Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009668

Physical Location & Seq

Genomic Coordinates Reverse (-)

9063897 .. 9064877

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTTTGATTACCAGAGCCACCTAAAAGTTAAGCATCCCGGATGTGTTGGGAAGAAGAGACCCTTCACTGAGGACGGAAAGCTATTGATGAACCGAAGTAGGCAATCTTGTTCGGTGTGCGGTACAAGAACCCCAGTAAAGCTTTCTTGCTTCTGCTGTGCGAAAGTGTTGTGTGGAAATTGCCGTGTAAGTAGTGCTTCTGAGTTTGCAATGGTTATAGGAAATAAAAGAGGCATTTGCAAGAGCTGTTTGGATCTTGTTCTGCTTGAAGATCAAGAAAGCTCATCGGAATATGAAAGCGAAAGTGGTGATGATTTGGAAGAAATCACATCGGAAGATGAGGAAAGAATGAGCTCATCAGAAGCGCATACCGGTCTTCCTAGCAATAATTGGAAACAAAGTTATTTTGCATCTTTAGTTGCTGACAACATCAAGCTTGTCTACTTGAAAAAGAGCTTGGTGGAGGAGTTAATGAAGGAGCAGCCTGATTGTTGGGAAAGAAAAGTGGTTGGAAGTTTTGTGAGGATCAAGACTGATCCTGGAGACTATTCTAAGACAAATTTTCACCAACTTGTAGAAGTTCAAGGCATAATTAGGAAGGGCTCAAACAGTGAAGTTTTCTTGCAAGTGTTATCCAATTATGTGCCAAGAGACATTCCTGTTTCTCAGCTTTCAGATTGCAACTTCACCGAGGAGGAATGCGAGGATTTGCGGAAAGAGGTTGCAAACTGTCACTTGCTAAGAAGGCCTACAGTTTTTGAGTTTGAACACAAGGAAAGAGAGCTGCATGAAGATATAACAAAGCATTGGATTAGGAGAGAGTTGATGAGGTTGCAGAACTGTGTCGATTGGGCGAATGAGAAGGGAAGGAGAGCTGAGTTAGATGAGTACTTGGATCAAAGAGAACTGCTGAAGCAAGCATGTGAACAAGAGCGACTCTTGAAACAGGTACCGCAGGTCATCGTAGAGGTTATGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plus-3 SWIB

Protein Analysis

327

Amino Acids

37.6

Weight (kDa)

5.56

Isoelectric Point (pI)

