FvH4_7g09850

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0009037
Physical Location & Seq
Forward (+)
9386811 .. 9389101
2291 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09850.t1

Sequence Viewer

Length: 2007 bp
ATGGGCATTCACGTCATTGAGTCCAAAGGGACAAACGGTCATAATGATTGTGTTTCACTTTTTGAATTCTTCTCTCTGTGTGTCTGTCTCTCTTCTTCCTTGTCCTCAAAGTCTTCCTTTCTTCTCCATCCCATTTCACACAGAATCCAAAGCTCCTCCTCTCCTCTCTCTCACCTGTTCATCACCAACCCAATGGAGGATCCAATCCCCTACAGCAAACCCCATTCCCCAAATCCAGGGCTGAACATCTCTGCAATTCATTCAAACCCCATTACACAAGGTAAGTCTTACCTGCAGTTTCTCCTTAAAGCTCTCTTCTTTGTGGTTTTGGTCATGGTTCTGCCTCTGTTTCCTTCACAACCTCCTGAGTTTGTCAGCGATACGATACTCGACAAGTTCTGGGAGCTCATTCATCTTCTTTTCATTGGAATTGCTGTGTCTTATGGATTGTTTAGCAGAAGACATGTTGAAATGGGGGTTGAGAATTGCTCAAATGTTGAAAATTTAGAGTCTTATATGCCTAGGATGTTTGATGGGTGTGATAATCCATGTGGGTCTGGTGAGAAGAGAGTTTTTGAGAGTTCGAATTCTCAGAATTTTGTAGGTAATCATAATAGTACTGTTTATTTTGATGCACAATGCAAACCCAGAATGGTAAATTATGGAGATGGTATTGAAAATTCATATGGGTTTAAGAATAAGAATGTTGCTCAAGCTTGGAATTCTCAGTACTTTCAAGGTGAATCTATGGTTTTTGTAGCTCAACCAGATTATGCTGTTGATGAGATTGTGAAACCCAAATCAGCGTTTGATGATGAGCCATTAGGATTGCCTATTCGGAGTTTGAAATCGAGGGTTAAAAACCAGGATAAGAGTGAGTTTGGTACTAGGAGTGAGTCTGGTTTTGGTTCAAATGCTGCATCTAATAGTTTTGACTGGAGTAGGAATAGGAGCTACGGTGATTTGGCTCCTATAAATTTATTAGAGAAATTCAATCAAGCTATGGCATCACCTTCCCCAATTCTTCAGCGTTCGAGTCCTCGAAAGATGGAAAGGGGAAAGAGAGTAGGTAGTGCCACTCGTCCTTCACATTTTAGGCCACTATCAGTTGATGAAGCTCAGTTTGAGTCTCTCAAAACTCGGTCCTTCCGGTCCACATTGTCTTTCTCATCCCAAACCAGCTCCAAATCTTCTTCACCAGAAAAGGAGTACTCTTCTGTTGACTCTATATCTTCTGAGCTACTGAACTCAGAAACAGTTCATTTGGGGAAAAGAAAGAAGAGCTCCCGAGCCTCTTCTCCTTCAGGTCCACCATCAGAACCAACTCCAATGAATGAAAAGGTTTCACATGGTGGATTGCATTCGAGGGGTTATAGTATTGGTTCGTTCTTTAAGGAGGATTTGAAGAAAAGCTCAGAGAATTACTTGAAGAAAGAAATGAATGGGAGTCGGAGTACTGGGGATCAATACGATTCAGGTAAGAAAGAGTTGGGGATAGGGCCCTTCAAATCAGAGAAGAAGCCTGCAGTCCTCACCAAATCTTCATCAAGAGGAAAATCAGTCAGAACAATCAGAGGTAGTAGACTGACCACTCATGACAAGGTTGAAAATAATCAAAAGGTGTTTGATAATGGTGAAGCTGTATTTATGAGAAATGAGAAAATGCAAAATGGAGGGCTTGAAAATCTGTCTGATATGCCGAAGCCAGCTTTTCCCAAGTACCAGAAGAAACAGATGCAAGACTTCTTTGACCATGTCGAAGTGCGTTCTGAAGAAGAGTCGGAAAGTGAGGCAGAAACCTTTGAAGTGAGCTCAGAAGATAGAGTAGAAGCTGCAGCTGCTGCTGCTTTTTGTAACTCTGTCAATGTTGTAGCAGGACCAGACTCTGAGGTTGATAAGAAGGCTAGTGCGTTCATAGCCAAATTTCGAGAGCAGATAAGGCTTCAGAAAGTTGCATCAATTGACAGATCAAGAGGGCTCAGCCTTAGTGAGAATGGCTTTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

