Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009668

Physical Location & Seq

Genomic Coordinates Reverse (-)

24432199 .. 24432858

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0177900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGACAACCAAATGCCTCGGTTTCCTTTTGGTCATTGTTTTGCTCAACTCCACAATTCTTGGGGAAAGTGCTCGACGTTTTGATATTATAAAGCACCGCAACTTGTGTCGTGGAGCAATCGGGGGTTTCTTTGACGGCTTATGTCTCGGATCGATCAAGGAGTCGGGTCCTAGCCCGGGTCAAGGGAACAAGTTCAATGACAACCAAACCCTTGGAGGAAGAAAGGTTTCCGGCCCTAGCCCTACCAAAGTCACAAATGTTAAGACACTCGAAGGGGTTAAGGATTCCGGCCCAAGCCCTGGTACGGGACACAAATTTACAAATGTTGAGACCCTCGGAGGGATTAAGGATGCTGGCCTCAGCCCTGATACAAGAAACTCATTCACGAATATAGATATTCTTAGAGGGATTAAGGATGGCCCAAGCCCTGGTACAGGAAACTCATTTACAAATGTAGATATTTTAGGAGGAATTAAGGATGGGCCAAGCCCAGGTACAGGAAACAAATTAACAAACAACATACATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plus-3 SWIB

Protein Analysis

176

Amino Acids

18.3

Weight (kDa)

