pycom07g08900

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0009037
Physical Location & Seq
Forward (+)
8107707 .. 8108150
444 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g08900.1

Sequence Viewer

Length: 444 bp
ATGTGTGACATTGGTGAGTTTATATCTATGAGAAAAGATATGATGCAAAATGGAGTAACCAACACGAAAAATGTTGGAAATGGAAAGAGTAAGCATGATCTTGGCAATCCTTTTCACATGCCAAAGCTAGAATTTCCGAAACGTGAGAAGGAGATGCGAGAAGTTCATGGCAATGCAGCTGCGGAGTTTGAAGAAGAAGAGTTGGAAAGTGAGGCAGAAAACTTTCAATTGAGCTCGGATGATGAACGTGAAGATGATGCTCTTGCCACTGCTGCTGCGGCTACAAGTAGCAACTCTCTGAATGTTGGAGGAGCAGACTCAGAGGTTGATAAGAAGGCGGGCGAGTTCATAGCGAAATTTAGAGAGCAGATTAGGCGTCAAAAAGTGGCATCAATGGACAGATCAAGAGGGCAACACATATCTGCTAATTCCTTTGGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

148

Amino Acids

16.35

Weight (kDa)

5.18

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 107 - 135 4.5e-10 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 182, 278, 338
AcsI RAATTY 2 cut(s) 131, 356
AcyI GRCGYC 1 cut(s) 376
AgsI TTSAA 2 cut(s) 191, 227
AluBI AGCT 3 cut(s) 127, 179, 234
AluI AGCT 3 cut(s) 127, 179, 234
Alw21I GWGCWC 1 cut(s) 236
ApeKI GCWGC 4 cut(s) 176, 179, 272, 275
ApoI RAATTY 2 cut(s) 131, 356
Asp700I GAANNNNTTC 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 26
BanII GRGCYC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 236
BbvI GCAGC 4 cut(s) 166, 188, 259, 262
BfaI CTAG 1 cut(s) 128
BisI GCNGC 5 cut(s) 177, 180, 273, 276, 279
BlsI GCNGC 5 cut(s) 178, 181, 274, 277, 280
BmsI GCATC 4 cut(s) 33, 144, 247, 398
BsaHI GRCGYC 1 cut(s) 376
Bse3DI GCAATG 1 cut(s) 178
BseGI GGATG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 333
BseRI GAGGAG 1 cut(s) 324
BseXI GCAGC 4 cut(s) 166, 188, 259, 262
BsiHKAI GWGCWC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 2 cut(s) 97, 401
BspACI CCGC 3 cut(s) 182, 278, 338
BspCNI CTCAG 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 178
BssMI GATC 2 cut(s) 97, 401
BssNI GRCGYC 1 cut(s) 376
Bst6I CTCTTC 1 cut(s) 192
BstACI GRCGYC 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 1 cut(s) 319
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 2 cut(s) 100, 404
BstMBI GATC 2 cut(s) 97, 401
BstMWI GCNNNNNNNGC 3 cut(s) 272, 278, 373
BstNSI RCATGY 1 cut(s) 121
BstV1I GCAGC 4 cut(s) 166, 188, 259, 262
BtsCI GGATG 1 cut(s) 244
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 340
CseI GACGC 1 cut(s) 365
CviAII CATG 3 cut(s) 95, 118, 167
CviJI RGCY 4 cut(s) 127, 179, 234, 281
CviKI_1 RGCY 4 cut(s) 127, 179, 234, 281
DdeI CTNAG 1 cut(s) 319
DpnI GATC 2 cut(s) 99, 403
DpnII GATC 2 cut(s) 97, 401
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Ecl136II GAGCTC 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 236
Eco53kI GAGCTC 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 236
FaeI CATG 3 cut(s) 98, 121, 170
FaiI YATR 8 cut(s) 23, 29, 41, 96, 119, 168, 350, 419
FatI CATG 3 cut(s) 94, 117, 166
FauI CCCGC 1 cut(s) 331
Fnu4HI GCNGC 5 cut(s) 177, 180, 273, 276, 279
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 236
Fsp4HI GCNGC 5 cut(s) 177, 180, 273, 276, 279
FspBI CTAG 1 cut(s) 128
GluI GCNGC 5 cut(s) 177, 180, 273, 276, 279
HgaI GACGC 1 cut(s) 365
Hin1I GRCGYC 1 cut(s) 376
Hin1II CATG 3 cut(s) 98, 121, 170
HinfI GANTC 1 cut(s) 317
HphI GGTGA 1 cut(s) 26
Hpy188I TCNGA 4 cut(s) 138, 238, 300, 322
Hpy188III TCNNGA 1 cut(s) 405
HpyAV CCTTC 2 cut(s) 142, 328
HpyCH4IV ACGT 2 cut(s) 142, 247
HpyCH4V TGCA 2 cut(s) 46, 176
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 278, 373
HpyF3I CTNAG 1 cut(s) 319
HpySE526I ACGT 2 cut(s) 142, 247
Hsp92I GRCGYC 1 cut(s) 376
Hsp92II CATG 3 cut(s) 98, 121, 170
Kzo9I GATC 2 cut(s) 97, 401
LmnI GCTCC 1 cut(s) 311
Lsp1109I GCAGC 4 cut(s) 166, 188, 259, 262
LweI GCATC 4 cut(s) 33, 144, 247, 398
MaeI CTAG 1 cut(s) 128
MaeII ACGT 2 cut(s) 142, 247
MaeIII GTNAC 2 cut(s) 5, 55
MalI GATC 2 cut(s) 99, 403
MboI GATC 2 cut(s) 97, 401
MboII GAAGA 4 cut(s) 203, 206, 209, 263
MfeI CAATTG 1 cut(s) 227
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 4 cut(s) 131, 227, 356, 427
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 3 cut(s) 55, 183, 286
MnlI CCTC 4 cut(s) 205, 302, 316, 401
MroXI GAANNNNTTC 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 179
MunI CAATTG 1 cut(s) 227
MwoI GCNNNNNNNGC 3 cut(s) 272, 278, 373
NdeII GATC 2 cut(s) 97, 401
NlaIII CATG 3 cut(s) 98, 121, 170
NmuCI GTSAC 1 cut(s) 5
NspI RCATGY 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 222
PkrI GCNGC 5 cut(s) 178, 181, 274, 277, 280
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
Psp124BI GAGCTC 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 171
SacI GAGCTC 1 cut(s) 236
SatI GCNGC 5 cut(s) 177, 180, 273, 276, 279
Sau3AI GATC 2 cut(s) 97, 401
SchI GAGTC 1 cut(s) 311
SduI GDGCHC 1 cut(s) 236
SetI ASST 6 cut(s) 129, 145, 181, 236, 250, 327
SfaNI GCATC 4 cut(s) 33, 144, 247, 398
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 4 cut(s) 131, 227, 356, 427
SsiI CCGC 3 cut(s) 182, 278, 338
SspMI CTAG 1 cut(s) 128
SstI GAGCTC 1 cut(s) 236
TaiI ACGT 2 cut(s) 145, 250
TasI AATT 4 cut(s) 131, 227, 356, 427
TauI GCSGC 1 cut(s) 281
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 4 cut(s) 176, 179, 272, 275
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 3 cut(s) 155, 258, 337
TspRI CASTG 1 cut(s) 274
XapI RAATTY 2 cut(s) 131, 356
XceI RCATGY 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.