Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009037

Physical Location & Seq

Genomic Coordinates Reverse (-)

25792417 .. 25797477

Gene Structure 5061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0186300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGATGAAAACAAGGTTATGGTTGATATCCCAGCATCTCAAATGCGACTTGAGGCCCTCTCAACTGCTGGATGATGATAAGGAAGATGGGAGCCGGTGTGAGAAGAAGCGCGTGTCATTGGTGGGGAAGCCACATGGCATTGCGAGGGAGGGGTCAAGGAGCGTTGGACCGGAGAGTAGGATGAAGAAGAGGCATGATGTTTCTGAGCTGGAACAAAGGCTTGCAGAACAATCAAAGATACTCTCAAGTCTTCAACAACAGCATGCTTACAACCCAGATGAGGAGTATGCAGAGGTAGAATCCAGATTGCATTCACATTTGGAATCTTTTCTAGAAACTGCAAGATCATTCAATATGATTTACACCAAGTTCTTGTGGAACTTGAGGAATCTAAGAGACTCACATGCTGCTCTTGCTGTTGGATCATCTGACTTAGTTGCTGGTGAGCCCTCCTGTCACAAGAATATTCTCAGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

159

Amino Acids

18.28

Weight (kDa)

8.46

Isoelectric Point (pI)

71.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_NMP1	PF06694	65 - 123	1.6e-17	Plant nuclear matrix protein 1 (NMP1)
Plant_NMP1	PF06694	123 - 156	4.7e-06	Plant nuclear matrix protein 1 (NMP1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60380
fragaria_vesca	FvH4_7g09850
malus_domestica	MD02G1216600.v1.1 MD07G1103700.v1.1
prunus_persica	Prupe.2G127500_v2.0.a1
pyrus_communis	pycom02g17820 pycom02g17830 pycom07g08460 pycom07g08740 pycom07g08880 pycom07g08900
rosa_chinensis	RchiOBHm_Chr1g0347391
rosa_laevigata	RLG00000028754
rosa_multiflora	Rmu_co8226457.1_g000001 Rmu_sc0002705.1_g000039
rosa_roxburghii	Rroxscaffold_4G00307860
rosa_rugosa	Rorug01G0186300
rosa_samantha	Rh1AG204000 Rh1BG169700 Rh1CG189100 Rh1DG200100
rosa_wichuraiana	Rw1G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AclWI	GGATC	1 cut(s)	430
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	2 cut(s)	254, 352
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	1 cut(s)	430
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	407
Asp700I	GAANNNNTTC	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	2 cut(s)	54, 167
AsuHPI	GGTGA	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	390
BfaI	CTAG	1 cut(s)	332
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	2 cut(s)	54, 167
BmiI	GGNNCC	1 cut(s)	92
BmsI	GCATC	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	242
BplI	GAGNNNNNCTC	2 cut(s)	43, 75
BpuEI	CTTGAG	3 cut(s)	70, 229, 403
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse118I	RCCGGY	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	76, 186
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	394
BseYI	CCCAGC	1 cut(s)	30
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	94, 170
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	390
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	2 cut(s)	344, 422
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	93
BssMI	GATC	2 cut(s)	344, 422
Bst6I	CTCTTC	1 cut(s)	182
BstC8I	GCNNGC	2 cut(s)	222, 264
BstDEI	CTNAG	4 cut(s)	204, 392, 433, 470
BstF5I	GGATG	2 cut(s)	76, 186
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	2 cut(s)	347, 425
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	2 cut(s)	344, 422
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNSI	RCATGY	2 cut(s)	266, 407
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	394
BstV2I	GAAGAC	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	76, 186
Cac8I	GCNNGC	2 cut(s)	222, 264
CfoI	GCGC	1 cut(s)	111
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	54, 167
CviAII	CATG	4 cut(s)	134, 194, 263, 404
CviJI	RGCY	6 cut(s)	55, 93, 130, 208, 220, 448
CviKI_1	RGCY	6 cut(s)	55, 93, 130, 208, 220, 448
DdeI	CTNAG	4 cut(s)	204, 392, 433, 470
DpnI	GATC	2 cut(s)	346, 424
DpnII	GATC	2 cut(s)	344, 422
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	450
Eco32I	GATATC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	54
EcoRV	GATATC	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	450
FaeI	CATG	4 cut(s)	137, 197, 266, 407
FaiI	YATR	7 cut(s)	19, 135, 195, 264, 288, 356, 405
FatI	CATG	4 cut(s)	133, 193, 262, 403
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	2 cut(s)	83, 193
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	1 cut(s)	408
GsaI	CCCAGC	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	2 cut(s)	94, 170
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	4 cut(s)	137, 197, 266, 407
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HinfI	GANTC	4 cut(s)	299, 323, 388, 398
HpaII	CCGG	2 cut(s)	94, 170
HphI	GGTGA	1 cut(s)	455
Hpy188I	TCNGA	3 cut(s)	205, 430, 473
Hpy188III	TCNNGA	2 cut(s)	303, 332
HpyCH4V	TGCA	4 cut(s)	224, 290, 310, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	4 cut(s)	204, 392, 433, 470
Hsp92II	CATG	4 cut(s)	137, 197, 266, 407
HspAI	GCGC	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	344, 422
LmnI	GCTCC	2 cut(s)	90, 159
LpnPI	CCDG	9 cut(s)	44, 53, 107, 183, 194, 288, 316, 426, 466
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	2 cut(s)	346, 424
MboI	GATC	2 cut(s)	344, 422
MboII	GAAGA	5 cut(s)	95, 115, 196, 199, 242
MhlI	GDGCHC	1 cut(s)	450
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	2 cut(s)	145, 400
MnlI	CCTC	9 cut(s)	45, 67, 138, 142, 183, 274, 286, 378, 460
MroXI	GAANNNNTTC	1 cut(s)	327
MspI	CCGG	2 cut(s)	94, 170
Mva1269I	GAATGC	1 cut(s)	310
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	413
NdeII	GATC	2 cut(s)	344, 422
NlaIII	CATG	4 cut(s)	137, 197, 266, 407
NlaIV	GGNNCC	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	455
NspI	RCATGY	2 cut(s)	266, 407
PaeI	GCATGC	1 cut(s)	266
PctI	GAATGC	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	327
PfeI	GAWTC	3 cut(s)	299, 323, 388
PkrI	GCNGC	1 cut(s)	409
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
PspFI	CCCAGC	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	2 cut(s)	54, 167
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	2 cut(s)	344, 422
Sau96I	GGNCC	2 cut(s)	54, 167
SchI	GAGTC	1 cut(s)	392
SduI	GDGCHC	1 cut(s)	450
SetI	ASST	3 cut(s)	17, 210, 297
SfaNI	GCATC	1 cut(s)	43
SinI	GGWCC	1 cut(s)	167
SmlI	CTYRAG	3 cut(s)	49, 244, 382
SmoI	CTYRAG	3 cut(s)	49, 244, 382
SphI	GCATGC	1 cut(s)	266
SspI	AATATT	1 cut(s)	466
SspMI	CTAG	1 cut(s)	332
TfiI	GAWTC	3 cut(s)	299, 323, 388
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	2 cut(s)	20, 197
VpaK11BI	GGWCC	1 cut(s)	167
XbaI	TCTAGA	1 cut(s)	331
XceI	RCATGY	2 cut(s)	266, 407
XmnI	GAANNNNTTC	1 cut(s)	327
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.