MD15G1414500.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0009668
Physical Location & Seq
Reverse (-)
51440292 .. 51441609
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1414500.v1.1.491

Sequence Viewer

Length: 330 bp
ATGAAAGGTGAAATTCTCCTGCAAGTTTCCAATAGAGATATTCCCATTTGTAGGCTGGCAGATTCAGGCTTCACCAAGGACGAAAGTAAGGAGTTGCCGGAAAATGTGGAAAATGGCCTGCTAAGGAAACCTACAGTTGCCGAGCTTGAACAGAAGACAAGACTTCTGCATGAGGATATAACTAAGCATTGGATTGGAAGAGAGTTGGTCAGATTACAGAACTGCATTGATCGAGCAAACGAGAAAGGACGGAGAAAAGAATACCCTTCCATAGTCTATATGCAACTCTTCCGTAGTTCAACTTTCATAGCTTTGAGTGCTTTAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

110

Amino Acids

12.62

Weight (kDa)

8.64

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NERD_plant PF25980 58 - 92 4.1e-19 Plant NERD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 2 cut(s) 149, 300
AluBI AGCT 2 cut(s) 145, 311
AluI AGCT 2 cut(s) 145, 311
AoxI GGCC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 20, 64
BbsI GAAGAC 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 161
Bpu10I CCTNAGC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 51
BshFI GGCC 1 cut(s) 117
BsiSI CCGG 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 51
BsnI GGCC 1 cut(s) 117
Bsp143I GATC 1 cut(s) 229
BspANI GGCC 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 2 cut(s) 193, 293
BstC8I GCNNGC 2 cut(s) 57, 119
BstDEI CTNAG 2 cut(s) 122, 183
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstSFI CTRYAG 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 161
BsuRI GGCC 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 57, 119
CviAII CATG 1 cut(s) 170
CviJI RGCY 5 cut(s) 55, 69, 117, 145, 311
CviKI_1 RGCY 5 cut(s) 55, 69, 117, 145, 311
DdeI CTNAG 2 cut(s) 122, 183
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 193, 293
EarI CTCTTC 2 cut(s) 193, 293
Eco130I CCWWGG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 1 cut(s) 173
FaiI YATR 6 cut(s) 171, 179, 272, 279, 281, 308
FatI CATG 1 cut(s) 169
HaeIII GGCC 1 cut(s) 117
HapII CCGG 1 cut(s) 98
Hin1II CATG 1 cut(s) 173
HinfI GANTC 1 cut(s) 62
HpaII CCGG 1 cut(s) 98
HphI GGTGA 2 cut(s) 20, 64
Hpy188I TCNGA 2 cut(s) 212, 329
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 4 cut(s) 22, 169, 225, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 2 cut(s) 122, 183
Hsp92II CATG 1 cut(s) 173
Kzo9I GATC 1 cut(s) 229
LpnPI CCDG 5 cut(s) 32, 41, 51, 111, 131
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 3 cut(s) 166, 210, 280
MluCI AATT 1 cut(s) 12
MnlI CCTC 1 cut(s) 166
MseI TTAA 1 cut(s) 323
MspI CCGG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 317
NdeII GATC 1 cut(s) 229
NlaIII CATG 1 cut(s) 173
NmeAIII GCCGAG 1 cut(s) 166
PfeI GAWTC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 323
Sau3AI GATC 1 cut(s) 229
SetI ASST 4 cut(s) 10, 133, 147, 313
SfcI CTRYAG 1 cut(s) 132
Sse9I AATT 1 cut(s) 12
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 232
TasI AATT 1 cut(s) 12
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TspDTI ATGAA 2 cut(s) 17, 295
TspGWI ACGGA 2 cut(s) 265, 281
XapI RAATTY 1 cut(s) 12
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.