Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002705.1

Orthogroup ID

OG0009037

Physical Location & Seq

Genomic Coordinates Forward (+)

168318 .. 169676

Gene Structure 1359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002705.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

atggaggatgcagcccctttcagaaaaccccatttcccaaatccagggatgaacaactcatcagcagttcagtttcaacagaaccccattacacaaggtaagtcttacctgcaatttctgtttaaaggtatcttctttgtggttttggtcgtggctctgcccttgtttccttcacaagctcctgaatttatcaaccatacgatactcgacaagttctgggagcttattcatcttcttttcattggaattgctgtgtcttatggcttgtttagcagaagaaatgttgagatggggattgaaaaccagtcaaatgttgaaaatgtagagtcttatatgcctaggatgtttgatgggtatgaaaatccatgtgggtctggtgagaagaaagttcttgagagttggagttctcagaattttgtaggtaaccataaaagtactgtttattttgatgcccaatgcaaacccagattgccaaattgtggagatggtcttgaaaattcttgtggttttaaaaataagaatgctactcaagcttggaattctcagtactttcagggtgaatctatggtttttgtagctcaaccagattatgttgttgatgagtttgtgaaacccaaatcagtagttgatgatgagccattaggattgcctgttcggagtttgaaatcgagggttaaaaaccaggagaagcctgagtttgttactgggagtgagcctggttttggttcaaaggctgcatctaatagttttgactggagtaggaataggagctttggtgatttggctcctataaatttactagagaaattcaatcaagctatggcatcaccttccccagttcttcagcgttcgagttctcgaaagatggaaaggggaaaaagagtaggtagtgcccctcgtccttcacattttaggccactatcagttgatgaagctcaatttgagtcgctaaaaactcggtccttccggtccacattgtctttctcatccgaaactagctccaaatcttcttcacctgaaaaggagtactcttctgttaactctacaacttctgaggtaccaaactcggaaacggttcatttggggaaaagaaagaagagctcccgagcgtcttctccttcaggtttaccatcagaaccaaatccaatgcttgaaaaagttccaatgggtggattgcattcgaggggctatagtgtaggttctttctttgaggacgatttgaggaaaagctcagagaatcacttgaagaaagaattgaatgggagtcgaattactggagatcaatatgattcaggtaagaaagagttggggacagggtctttcggatcagagaagaagcctgcaagcctcagcaaatct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

453

Amino Acids

50.28

Weight (kDa)

