1 cut(s)	714
BspLI	GGNNCC	2 cut(s)	15, 597
BspMI	ACCTGC	1 cut(s)	583
BspQI	GCTCTTC	2 cut(s)	92, 239
BspT107I	GGYRCC	1 cut(s)	595
BsrDI	GCAATG	1 cut(s)	606
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	3 cut(s)	305, 771, 835
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	3 cut(s)	336, 712, 782
BssMI	GATC	2 cut(s)	58, 687
BssNI	GRCGYC	2 cut(s)	746, 807
BssT1I	CCWWGG	1 cut(s)	782
Bst4CI	ACNGT	5 cut(s)	257, 377, 400, 488, 943
Bst6I	CTCTTC	2 cut(s)	92, 239
BstACI	GRCGYC	2 cut(s)	746, 807
BstBAI	YACGTR	1 cut(s)	632
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	3 cut(s)	312, 386, 736
BstDSI	CCRYGG	1 cut(s)	712
BstEII	GGTNACC	1 cut(s)	917
BstF5I	GGATG	1 cut(s)	793
BstFNI	CGCG	1 cut(s)	714
BstKTI	GATC	2 cut(s)	61, 690
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	2 cut(s)	58, 687
BstNSI	RCATGY	1 cut(s)	570
BstPI	GGTNACC	1 cut(s)	917
BstSCI	CCNGG	1 cut(s)	889
BstUI	CGCG	1 cut(s)	714
BstV1I	GCAGC	4 cut(s)	17, 136, 139, 417
BstV2I	GAAGAC	1 cut(s)	397
BstX2I	RGATCY	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	3 cut(s)	81, 711, 834
BtgI	CCRYGG	1 cut(s)	712
BtsCI	GGATG	1 cut(s)	793
BtsIMutI	CAGTG	3 cut(s)	262, 778, 842
BveI	ACCTGC	1 cut(s)	583
Cac8I	GCNNGC	1 cut(s)	564
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	541
Cfr42I	CCGCGG	1 cut(s)	715
CseI	GACGC	1 cut(s)	796
Csp6I	GTAC	3 cut(s)	535, 596, 740
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	3 cut(s)	434, 567, 899
CviQI	GTAC	3 cut(s)	535, 596, 740
DdeI	CTNAG	3 cut(s)	312, 386, 736
DpnI	GATC	2 cut(s)	60, 689
DpnII	GATC	2 cut(s)	58, 687
EaeI	YGGCCR	1 cut(s)	832
Eam1104I	CTCTTC	2 cut(s)	92, 239
EarI	CTCTTC	2 cut(s)	92, 239
Ecl136II	GAGCTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	782
Eco24I	GRGCYC	2 cut(s)	251, 626
Eco47I	GGWCC	1 cut(s)	541
Eco53kI	GAGCTC	1 cut(s)	249
Eco72I	CACGTG	1 cut(s)	632
Eco91I	GGTNACC	1 cut(s)	917
EcoICRI	GAGCTC	1 cut(s)	249
EcoO65I	GGTNACC	1 cut(s)	917
EcoT14I	CCWWGG	1 cut(s)	782
EcoT38I	GRGCYC	2 cut(s)	251, 626
ErhI	CCWWGG	1 cut(s)	782
FaeI	CATG	3 cut(s)	437, 570, 902
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	3 cut(s)	433, 566, 898
FauNDI	CATATG	1 cut(s)	862
FbaI	TGATCA	1 cut(s)	687
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	5 cut(s)	6, 125, 128, 431, 712
FokI	GGATG	1 cut(s)	800
FriOI	GRGCYC	2 cut(s)	251, 626
Fsp4HI	GCNGC	5 cut(s)	6, 125, 128, 431, 712
GluI	GCNGC	5 cut(s)	6, 125, 128, 431, 712
GsuI	CTGGAG	1 cut(s)	661
HaeIII	GGCC	3 cut(s)	81, 711, 834
HapII	CCGG	3 cut(s)	78, 599, 891
HgaI	GACGC	1 cut(s)	796
Hin1I	GRCGYC	2 cut(s)	746, 807
Hin1II	CATG	3 cut(s)	437, 570, 902
HincII	GTYRAC	2 cut(s)	664, 768
HindII	GTYRAC	2 cut(s)	664, 768
HinfI	GANTC	5 cut(s)	171, 582, 636, 795, 845
HpaI	GTTAAC	1 cut(s)	768
HpaII	CCGG	3 cut(s)	78, 599, 891
HphI	GGTGA	4 cut(s)	203, 325, 484, 911
Hpy166II	GTNNAC	6 cut(s)	88, 535, 572, 635, 664, 768
Hpy188I	TCNGA	3 cut(s)	322, 751, 812
Hpy188III	TCNNGA	2 cut(s)	640, 650
Hpy8I	GTNNAC	6 cut(s)	88, 535, 572, 635, 664, 768
Hpy99I	CGWCG	1 cut(s)	751
HpyAV	CCTTC	2 cut(s)	58, 502
HpyCH4III	ACNGT	5 cut(s)	257, 377, 400, 488, 943
HpyCH4IV	ACGT	2 cut(s)	631, 746
HpyCH4V	TGCA	9 cut(s)	221, 271, 348, 358, 433, 481, 611, 619, 840
HpyF3I	CTNAG	3 cut(s)	312, 386, 736
HpySE526I	ACGT	2 cut(s)	631, 746