669

Amino Acids

74.23

Weight (kDa)

8.53

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 629 - 657 5.5e-11 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 300
AccI GTMKAC 1 cut(s) 1582
AclWI GGATC 3 cut(s) 194, 207, 1470
AcsI RAATTY 9 cut(s) 65, 502, 586, 595, 679, 721, 976, 989, 1922
AcuI CTGAAG 4 cut(s) 1010, 1287, 1791, 1928
AdeI CACNNNGTG 1 cut(s) 1352
AfaI GTAC 6 cut(s) 619, 731, 886, 1211, 1456, 1721
AfiI CCNNNNNNNGG 2 cut(s) 196, 236
AflIII ACRYGT 1 cut(s) 463
AhdI GACNNNNNGTC 1 cut(s) 36
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 2 cut(s) 235, 864
Alw21I GWGCWC 3 cut(s) 408, 1286, 1814
Alw26I GTCTC 2 cut(s) 92, 1134
AlwI GGATC 3 cut(s) 194, 207, 1470
AlwNI CAGNNNCTG 2 cut(s) 1841, 1886
Ama87I CYCGRG 1 cut(s) 1287
AoxI GGCC 2 cut(s) 1097, 1499
ApaI GGGCCC 1 cut(s) 1503
ApeKI GCWGC 6 cut(s) 917, 1832, 1835, 1838, 1841, 1844
ApoI RAATTY 9 cut(s) 65, 502, 586, 595, 679, 721, 976, 989, 1922
Asp700I GAANNNNTTC 1 cut(s) 1257
AspA2I CCTAGG 1 cut(s) 521
AspS9I GGNCC 6 cut(s) 1143, 1152, 1307, 1499, 1500, 1877
AsuHPI GGTGA 9 cut(s) 164, 175, 572, 752, 971, 1002, 1188, 1525, 1646
AsuII TTCGAA 1 cut(s) 584
AvaI CYCGRG 1 cut(s) 1287
AvaII GGWCC 4 cut(s) 1143, 1152, 1307, 1877
AvrII CCTAGG 1 cut(s) 521
BaeGI GKGCMC 1 cut(s) 1503
BamHI GGATCC 1 cut(s) 199
BanII GRGCYC 5 cut(s) 408, 1286, 1503, 1814, 1980
BbsI GAAGAC 2 cut(s) 105, 466
Bbv12I GWGCWC 3 cut(s) 408, 1286, 1814
BbvI GCAGC 6 cut(s) 904, 1819, 1825, 1828, 1831, 1847
BccI CCATC 5 cut(s) 135, 527, 662, 1042, 1321
BciT130I CCWGG 2 cut(s) 237, 866
BcoDI GTCTC 2 cut(s) 92, 1134
BfaI CTAG 3 cut(s) 522, 888, 1905
BfmI CTRYAG 4 cut(s) 211, 293, 1524, 1833
BfuAI ACCTGC 1 cut(s) 300
BisI GCNGC 6 cut(s) 918, 1833, 1836, 1839, 1842, 1845
BlnI CCTAGG 1 cut(s) 521
BlpI GCTNAGC 1 cut(s) 1979
BlsI GCNGC 6 cut(s) 919, 1834, 1837, 1840, 1843, 1846
BmcAI AGTACT 4 cut(s) 619, 731, 1211, 1456
Bme1390I CCNGG 2 cut(s) 237, 866
Bme18I GGWCC 4 cut(s) 1143, 1152, 1307, 1877
BmeRI GACNNNNNGTC 1 cut(s) 36