9.0

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60380
fragaria_vesca	FvH4_7g09850
malus_domestica	MD02G1216600.v1.1 MD07G1103700.v1.1
prunus_persica	Prupe.2G127500_v2.0.a1
pyrus_communis	pycom02g17820 pycom02g17830 pycom07g08460 pycom07g08740 pycom07g08880 pycom07g08900
rosa_chinensis	RchiOBHm_Chr1g0347391
rosa_laevigata	RLG00000028754
rosa_multiflora	Rmu_co8226457.1_g000001 Rmu_sc0002705.1_g000039
rosa_roxburghii	Rroxscaffold_4G00307860
rosa_rugosa	Rorug01G0186300
rosa_samantha	Rh1AG204000 Rh1BG169700 Rh1CG189100 Rh1DG200100
rosa_wichuraiana	Rw1G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	117
Acc65I	GGTACC	1 cut(s)	1057
AccB1I	GGYRCC	1 cut(s)	1057
AccB7I	CCANNNNNTGG	2 cut(s)	479, 1169
AclWI	GGATC	1 cut(s)	1333
AcsI	RAATTY	6 cut(s)	185, 412, 496, 538, 793, 806
AcuI	CTGAAG	2 cut(s)	827, 1104
AfaI	GTAC	4 cut(s)	436, 548, 1028, 1059
AfiI	CCNNNNNNNGG	4 cut(s)	44, 479, 722, 1169
AjnI	CCWGG	3 cut(s)	43, 681, 715
AloI	GAACNNNNNNTCC	2 cut(s)	636, 668
Alw21I	GWGCWC	1 cut(s)	1103
AlwI	GGATC	1 cut(s)	1333
Ama87I	CYCGRG	1 cut(s)	1104
AoxI	GGCC	1 cut(s)	914
ApeKI	GCWGC	2 cut(s)	11, 734
ApoI	RAATTY	6 cut(s)	185, 412, 496, 538, 793, 806
Asp700I	GAANNNNTTC	2 cut(s)	1074, 1158
Asp718I	GGTACC	1 cut(s)	1057
AspA2I	CCTAGG	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	960, 969
AsuHPI	GGTGA	5 cut(s)	389, 569, 788, 819, 1005
AvaI	CYCGRG	1 cut(s)	1104
AvaII	GGWCC	2 cut(s)	960, 969
AvrII	CCTAGG	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	895
BanI	GGYRCC	1 cut(s)	1057
BanII	GRGCYC	1 cut(s)	1103
BbsI	GAAGAC	1 cut(s)	1104
Bbv12I	GWGCWC	1 cut(s)	1103
BbvCI	CCTCAGC	1 cut(s)	1349
BbvI	GCAGC	2 cut(s)	23, 721
BccI	CCATC	5 cut(s)	283, 344, 479, 859, 1138
BciT130I	CCWGG	3 cut(s)	45, 683, 717
BfaI	CTAG	3 cut(s)	339, 800, 996
BfmI	CTRYAG	1 cut(s)	1189
BfuAI	ACCTGC	1 cut(s)	117
BisI	GCNGC	2 cut(s)	12, 735
BlnI	CCTAGG	1 cut(s)	338
BlsI	GCNGC	2 cut(s)	13, 736
BmcAI	AGTACT	3 cut(s)	436, 548, 1028
Bme1390I	CCNGG	3 cut(s)	45, 683, 717
Bme18I	GGWCC	2 cut(s)	960, 969
BmeT110I	CYCGRG	1 cut(s)	1104
BmgT120I	GGNCC	2 cut(s)	960, 969
BmiI	GGNNCC	2 cut(s)	786, 1059
BmrFI	CCNGG	3 cut(s)	45, 683, 717
BmrI	ACTGGG	2 cut(s)	714, 830
BmsI	GCATC	3 cut(s)	439, 746, 833
BmuI	ACTGGG	2 cut(s)	714, 830
BpiI	GAAGAC	1 cut(s)	1104
BpmI	CTGGAG	2 cut(s)	775, 1296
Bpu10I	CCTNAGC	1 cut(s)	1349
BpuEI	CTTGAG	2 cut(s)	413, 513
BsaJI	CCNNGG	2 cut(s)	44, 338
BsaWI	WCCGGW	1 cut(s)	966
BsaXI	ACNNNNNCTCC	2 cut(s)	760, 790
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 479, 722, 1169
Bse1I	ACTGG	5 cut(s)	304, 709, 758, 836, 1279
BseBI	CCWGG	3 cut(s)	45, 683, 717
BseDI	CCNNGG	2 cut(s)	44, 338
BseGI	GGATG	4 cut(s)	13, 54, 348, 986
BseLI	CCNNNNNNNGG	4 cut(s)	44, 479, 722, 1169
BseMII	CTCAG	5 cut(s)	422, 557, 684, 1044, 1245
BseNI	ACTGG	5 cut(s)	304, 709, 758, 836, 1279
BseSI	GKGCMC	1 cut(s)	895
BseXI	GCAGC	2 cut(s)	23, 721
BshFI	GGCC	1 cut(s)	916
BshNI	GGYRCC	1 cut(s)	1057
BsiHKAI	GWGCWC	1 cut(s)	1103
BsiHKCI	CYCGRG	1 cut(s)	1104
BsiSI	CCGG	1 cut(s)	967