Hsp92I	GRCGYC	2 cut(s)	746, 807
Hsp92II	CATG	3 cut(s)	437, 570, 902
KpnI	GGTACC	1 cut(s)	599
Ksp22I	TGATCA	1 cut(s)	687
KspAI	GTTAAC	1 cut(s)	768
KspI	CCGCGG	1 cut(s)	715
Kzo9I	GATC	2 cut(s)	58, 687
LguI	GCTCTTC	2 cut(s)	92, 239
Lsp1109I	GCAGC	4 cut(s)	17, 136, 139, 417
LweI	GCATC	2 cut(s)	509, 849
MaeII	ACGT	2 cut(s)	631, 746
MaeIII	GTNAC	4 cut(s)	289, 326, 377, 917
MalI	GATC	2 cut(s)	60, 689
MboI	GATC	2 cut(s)	58, 687
MboII	GAAGA	6 cut(s)	106, 109, 256, 402, 449, 736
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	3 cut(s)	24, 251, 626
MlsI	TGGCCA	1 cut(s)	834
MluCI	AATT	4 cut(s)	205, 237, 283, 551
MluNI	TGGCCA	1 cut(s)	834
MlyI	GAGTC	3 cut(s)	180, 630, 839
MmeI	TCCRAC	2 cut(s)	136, 729
Mox20I	TGGCCA	1 cut(s)	834
MscI	TGGCCA	1 cut(s)	834
MseI	TTAA	6 cut(s)	116, 240, 587, 696, 767, 962
MslI	CAYNNNNRTG	2 cut(s)	854, 903
Msp20I	TGGCCA	1 cut(s)	834
MspA1I	CMGCKG	1 cut(s)	714
MspI	CCGG	3 cut(s)	78, 599, 891
MspR9I	CCNGG	1 cut(s)	891
Mva1269I	GAATGC	1 cut(s)	350
MvnI	CGCG	1 cut(s)	714
NciI	CCSGG	1 cut(s)	891
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	2 cut(s)	58, 687
NlaIII	CATG	3 cut(s)	437, 570, 902
NlaIV	GGNNCC	2 cut(s)	15, 597
NmuCI	GTSAC	4 cut(s)	289, 326, 377, 917
NspI	RCATGY	1 cut(s)	570
PciSI	GCTCTTC	2 cut(s)	92, 239
PctI	GAATGC	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	582, 795
PflMI	CCANNNNNTGG	1 cut(s)	453
PkrI	GCNGC	5 cut(s)	7, 126, 129, 432, 713
PleI	GAGTC	3 cut(s)	179, 630, 839
PmaCI	CACGTG	1 cut(s)	632
PmlI	CACGTG	1 cut(s)	632
PpsI	GAGTC	3 cut(s)	179, 630, 839
Ppu21I	YACGTR	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	251
PspCI	CACGTG	1 cut(s)	632
PspEI	GGTNACC	1 cut(s)	917
PspN4I	GGNNCC	2 cut(s)	15, 597
PspPI	GGNCC	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	3 cut(s)	536, 597, 741
RsaNI	GTAC	3 cut(s)	535, 596, 740
RseI	CAYNNNNRTG	2 cut(s)	854, 903
SacI	GAGCTC	1 cut(s)	251
SacII	CCGCGG	1 cut(s)	715
SapI	GCTCTTC	2 cut(s)	92, 239
SaqAI	TTAA	6 cut(s)	116, 240, 587, 696, 767, 962
SatI	GCNGC	5 cut(s)	6, 125, 128, 431, 712
Sau3AI	GATC	2 cut(s)	58, 687
Sau96I	GGNCC	1 cut(s)	541
SchI	GAGTC	3 cut(s)	180, 630, 839
ScrFI	CCNGG	1 cut(s)	891
SduI	GDGCHC	3 cut(s)	24, 251, 626
SfaNI	GCATC	2 cut(s)	509, 849
Sfr303I	CCGCGG	1 cut(s)	715
SgrBI	CCGCGG	1 cut(s)	715
SinI	GGWCC	1 cut(s)	541
SmiMI	CAYNNNNRTG	2 cut(s)	854, 903
Sse9I	AATT	4 cut(s)	205, 237, 283, 551
SsiI	CCGC	4 cut(s)	673, 712, 714, 915
SspI	AATATT	1 cut(s)	263
SstI	GAGCTC	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	889
StyI	CCWWGG	1 cut(s)	782
TaaI	ACNGT	5 cut(s)	257, 377, 400, 488, 943
TaiI	ACGT	2 cut(s)	634, 749
TaqI	TCGA	2 cut(s)	843, 945
TasI	AATT	4 cut(s)	205, 237, 283, 551
TatI	WGTACW	1 cut(s)	534
TauI	GCSGC	1 cut(s)	714
TfiI	GAWTC	2 cut(s)	582, 795
Tru1I	TTAA	6 cut(s)	116, 240, 587, 696, 767, 962
Tru9I	TTAA	6 cut(s)	116, 240, 587, 696, 767, 962
TscAI	CASTG	3 cut(s)	262, 778, 842
TseFI	GTSAC	4 cut(s)	289, 326, 377, 917
TseI	GCWGC	4 cut(s)	5, 124, 127, 430
Tsp45I	GTSAC	4 cut(s)	289, 326, 377, 917
TspDTI	ATGAA	2 cut(s)	134, 450
TspGWI	ACGGA	3 cut(s)	529, 757, 774
TspRI	CASTG	3 cut(s)	262, 778, 842
Van91I	CCANNNNNTGG	1 cut(s)	453
VpaK11BI	GGWCC	1 cut(s)	541
XceI	RCATGY	1 cut(s)	570
XmiI	GTMKAC	1 cut(s)	87
ZraI	GACGTC	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.