BmeT110I CYCGRG 1 cut(s) 1287
BmgBI CACGTC 1 cut(s) 13
BmgT120I GGNCC 6 cut(s) 1143, 1152, 1307, 1499, 1500, 1877
BmiI GGNNCC 3 cut(s) 201, 969, 1501
BmrFI CCNGG 2 cut(s) 237, 866
BmrI ACTGGG 1 cut(s) 1467
BmsI GCATC 5 cut(s) 622, 929, 1016, 1725, 1964
BmuI ACTGGG 1 cut(s) 1467
BpiI GAAGAC 2 cut(s) 105, 466
BplI GAGNNNNNCTC 2 cut(s) 473, 505
BpmI CTGGAG 1 cut(s) 958
Bpu1102I GCTNAGC 1 cut(s) 1979
Bpu14I TTCGAA 1 cut(s) 584
BpuEI CTTGAG 1 cut(s) 696
BsaJI CCNNGG 2 cut(s) 236, 521
BsaWI WCCGGW 1 cut(s) 1149
BsaXI ACNNNNNCTCC 4 cut(s) 943, 973, 1438, 1468
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 236
Bse1I ACTGG 2 cut(s) 941, 1462
BseBI CCWGG 2 cut(s) 237, 866
BseDI CCNNGG 2 cut(s) 236, 521
BseGI GGATG 3 cut(s) 127, 531, 1169
BseLI CCNNNNNNNGG 2 cut(s) 196, 236
BseNI ACTGG 2 cut(s) 941, 1462
BseRI GAGGAG 3 cut(s) 145, 148, 153
BseSI GKGCMC 1 cut(s) 1503
BseXI GCAGC 6 cut(s) 904, 1819, 1825, 1828, 1831, 1847
BshFI GGCC 2 cut(s) 1099, 1501
BsiHKAI GWGCWC 3 cut(s) 408, 1286, 1814
BsiHKCI CYCGRG 1 cut(s) 1287
BsiSI CCGG 1 cut(s) 1150
BslFI GGGAC 1 cut(s) 43
BslI CCNNNNNNNGG 2 cut(s) 196, 236
BsmAI GTCTC 2 cut(s) 92, 1134
BsmFI GGGAC 1 cut(s) 43
BsmI GAATGC 2 cut(s) 6, 1360
BsnI GGCC 2 cut(s) 1099, 1501
BsoBI CYCGRG 1 cut(s) 1287
Bsp119I TTCGAA 1 cut(s) 584
Bsp120I GGGCCC 1 cut(s) 1499
Bsp1286I GDGCHC 5 cut(s) 408, 1286, 1503, 1814, 1980
Bsp143I GATC 3 cut(s) 199, 1462, 1967
Bsp1720I GCTNAGC 1 cut(s) 1979
BspANI GGCC 2 cut(s) 1099, 1501
BspHI TCATGA 1 cut(s) 1594
BspLI GGNNCC 3 cut(s) 201, 969, 1501
BspMAI CTGCAG 3 cut(s) 297, 1528, 1837
BspMI ACCTGC 1 cut(s) 300
BspPI GGATC 3 cut(s) 194, 207, 1470
BspQI GCTCTTC 1 cut(s) 1274
BspT104I TTCGAA 1 cut(s) 584
BsrI ACTGG 2 cut(s) 941, 1462
BssECI CCNNGG 2 cut(s) 236, 521
BssMI GATC 3 cut(s) 199, 1462, 1967
BssT1I CCWWGG 1 cut(s) 521
Bst2UI CCWGG 2 cut(s) 237, 866
Bst4CI ACNGT 4 cut(s) 38, 622, 959, 1258
Bst6I CTCTTC 7 cut(s) 97, 320, 560, 1219, 1274, 1300, 1770
BstAPI GCANNNNNTGC 1 cut(s) 1841
BstBI TTCGAA 1 cut(s) 584
BstC8I GCNNGC 2 cut(s) 1524, 1707
BstF5I GGATG 3 cut(s) 127, 531, 1169
BstKTI GATC 3 cut(s) 202, 1465, 1970
BstMAI GTCTC 2 cut(s) 92, 1134