BslFI	GGGAC	1 cut(s)	1324
BslI	CCNNNNNNNGG	4 cut(s)	44, 479, 722, 1169
BsmFI	GGGAC	1 cut(s)	1324
BsmI	GAATGC	2 cut(s)	526, 1177
BsnI	GGCC	1 cut(s)	916
BsoBI	CYCGRG	1 cut(s)	1104
Bsp1286I	GDGCHC	2 cut(s)	895, 1103
Bsp143I	GATC	2 cut(s)	1279, 1325
BspANI	GGCC	1 cut(s)	916
BspCNI	CTCAG	5 cut(s)	421, 556, 685, 1045, 1244
BspLI	GGNNCC	2 cut(s)	786, 1059
BspMI	ACCTGC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	1333
BspQI	GCTCTTC	1 cut(s)	1091
BspT107I	GGYRCC	1 cut(s)	1057
BsrI	ACTGG	5 cut(s)	304, 709, 758, 836, 1279
BssECI	CCNNGG	2 cut(s)	44, 338
BssMI	GATC	2 cut(s)	1279, 1325
BssT1I	CCWWGG	1 cut(s)	338
Bst2UI	CCWGG	3 cut(s)	45, 683, 717
Bst4CI	ACNGT	2 cut(s)	439, 1075
Bst6I	CTCTTC	2 cut(s)	1036, 1091
BstC8I	GCNNGC	2 cut(s)	1341, 1345
BstDEI	CTNAG	6 cut(s)	408, 543, 693, 1053, 1231, 1349
BstEII	GGTNACC	1 cut(s)	422
BstF5I	GGATG	4 cut(s)	13, 54, 348, 986
BstKTI	GATC	2 cut(s)	1282, 1328
BstMBI	GATC	2 cut(s)	1279, 1325
BstMWI	GCNNNNNNNGC	2 cut(s)	270, 530
BstNI	CCWGG	3 cut(s)	45, 683, 717
BstPI	GGTNACC	1 cut(s)	422
BstSCI	CCNGG	3 cut(s)	43, 681, 715
BstSFI	CTRYAG	1 cut(s)	1189
BstSLI	GKGCMC	1 cut(s)	895
BstV1I	GCAGC	2 cut(s)	23, 721
BstV2I	GAAGAC	1 cut(s)	1104
BsuRI	GGCC	1 cut(s)	916
BtsCI	GGATG	4 cut(s)	13, 54, 348, 986
BveI	ACCTGC	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	1341, 1345
Cfr13I	GGNCC	2 cut(s)	960, 969
CseI	GACGC	1 cut(s)	1098
Csp6I	GTAC	4 cut(s)	435, 547, 1027, 1058
CviAII	CATG	1 cut(s)	366
CviQI	GTAC	4 cut(s)	435, 547, 1027, 1058
DdeI	CTNAG	6 cut(s)	408, 543, 693, 1053, 1231, 1349
DpnI	GATC	2 cut(s)	1281, 1327
DpnII	GATC	2 cut(s)	1279, 1325
DraI	TTTAAA	2 cut(s)	124, 511
Eam1104I	CTCTTC	2 cut(s)	1036, 1091
EarI	CTCTTC	2 cut(s)	1036, 1091
Ecl136II	GAGCTC	1 cut(s)	1101
Eco130I	CCWWGG	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	1103
Eco47I	GGWCC	2 cut(s)	960, 969
Eco53kI	GAGCTC	1 cut(s)	1101
Eco57I	CTGAAG	2 cut(s)	827, 1104
Eco88I	CYCGRG	1 cut(s)	1104
Eco91I	GGTNACC	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	1101
EcoO65I	GGTNACC	1 cut(s)	422
EcoRI	GAATTC	1 cut(s)	538
EcoRII	CCWGG	3 cut(s)	43, 681, 715
EcoT14I	CCWWGG	1 cut(s)	338
EcoT38I	GRGCYC	1 cut(s)	1103
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	1 cut(s)	369
FaqI	GGGAC	1 cut(s)	1324
FatI	CATG	1 cut(s)	365
Fnu4HI	GCNGC	2 cut(s)	12, 735
FokI	GGATG	4 cut(s)	20, 61, 355, 973
FriOI	GRGCYC	1 cut(s)	1103
Fsp4HI	GCNGC	2 cut(s)	12, 735
FspBI	CTAG	3 cut(s)	339, 800, 996
GluI	GCNGC	2 cut(s)	12, 735
GsuI	CTGGAG	2 cut(s)	775, 1296
HaeIII	GGCC	1 cut(s)	916
HapII	CCGG	1 cut(s)	967
HgaI	GACGC	1 cut(s)	1098
Hin1II	CATG	1 cut(s)	369
HincII	GTYRAC	1 cut(s)	1039
HindII	GTYRAC	1 cut(s)	1039
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	6 cut(s)	326, 560, 944, 1237, 1264, 1289
HpaI	GTTAAC	1 cut(s)	1039
HpaII	CCGG	1 cut(s)	967
HphI	GGTGA	5 cut(s)	389, 569, 788, 819, 1005
Hpy166II	GTNNAC	3 cut(s)	972, 1039, 1127
Hpy188III	TCNNGA	5 cut(s)	182, 392, 491, 858, 1104
Hpy8I	GTNNAC	3 cut(s)	972, 1039, 1127
HpyAV	CCTTC	5 cut(s)	180, 840, 912, 973, 1128