57.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plus-3	PF03126	143 - 241	1.5e-12	Plus-3 domain
NERD_plant	PF25980	264 - 313	9.1e-21	Plant NERD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009668)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26473 FvH4_6g52630 FvH4_7g09440
malus_domestica	MD15G1414400.v1.1 MD15G1414500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0336751 RchiOBHm_Chr1g0346081
rosa_laevigata	RLG00000028815
rosa_multiflora	Rmu_sc0000907.1_g000013 Rmu_sc0003809.1_g000021 Rmu_ssc0000255.1_g000071
rosa_roxburghii	Rroxscaffold_4G00308830
rosa_rugosa	Rorug01G0177900
rosa_samantha	Rh1AG148800 Rh1AG197400 Rh1BG162700 Rh1CG182400 Rh1DG193300 Rh2CG357500 Rh6BG094500
rosa_wichuraiana	Rw1G016340 Rw1G016570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	946
Acc65I	GGTACC	1 cut(s)	949
AccB1I	GGYRCC	1 cut(s)	949
AccI	GTMKAC	1 cut(s)	441
AciI	CCGC	3 cut(s)	120, 712, 953
AclWI	GGATC	4 cut(s)	261, 530, 533, 903
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	932
AfaI	GTAC	3 cut(s)	124, 890, 951
AgeI	ACCGGT	1 cut(s)	371
AgsI	TTSAA	5 cut(s)	269, 448, 584, 767, 943
AjnI	CCWGG	1 cut(s)	538
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
Alw21I	GWGCWC	1 cut(s)	356
Alw26I	GTCTC	3 cut(s)	52, 537, 645
AlwI	GGATC	4 cut(s)	261, 530, 533, 903
AoxI	GGCC	1 cut(s)	746
ApeKI	GCWGC	2 cut(s)	481, 784
ApoI	RAATTY	1 cut(s)	559
AsiGI	ACCGGT	1 cut(s)	371
Asp718I	GGTACC	1 cut(s)	949
AspLEI	GCGC	1 cut(s)	367
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	3 cut(s)	320, 557, 679
BanI	GGYRCC	1 cut(s)	949
BanII	GRGCYC	2 cut(s)	356, 605
BbsI	GAAGAC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	356
BbvI	GCAGC	2 cut(s)	493, 771
BceAI	ACGGC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	540
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	3 cut(s)	52, 537, 645
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	750
BfuAI	ACCTGC	1 cut(s)	946
BisI	GCNGC	2 cut(s)	482, 785
BlsI	GCNGC	2 cut(s)	483, 786
BmcAI	AGTACT	1 cut(s)	890
Bme1390I	CCNGG	2 cut(s)	39, 540
BmiI	GGNNCC	1 cut(s)	951
BmrFI	CCNGG	2 cut(s)	39, 540
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	2 cut(s)	43, 419
BmuI	ACTGGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	561
BpuMI	CCSGG	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	690
BsaWI	WCCGGW	1 cut(s)	371
Bse118I	RCCGGY	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	690
BseGI	GGATG	2 cut(s)	34, 47
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	4 cut(s)	60, 192, 680, 867
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	2 cut(s)	479, 707
BseXI	GCAGC	2 cut(s)	493, 771
BshFI	GGCC	1 cut(s)	748
BshNI	GGYRCC	1 cut(s)	949
BshTI	ACCGGT	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	356
BsiSI	CCGG	2 cut(s)	39, 372
BsmAI	GTCTC	3 cut(s)	52, 537, 645
BsmI	GAATGC	1 cut(s)	704
BsnI	GGCC	1 cut(s)	748
Bso31I	GGTCTC	1 cut(s)	52
Bsp1286I	GDGCHC	2 cut(s)	356, 605
Bsp143I	GATC	5 cut(s)	253, 271, 525, 535, 895
BspACI	CCGC	3 cut(s)	120, 712, 953
BspANI	GGCC	1 cut(s)	748
BspCNI	CTCAG	4 cut(s)	61, 193, 679, 868
BspLI	GGNNCC	1 cut(s)	951
BspMI	ACCTGC	1 cut(s)	946
BspPI	GGATC	4 cut(s)	261, 530, 533, 903
BspT107I	GGYRCC	1 cut(s)	949
BspTNI	GGTCTC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	690
BssMI	GATC	5 cut(s)	253, 271, 525, 535, 895
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	4 cut(s)	611, 731, 754, 842
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	918
BstDEI	CTNAG	6 cut(s)	69, 201, 552, 666, 740, 876
BstF5I	GGATG	2 cut(s)	34, 47
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	5 cut(s)	256, 274, 528, 538, 898
BstMAI	GTCTC	3 cut(s)	52, 537, 645
BstMBI	GATC	5 cut(s)	253, 271, 525, 535, 895
BstMWI	GCNNNNNNNGC	1 cut(s)	745
BstNI	CCWGG	1 cut(s)	540
BstNSI	RCATGY	1 cut(s)	924
BstSCI	CCNGG	2 cut(s)	37, 538
BstSFI	CTRYAG	1 cut(s)	750
BstV1I	GCAGC	2 cut(s)	493, 771
BstV2I	GAAGAC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	748
BtsCI	GGATG	2 cut(s)	34, 47
BtsIMutI	CAGTG	2 cut(s)	66, 616
BveI	ACCTGC	1 cut(s)	946
Cac8I	GCNNGC	1 cut(s)	918
CfoI	GCGC	1 cut(s)	367
Cfr10I	RCCGGY	1 cut(s)	371