BstMBI GATC 3 cut(s) 199, 1462, 1967
BstMWI GCNNNNNNNGC 5 cut(s) 1838, 1841, 1844, 1916, 1939
BstNI CCWGG 2 cut(s) 237, 866
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 2 cut(s) 235, 864
BstSFI CTRYAG 4 cut(s) 211, 293, 1524, 1833
BstSLI GKGCMC 1 cut(s) 1503
BstV1I GCAGC 6 cut(s) 904, 1819, 1825, 1828, 1831, 1847
BstV2I GAAGAC 2 cut(s) 105, 466
BstX2I RGATCY 1 cut(s) 199
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 2 cut(s) 1099, 1501
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 3 cut(s) 127, 531, 1169
BveI ACCTGC 1 cut(s) 300
Cac8I GCNNGC 2 cut(s) 1524, 1707
CaiI CAGNNNCTG 2 cut(s) 1841, 1886
CciI TCATGA 1 cut(s) 1594
Cfr13I GGNCC 6 cut(s) 1143, 1152, 1307, 1499, 1500, 1877
Csp6I GTAC 6 cut(s) 618, 730, 885, 1210, 1455, 1720
CviAII CATG 6 cut(s) 334, 464, 549, 1349, 1595, 1754
CviQI GTAC 6 cut(s) 618, 730, 885, 1210, 1455, 1720
DpnI GATC 3 cut(s) 201, 1464, 1969
DpnII GATC 3 cut(s) 199, 1462, 1967
DraIII CACNNNGTG 1 cut(s) 1352
DriI GACNNNNNGTC 1 cut(s) 36
Eam1104I CTCTTC 7 cut(s) 97, 320, 560, 1219, 1274, 1300, 1770
Eam1105I GACNNNNNGTC 1 cut(s) 36
EarI CTCTTC 7 cut(s) 97, 320, 560, 1219, 1274, 1300, 1770
Ecl136II GAGCTC 3 cut(s) 406, 1284, 1812
Eco130I CCWWGG 1 cut(s) 521
Eco24I GRGCYC 5 cut(s) 408, 1286, 1503, 1814, 1980
Eco47I GGWCC 4 cut(s) 1143, 1152, 1307, 1877
Eco53kI GAGCTC 3 cut(s) 406, 1284, 1812
Eco57I CTGAAG 4 cut(s) 1010, 1287, 1791, 1928
Eco88I CYCGRG 1 cut(s) 1287
EcoICRI GAGCTC 3 cut(s) 406, 1284, 1812
EcoO109I RGGNCCY 2 cut(s) 1499, 1500
EcoRI GAATTC 3 cut(s) 65, 586, 721
EcoRII CCWGG 2 cut(s) 235, 864
EcoT14I CCWWGG 1 cut(s) 521
EcoT38I GRGCYC 5 cut(s) 408, 1286, 1503, 1814, 1980
ErhI CCWWGG 1 cut(s) 521
FaeI CATG 6 cut(s) 337, 467, 552, 1352, 1598, 1757
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 1 cut(s) 43
FatI CATG 6 cut(s) 333, 463, 548, 1348, 1594, 1753
FauNDI CATATG 1 cut(s) 685
FblI GTMKAC 1 cut(s) 1582
Fnu4HI GCNGC 6 cut(s) 918, 1833, 1836, 1839, 1842, 1845
FokI GGATG 3 cut(s) 114, 538, 1156
FriOI GRGCYC 5 cut(s) 408, 1286, 1503, 1814, 1980
Fsp4HI GCNGC 6 cut(s) 918, 1833, 1836, 1839, 1842, 1845
FspBI CTAG 3 cut(s) 522, 888, 1905
GluI GCNGC 6 cut(s) 918, 1833, 1836, 1839, 1842, 1845