HpyCH4III	ACNGT	2 cut(s)	439, 1075
HpyCH4V	TGCA	6 cut(s)	11, 112, 459, 737, 1177, 1343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	270, 530
HpyF3I	CTNAG	6 cut(s)	408, 543, 693, 1053, 1231, 1349
Hsp92II	CATG	1 cut(s)	369
KpnI	GGTACC	1 cut(s)	1061
KspAI	GTTAAC	1 cut(s)	1039
Kzo9I	GATC	2 cut(s)	1279, 1325
LguI	GCTCTTC	1 cut(s)	1091
LmnI	GCTCC	6 cut(s)	184, 220, 768, 790, 1004, 1106
Lsp1109I	GCAGC	2 cut(s)	23, 721
LweI	GCATC	3 cut(s)	439, 746, 833
MaeI	CTAG	3 cut(s)	339, 800, 996
MaeIII	GTNAC	2 cut(s)	422, 700
MalI	GATC	2 cut(s)	1281, 1327
MboI	GATC	2 cut(s)	1279, 1325
MhlI	GDGCHC	2 cut(s)	895, 1103
MlyI	GAGTC	3 cut(s)	335, 953, 1273
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	7 cut(s)	663, 906, 1048, 1176, 1204, 1215, 1358
MroXI	GAANNNNTTC	2 cut(s)	1074, 1158
MseI	TTAA	4 cut(s)	123, 510, 675, 1038
MspI	CCGG	1 cut(s)	967
MspR9I	CCNGG	3 cut(s)	45, 683, 717
Mva1269I	GAATGC	2 cut(s)	526, 1177
MvaI	CCWGG	3 cut(s)	45, 683, 717
MwoI	GCNNNNNNNGC	2 cut(s)	270, 530
NdeII	GATC	2 cut(s)	1279, 1325
NlaIII	CATG	1 cut(s)	369
NlaIV	GGNNCC	2 cut(s)	786, 1059
PciSI	GCTCTTC	1 cut(s)	1091
PctI	GAATGC	2 cut(s)	526, 1177
PdmI	GAANNNNTTC	2 cut(s)	1074, 1158
PfeI	GAWTC	3 cut(s)	560, 1237, 1289
PflFI	GACNNNGTC	1 cut(s)	1315
PflMI	CCANNNNNTGG	2 cut(s)	479, 1169
PkrI	GCNGC	2 cut(s)	13, 736
PleI	GAGTC	3 cut(s)	334, 952, 1272
PpsI	GAGTC	3 cut(s)	334, 952, 1272
Psp124BI	GAGCTC	1 cut(s)	1103
Psp6I	CCWGG	3 cut(s)	43, 681, 715
PspEI	GGTNACC	1 cut(s)	422
PspGI	CCWGG	3 cut(s)	43, 681, 715
PspN4I	GGNNCC	2 cut(s)	786, 1059
PspPI	GGNCC	2 cut(s)	960, 969
PsyI	GACNNNGTC	1 cut(s)	1315
RsaI	GTAC	4 cut(s)	436, 548, 1028, 1059
RsaNI	GTAC	4 cut(s)	435, 547, 1027, 1058
SacI	GAGCTC	1 cut(s)	1103
SapI	GCTCTTC	1 cut(s)	1091
SaqAI	TTAA	4 cut(s)	123, 510, 675, 1038
SatI	GCNGC	2 cut(s)	12, 735
Sau3AI	GATC	2 cut(s)	1279, 1325
Sau96I	GGNCC	2 cut(s)	960, 969
ScaI	AGTACT	3 cut(s)	436, 548, 1028
SchI	GAGTC	3 cut(s)	335, 953, 1273
ScrFI	CCNGG	3 cut(s)	45, 683, 717
SduI	GDGCHC	2 cut(s)	895, 1103
SfaNI	GCATC	3 cut(s)	439, 746, 833
SfcI	CTRYAG	1 cut(s)	1189
SinI	GGWCC	2 cut(s)	960, 969
SmlI	CTYRAG	2 cut(s)	392, 528
SmoI	CTYRAG	2 cut(s)	392, 528
SspMI	CTAG	3 cut(s)	339, 800, 996
SstI	GAGCTC	1 cut(s)	1103
StyD4I	CCNGG	3 cut(s)	43, 681, 715
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	2 cut(s)	439, 1075
TaqI	TCGA	6 cut(s)	207, 668, 851, 859, 1181, 1267
TaqII	GACCGA	1 cut(s)	948
TatI	WGTACW	3 cut(s)	434, 546, 1026
TfiI	GAWTC	3 cut(s)	560, 1237, 1289
Tru1I	TTAA	4 cut(s)	123, 510, 675, 1038
Tru9I	TTAA	4 cut(s)	123, 510, 675, 1038
TseI	GCWGC	2 cut(s)	11, 734
TspDTI	ATGAA	6 cut(s)	65, 218, 229, 372, 945, 1067
Tth111I	GACNNNGTC	1 cut(s)	1315
Van91I	CCANNNNNTGG	2 cut(s)	479, 1169
VpaK11BI	GGWCC	2 cut(s)	960, 969
XapI	RAATTY	6 cut(s)	185, 412, 496, 538, 793, 806
XmaJI	CCTAGG	1 cut(s)	338
XmnI	GAANNNNTTC	2 cut(s)	1074, 1158
XspI	CTAG	3 cut(s)	339, 800, 996
ZrmI	AGTACT	3 cut(s)	436, 548, 1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.