Csp6I	GTAC	3 cut(s)	123, 889, 950
CspAI	ACCGGT	1 cut(s)	371
CviAII	CATG	2 cut(s)	788, 921
CviQI	GTAC	3 cut(s)	123, 889, 950
DdeI	CTNAG	6 cut(s)	69, 201, 552, 666, 740, 876
DpnI	GATC	5 cut(s)	255, 273, 527, 537, 897
DpnII	GATC	5 cut(s)	253, 271, 525, 535, 895
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	354
Eco147I	AGGCCT	1 cut(s)	748
Eco24I	GRGCYC	2 cut(s)	356, 605
Eco31I	GGTCTC	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	932
EcoICRI	GAGCTC	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	538
EcoT38I	GRGCYC	2 cut(s)	356, 605
FaeI	CATG	2 cut(s)	791, 924
FaiI	YATR	9 cut(s)	218, 294, 369, 590, 642, 789, 797, 922, 974
FalI	AAGNNNNNCTT	4 cut(s)	47, 79, 181, 213
FatI	CATG	2 cut(s)	787, 920
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	2 cut(s)	482, 785
FokI	GGATG	2 cut(s)	21, 54
FriOI	GRGCYC	2 cut(s)	356, 605
Fsp4HI	GCNGC	2 cut(s)	482, 785
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	2 cut(s)	482, 785
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	1 cut(s)	748
HapII	CCGG	2 cut(s)	39, 372
HhaI	GCGC	1 cut(s)	367
Hin1II	CATG	2 cut(s)	791, 924
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HindIII	AAGCTT	2 cut(s)	140, 434
HinfI	GANTC	1 cut(s)	936
HpaII	CCGG	2 cut(s)	39, 372
HphI	GGTGA	3 cut(s)	320, 557, 679
Hpy166II	GTNNAC	2 cut(s)	442, 926
Hpy188I	TCNGA	5 cut(s)	202, 289, 334, 361, 676
Hpy188III	TCNNGA	3 cut(s)	275, 529, 940
Hpy8I	GTNNAC	2 cut(s)	442, 926
HpyAV	CCTTC	6 cut(s)	73, 469, 592, 738, 856, 861
HpyCH4III	ACNGT	4 cut(s)	611, 731, 754, 842
HpyCH4V	TGCA	8 cut(s)	209, 240, 410, 625, 681, 725, 787, 835
HpyF10VI	GCNNNNNNNGC	1 cut(s)	745
HpyF3I	CTNAG	6 cut(s)	69, 201, 552, 666, 740, 876
Hsp92II	CATG	2 cut(s)	791, 924
HspAI	GCGC	1 cut(s)	365
KpnI	GGTACC	1 cut(s)	953
Kzo9I	GATC	5 cut(s)	253, 271, 525, 535, 895
LmnI	GCTCC	1 cut(s)	478
Lsp1109I	GCAGC	2 cut(s)	493, 771
LweI	GCATC	2 cut(s)	43, 419
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	731
MalI	GATC	5 cut(s)	255, 273, 527, 537, 897
MboI	GATC	5 cut(s)	253, 271, 525, 535, 895
MboII	GAAGA	7 cut(s)	64, 67, 281, 332, 347, 368, 803
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	2 cut(s)	356, 605
MluCI	AATT	5 cut(s)	178, 388, 559, 591, 637
MlyI	GAGTC	1 cut(s)	930
MmeI	TCCRAC	1 cut(s)	490
MseI	TTAA	2 cut(s)	30, 470
MspI	CCGG	2 cut(s)	39, 372
MspR9I	CCNGG	2 cut(s)	39, 540
Mva1269I	GAATGC	1 cut(s)	704
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	1 cut(s)	745
NciI	CCSGG	1 cut(s)	39
NdeII	GATC	5 cut(s)	253, 271, 525, 535, 895
NlaIII	CATG	2 cut(s)	791, 924
NlaIV	GGNNCC	1 cut(s)	951
NmuCI	GTSAC	1 cut(s)	731
NspI	RCATGY	1 cut(s)	924
PceI	AGGCCT	1 cut(s)	748
PctI	GAATGC	1 cut(s)	704
PfoI	TCCNGGA	2 cut(s)	37, 538
PinAI	ACCGGT	1 cut(s)	371
PkrI	GCNGC	2 cut(s)	483, 786
PleI	GAGTC	1 cut(s)	930
PpsI	GAGTC	1 cut(s)	930
Psp124BI	GAGCTC	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	1 cut(s)	951
PsuI	RGATCY	1 cut(s)	253
RsaI	GTAC	3 cut(s)	124, 890, 951
RsaNI	GTAC	3 cut(s)	123, 889, 950
SacI	GAGCTC	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	30, 470
SatI	GCNGC	2 cut(s)	482, 785
Sau3AI	GATC	5 cut(s)	253, 271, 525, 535, 895
ScaI	AGTACT	1 cut(s)	890
SchI	GAGTC	1 cut(s)	930
ScrFI	CCNGG	2 cut(s)	39, 540
SduI	GDGCHC	2 cut(s)	356, 605
SfaNI	GCATC	2 cut(s)	43, 419
SfcI	CTRYAG	1 cut(s)	750
Sse9I	AATT	5 cut(s)	178, 388, 559, 591, 637
SseBI	AGGCCT	1 cut(s)	748
SsiI	CCGC	3 cut(s)	120, 712, 953
SspMI	CTAG	1 cut(s)	381
SstI	GAGCTC	1 cut(s)	356
StuI	AGGCCT	1 cut(s)	748
StyD4I	CCNGG	2 cut(s)	37, 538
TaaI	ACNGT	4 cut(s)	611, 731, 754, 842
TaqI	TCGA	1 cut(s)	846
TasI	AATT	5 cut(s)	178, 388, 559, 591, 637
TatI	WGTACW	1 cut(s)	888
Tru1I	TTAA	2 cut(s)	30, 470
Tru9I	TTAA	2 cut(s)	30, 470
TscAI	CASTG	2 cut(s)	73, 616
TseFI	GTSAC	1 cut(s)	731
TseI	GCWGC	2 cut(s)	481, 784
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	4 cut(s)	104, 309, 488, 804
TspGWI	ACGGA	1 cut(s)	90
TspRI	CASTG	2 cut(s)	73, 616
XapI	RAATTY	1 cut(s)	559
XceI	RCATGY	1 cut(s)	924
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	1 cut(s)	381
ZrmI	AGTACT	1 cut(s)	890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.