GsuI CTGGAG 1 cut(s) 958
HaeIII GGCC 2 cut(s) 1099, 1501
HapII CCGG 1 cut(s) 1150
Hin1II CATG 6 cut(s) 337, 467, 552, 1352, 1598, 1757
HincII GTYRAC 1 cut(s) 1222
HindII GTYRAC 1 cut(s) 1222
HindIII AAGCTT 1 cut(s) 714
HpaII CCGG 1 cut(s) 1150
HphI GGTGA 9 cut(s) 164, 175, 572, 752, 971, 1002, 1188, 1525, 1646
Hpy166II GTNNAC 4 cut(s) 1155, 1222, 1310, 1583
Hpy188III TCNNGA 6 cut(s) 365, 1287, 1548, 1595, 1928, 1971
Hpy8I GTNNAC 4 cut(s) 1155, 1222, 1310, 1583
HpyAV CCTTC 7 cut(s) 363, 1023, 1095, 1156, 1311, 1513, 1894
HpyCH4III ACNGT 4 cut(s) 38, 622, 959, 1258
HpyCH4IV ACGT 1 cut(s) 12
HpyF10VI GCNNNNNNNGC 5 cut(s) 1838, 1841, 1844, 1916, 1939
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 6 cut(s) 337, 467, 552, 1352, 1598, 1757
Kzo9I GATC 3 cut(s) 199, 1462, 1967
LguI GCTCTTC 1 cut(s) 1274
LmnI GCTCC 6 cut(s) 158, 403, 951, 973, 1187, 1289
Lsp1109I GCAGC 6 cut(s) 904, 1819, 1825, 1828, 1831, 1847
LweI GCATC 5 cut(s) 622, 929, 1016, 1725, 1964
MaeI CTAG 3 cut(s) 522, 888, 1905
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 1853
MalI GATC 3 cut(s) 201, 1464, 1969
MboI GATC 3 cut(s) 199, 1462, 1967
MfeI CAATTG 1 cut(s) 1959
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 5 cut(s) 408, 1286, 1503, 1814, 1980
MlyI GAGTC 9 cut(s) 29, 518, 905, 1045, 1136, 1217, 1456, 1787, 1877
MmeI TCCRAC 2 cut(s) 1430, 1761
MroXI GAANNNNTTC 1 cut(s) 1257
MseI TTAA 4 cut(s) 306, 693, 858, 1392
MspA1I CMGCKG 1 cut(s) 1838
MspI CCGG 1 cut(s) 1150
MspR9I CCNGG 2 cut(s) 237, 866
MunI CAATTG 1 cut(s) 1959
Mva1269I GAATGC 2 cut(s) 6, 1360
MvaI CCWGG 2 cut(s) 237, 866
MwoI GCNNNNNNNGC 5 cut(s) 1838, 1841, 1844, 1916, 1939
NdeI CATATG 1 cut(s) 685
NdeII GATC 3 cut(s) 199, 1462, 1967
NlaIII CATG 6 cut(s) 337, 467, 552, 1352, 1598, 1757
NlaIV GGNNCC 3 cut(s) 201, 969, 1501
NspI RCATGY 1 cut(s) 467
NspV TTCGAA 1 cut(s) 584
PagI TCATGA 1 cut(s) 1594
PciI ACATGT 1 cut(s) 463
PciSI GCTCTTC 1 cut(s) 1274
PctI GAATGC 2 cut(s) 6, 1360
PdmI GAANNNNTTC 1 cut(s) 1257
PfeI GAWTC 3 cut(s) 144, 743, 1472
PflFI GACNNNGTC 1 cut(s) 1754
PkrI GCNGC 6 cut(s) 919, 1834, 1837, 1840, 1843, 1846