9.44

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009668)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g26473 FvH4_6g52630 FvH4_7g09440
malus_domestica	MD15G1414400.v1.1 MD15G1414500.v1.1
rosa_chinensis	RchiOBHm_Chr1g0336751 RchiOBHm_Chr1g0346081
rosa_laevigata	RLG00000028815
rosa_multiflora	Rmu_sc0000907.1_g000013 Rmu_sc0003809.1_g000021 Rmu_ssc0000255.1_g000071
rosa_roxburghii	Rroxscaffold_4G00308830
rosa_rugosa	Rorug01G0177900
rosa_samantha	Rh1AG148800 Rh1AG197400 Rh1BG162700 Rh1CG182400 Rh1DG193300 Rh2CG357500 Rh6BG094500
rosa_wichuraiana	Rw1G016340 Rw1G016570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AccB7I	CCANNNNNTGG	2 cut(s)	299, 428
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	314
AfaI	GTAC	3 cut(s)	304, 433, 496
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	3 cut(s)	298, 427, 490
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	2 cut(s)	149, 323
AlwI	GGATC	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	5 cut(s)	232, 289, 355, 418, 482
ApoI	RAATTY	1 cut(s)	314
Asp700I	GAANNNNTTC	2 cut(s)	191, 226
AspS9I	GGNCC	5 cut(s)	167, 233, 290, 419, 482
AsuC2I	CCSGG	2 cut(s)	176, 177
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	73
BbvCI	CCTCAGC	1 cut(s)	359
BccI	CCATC	2 cut(s)	410, 473
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	3 cut(s)	300, 429, 492
BcnI	CCSGG	2 cut(s)	176, 177
BcoDI	GTCTC	2 cut(s)	149, 323
BfaI	CTAG	2 cut(s)	171, 237
Bme1390I	CCNGG	5 cut(s)	176, 177, 300, 429, 492
Bme18I	GGWCC	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	5 cut(s)	167, 233, 290, 419, 482
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	5 cut(s)	176, 177, 300, 429, 492
BmsI	GCATC	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	359
BpuMI	CCSGG	2 cut(s)	176, 177
Bsa29I	ATCGAT	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	323
BsaJI	CCNNGG	7 cut(s)	16, 175, 211, 298, 334, 427, 490
BseBI	CCWGG	3 cut(s)	300, 429, 492
BseCI	ATCGAT	1 cut(s)	152
BseDI	CCNNGG	7 cut(s)	16, 175, 211, 298, 334, 427, 490
BseGI	GGATG	3 cut(s)	355, 421, 484
BseMII	CTCAG	1 cut(s)	373
BshFI	GGCC	5 cut(s)	234, 291, 357, 420, 484
BshVI	ATCGAT	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	3 cut(s)	176, 231, 288
BslFI	GGGAC	1 cut(s)	321
BsmAI	GTCTC	2 cut(s)	149, 323
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	5 cut(s)	234, 291, 357, 420, 484
Bso31I	GGTCTC	1 cut(s)	323
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	149, 153
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	5 cut(s)	234, 291, 357, 420, 484
BspCNI	CTCAG	1 cut(s)	372
BspDI	ATCGAT	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	323
BssECI	CCNNGG	7 cut(s)	16, 175, 211, 298, 334, 427, 490
BssMI	GATC	2 cut(s)	149, 153
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	3 cut(s)	300, 429, 492
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	2 cut(s)	359, 401
BstENI	CCTNNNNNAGG	1 cut(s)	432
BstF5I	GGATG	3 cut(s)	355, 421, 484
BstKTI	GATC	2 cut(s)	152, 156
BstMAI	GTCTC	2 cut(s)	149, 323
BstMBI	GATC	2 cut(s)	149, 153
BstNI	CCWGG	3 cut(s)	300, 429, 492
BstSCI	CCNGG	5 cut(s)	174, 175, 298, 427, 490
BstXI	CCANNNNNNTGG	1 cut(s)	212
Bsu15I	ATCGAT	1 cut(s)	152
BsuRI	GGCC	5 cut(s)	234, 291, 357, 420, 484
BsuTUI	ATCGAT	1 cut(s)	152
BtsCI	GGATG	3 cut(s)	355, 421, 484
Cac8I	GCNNGC	1 cut(s)	355
Cfr13I	GGNCC	5 cut(s)	167, 233, 290, 419, 482
Cfr9I	CCCGGG	1 cut(s)	175
ClaI	ATCGAT	1 cut(s)	152
Csp6I	GTAC	3 cut(s)	303, 432, 495
CspCI	CAANNNNNGTGG	2 cut(s)	40, 75
CviQI	GTAC	3 cut(s)	303, 432, 495
DdeI	CTNAG	2 cut(s)	359, 401
DpnI	GATC	2 cut(s)	151, 155
DpnII	GATC	2 cut(s)	149, 153
Eco130I	CCWWGG	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	3 cut(s)	298, 427, 490
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaiI	YATR	4 cut(s)	89, 142, 392, 521
FaqI	GGGAC	1 cut(s)	321
FokI	GGATG	3 cut(s)	362, 428, 491
FspBI	CTAG	2 cut(s)	171, 237
HaeIII	GGCC	5 cut(s)	234, 291, 357, 420, 484
HapII	CCGG	3 cut(s)	176, 231, 288
HinfI	GANTC	2 cut(s)	161, 284
HpaII	CCGG	3 cut(s)	176, 231, 288
Hpy188I	TCNGA	2 cut(s)	149, 338
Hpy188III	TCNNGA	1 cut(s)	385
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	76
HpyF3I	CTNAG	2 cut(s)	359, 401
HpySE526I	ACGT	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	149, 153
LmnI	GCTCC	1 cut(s)	113
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	2 cut(s)	171, 237
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	2 cut(s)	151, 155
MboI	GATC	2 cut(s)	149, 153
MboII	GAAGA	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	4 cut(s)	54, 314, 471, 506
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	7 cut(s)	26, 209, 332, 344, 368, 398, 461
MroXI	GAANNNNTTC	2 cut(s)	191, 226
MseI	TTAA	6 cut(s)	261, 279, 345, 411, 474, 509
MspI	CCGG	3 cut(s)	176, 231, 288
MspR9I	CCNGG	5 cut(s)	176, 177, 300, 429, 492
MvaI	CCWGG	3 cut(s)	300, 429, 492
NciI	CCSGG	2 cut(s)	176, 177
NdeII	GATC	2 cut(s)	149, 153
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	250
PdmI	GAANNNNTTC	2 cut(s)	191, 226
PfeI	GAWTC	1 cut(s)	284
PflMI	CCANNNNNTGG	2 cut(s)	299, 428
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	167
PsiI	TTATAA	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	3 cut(s)	298, 427, 490
PspGI	CCWGG	3 cut(s)	298, 427, 490
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	5 cut(s)	167, 233, 290, 419, 482
PspPPI	RGGWCCY	1 cut(s)	167
RsaI	GTAC	3 cut(s)	304, 433, 496
RsaNI	GTAC	3 cut(s)	303, 432, 495
SaqAI	TTAA	6 cut(s)	261, 279, 345, 411, 474, 509
Sau3AI	GATC	2 cut(s)	149, 153
Sau96I	GGNCC	5 cut(s)	167, 233, 290, 419, 482
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	5 cut(s)	176, 177, 300, 429, 492
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	3 cut(s)	79, 228, 496
SfaNI	GCATC	1 cut(s)	340
SinI	GGWCC	1 cut(s)	167
SmaI	CCCGGG	1 cut(s)	177
Sse9I	AATT	4 cut(s)	54, 314, 471, 506
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	2 cut(s)	171, 237
StyD4I	CCNGG	5 cut(s)	174, 175, 298, 427, 490
StyI	CCWWGG	1 cut(s)	211
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	3 cut(s)	73, 152, 270
TasI	AATT	4 cut(s)	54, 314, 471, 506
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	6 cut(s)	261, 279, 345, 411, 474, 509
Tru9I	TTAA	6 cut(s)	261, 279, 345, 411, 474, 509
TseFI	GTSAC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	250
TspMI	CCCGGG	1 cut(s)	175
Van91I	CCANNNNNTGG	2 cut(s)	299, 428
VpaK11BI	GGWCC	1 cut(s)	167
XagI	CCTNNNNNAGG	1 cut(s)	432
XapI	RAATTY	1 cut(s)	314
XmaI	CCCGGG	1 cut(s)	175
XmnI	GAANNNNTTC	2 cut(s)	191, 226
XspI	CTAG	2 cut(s)	171, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.