PleI GAGTC 9 cut(s) 28, 517, 904, 1044, 1135, 1217, 1455, 1786, 1877
PpsI GAGTC 9 cut(s) 28, 517, 904, 1044, 1135, 1217, 1455, 1786, 1877
PscI ACATGT 1 cut(s) 463
Psp124BI GAGCTC 3 cut(s) 408, 1286, 1814
Psp6I CCWGG 2 cut(s) 235, 864
PspGI CCWGG 2 cut(s) 235, 864
PspN4I GGNNCC 3 cut(s) 201, 969, 1501
PspOMI GGGCCC 1 cut(s) 1499
PspPI GGNCC 6 cut(s) 1143, 1152, 1307, 1499, 1500, 1877
PstI CTGCAG 3 cut(s) 297, 1528, 1837
PstNI CAGNNNCTG 2 cut(s) 1841, 1886
PsuI RGATCY 1 cut(s) 199
PsyI GACNNNGTC 1 cut(s) 1754
PvuII CAGCTG 1 cut(s) 1838
RsaI GTAC 6 cut(s) 619, 731, 886, 1211, 1456, 1721
RsaNI GTAC 6 cut(s) 618, 730, 885, 1210, 1455, 1720
SacI GAGCTC 3 cut(s) 408, 1286, 1814
SapI GCTCTTC 1 cut(s) 1274
SaqAI TTAA 4 cut(s) 306, 693, 858, 1392
SatI GCNGC 6 cut(s) 918, 1833, 1836, 1839, 1842, 1845
Sau3AI GATC 3 cut(s) 199, 1462, 1967
Sau96I GGNCC 6 cut(s) 1143, 1152, 1307, 1499, 1500, 1877
ScaI AGTACT 4 cut(s) 619, 731, 1211, 1456
SchI GAGTC 9 cut(s) 29, 518, 905, 1045, 1136, 1217, 1456, 1787, 1877
ScrFI CCNGG 2 cut(s) 237, 866
SduI GDGCHC 5 cut(s) 408, 1286, 1503, 1814, 1980
SfaNI GCATC 5 cut(s) 622, 929, 1016, 1725, 1964
SfcI CTRYAG 4 cut(s) 211, 293, 1524, 1833
SfuI TTCGAA 1 cut(s) 584
SinI GGWCC 4 cut(s) 1143, 1152, 1307, 1877
SmlI CTYRAG 1 cut(s) 711
SmoI CTYRAG 1 cut(s) 711
SspMI CTAG 3 cut(s) 522, 888, 1905
SstI GAGCTC 3 cut(s) 408, 1286, 1814
StyD4I CCNGG 2 cut(s) 235, 864
StyI CCWWGG 1 cut(s) 521
TaaI ACNGT 4 cut(s) 38, 622, 959, 1258
TaiI ACGT 1 cut(s) 15
TaqI TCGA 8 cut(s) 390, 584, 851, 1034, 1042, 1364, 1758, 1927
TaqII GACCGA 1 cut(s) 1131
TatI WGTACW 4 cut(s) 617, 729, 1209, 1454
TfiI GAWTC 3 cut(s) 144, 743, 1472
Tru1I TTAA 4 cut(s) 306, 693, 858, 1392
Tru9I TTAA 4 cut(s) 306, 693, 858, 1392
TseI GCWGC 6 cut(s) 917, 1832, 1835, 1838, 1841, 1844
Tth111I GACNNNGTC 1 cut(s) 1754
VpaK11BI GGWCC 4 cut(s) 1143, 1152, 1307, 1877
XapI RAATTY 9 cut(s) 65, 502, 586, 595, 679, 721, 976, 989, 1922
XceI RCATGY 1 cut(s) 467
XmaJI CCTAGG 1 cut(s) 521
XmiI GTMKAC 1 cut(s) 1582
XmnI GAANNNNTTC 1 cut(s) 1257
XspI CTAG 3 cut(s) 522, 888, 1905
ZrmI AGTACT 4 cut(s) 619, 731, 1211, 1456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.