Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009037

Physical Location & Seq

Genomic Coordinates Forward (+)

7806230 .. 7808295

Gene Structure 2066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g08460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1737 bp

ATGTTGTTCCTCTCACGCTTAAAAAAAAAAGAAAAAAAAGATTTTGGTTCGCATATACATGCAAAAATTTCAATTTCATTAGGTATGGAGGAAAAGCATAATGTGAAAAATCGCTTATCTTTCATTGTCCTGTACAAGAAAAAAAAAAAGCCAAATTTGTATGCCCATGACTCAAGTAGTTTGCATTGCTATTTGCTTAGGTGCTCAATGAGCTTTGTGTTGCACCAAATTGCTTTTATTTCAATCAAGACGGTGTCGTTTACATTGTTCCACCAAATTGCTTTTAAGATCACCACTCCACAAAATCCGGTAAATCAAAACAAAACAGAAGGTCAATATCGTCATTCTAACCAAACGGTCATAATTATCGACGCCCCACTTCTTAAATTCCTTTCCCCTCTCCTCACACACTTCTTTCCACTCTTTCTTCTTCCTTGCTTTCATAGTCTTCCTTTGCTTCACACAAAATCCAAAACCTCCGCAGAAGCTCAACTGCTCATCAATGGCGGACTCCATCCCCTGCAGAAAGCCCCACTTCCCATTCTCCGATCCAAATCCAGAAGCTCACCGAAACCCGATTCGACACGCTTTGCCGTTTTCATCGTCGTTCTTCCACTTTTCCCCTCACAAGCTCCCGAATTTATCAACCATACGATCCTCACCAAGTTCTGGGAGCTCATTCACGTTATCTTCGTCGGCATTGCCGTGTCCTACGGCTTGTTCAGCAGAAGAAATACTGCTGAAATGGGGTTTGAGAATAGCTCAAATGTGGGTACTTCTGAGTCTTATATGCCTACAACATTCCCCATTTCGTCGAATTTCGATGGCGGGTGTGAATACCCATGTGGGTATGGTGAGAAAAGAGAGGGTGAGAGTTGGAATTCTGGGTATTTTGTGGGTAACCCTGTTGCTGCTGTGGCTCAATCTTGTCATGAAAGCAATGTTATTTATGCCCAATGCAAACCCAGTTTGGGGATTTGTGAAAGTGGGTGTGAAAATTCATGTGGGTATAAAGAGAAAAATGTTACTCAAGCTTGGAATTCTCAGTATTTTCAGGGTGAATCAATGGTGTTTGTAGCTCAACCAAATTATGGTCTTGATGAATGGGGAAACCCCAGATCAATGGTTGATAATCAGCCTTTAGGATTGCCGGTTCGGAGTTCGAAATCGAGGGTGAAAAACCGGGATAGTTTTGAGTTTGTCGCTAGGAGTGAGTTCAGTTTAGGTTCTAAGGGCTCTTTTAATAGCTCTGATGGGGTTAGTAATGAGGATTTTGGTGATTTGGGTGCTATAAATTTAGAACAGAAGTTCAACGAAGCTGCTGCATCACCATCCCCGGTTCATTGGCGTTGGCGTTCTGCAAGGATGGAAAGGGGGAAAAGAGTAGGTAGTACTGCTCATGCTCGTCCTACCAATGAAAACTCGGTCTTTCCAGCCCACATTGTCCTTTACTTCCGAGTCTTAATGACATGTGGGTCATGTGATGATTATCAACATTTAGAGATGGATGATTTAATTTATCTAATATGTTTTACGAGTTGTAACAAATCCCATGAAATACAAAGACAAAACCAAACCACACATGGATCGATAGTGGAATTCACAATTGGACGATTACAGGTGCGGCAGCTAACATGCAAGTGGGGAAGCTTAACAATAGCCGACCAAGACCCTCACGTGCTAATCATAGTGCTTAAACATTTCATTACCAACTTGGTTTTACGAGAGACTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

579

Amino Acids

65.17

Weight (kDa)

8.99

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60380
fragaria_vesca	FvH4_7g09850
malus_domestica	MD02G1216600.v1.1 MD07G1103700.v1.1
prunus_persica	Prupe.2G127500_v2.0.a1
pyrus_communis	pycom02g17820 pycom02g17830 pycom07g08460 pycom07g08740 pycom07g08880 pycom07g08900
rosa_chinensis	RchiOBHm_Chr1g0347391
rosa_laevigata	RLG00000028754
rosa_multiflora	Rmu_co8226457.1_g000001 Rmu_sc0002705.1_g000039
rosa_roxburghii	Rroxscaffold_4G00307860
rosa_rugosa	Rorug01G0186300
rosa_samantha	Rh1AG204000 Rh1BG169700 Rh1CG189100 Rh1DG200100
rosa_wichuraiana	Rw1G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1474
AccB7I	CCANNNNNTGG	2 cut(s)	669, 1091
AciI	CCGC	4 cut(s)	480, 507, 828, 1624
AclWI	GGATC	3 cut(s)	543, 649, 1594
AcvI	CACGTG	1 cut(s)	1678
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	3 cut(s)	134, 775, 1393
AfiI	CCNNNNNNNGG	4 cut(s)	669, 971, 972, 1091
AflIII	ACRYGT	1 cut(s)	1469
AgsI	TTSAA	3 cut(s)	72, 243, 1312
AjuI	GAANNNNNNNTTGG	2 cut(s)	1590, 1622
AloI	GAACNNNNNNTCC	2 cut(s)	1137, 1169
Alw21I	GWGCWC	2 cut(s)	206, 678
Alw26I	GTCTC	1 cut(s)	1721
AlwI	GGATC	3 cut(s)	543, 649, 1594
ApeKI	GCWGC	4 cut(s)	911, 1319, 1322, 1627
AsuC2I	CCSGG	2 cut(s)	1184, 1337
AsuHPI	GGTGA	9 cut(s)	283, 558, 652, 866, 881, 1070, 1186, 1289, 1320
AsuII	TTCGAA	1 cut(s)	1163
BanII	GRGCYC	2 cut(s)	678, 1238
BbrPI	CACGTG	1 cut(s)	1678
BbsI	GAAGAC	1 cut(s)	440
Bbv12I	GWGCWC	2 cut(s)	206, 678
BbvI	GCAGC	4 cut(s)	898, 1306, 1309, 1639
BccI	CCATC	6 cut(s)	522, 818, 1247, 1339, 1360, 1498
BceAI	ACGGC	3 cut(s)	578, 689, 730
BcgI	CGANNNNNNTGC	2 cut(s)	1304, 1338
BcnI	CCSGG	2 cut(s)	1184, 1337
BcoDI	GTCTC	1 cut(s)	1721
BfaI	CTAG	1 cut(s)	1206
BfmI	CTRYAG	1 cut(s)	521
BisI	GCNGC	5 cut(s)	912, 1320, 1323, 1625, 1628
BlsI	GCNGC	5 cut(s)	913, 1321, 1324, 1626, 1629
BmcAI	AGTACT	1 cut(s)	1393
Bme1390I	CCNGG	2 cut(s)	1184, 1337
BmrFI	CCNGG	2 cut(s)	1184, 1337
BmrI	ACTGGG	1 cut(s)	960
BmsI	GCATC	1 cut(s)	1334
BmuI	ACTGGG	1 cut(s)	960
BpiI	GAAGAC	1 cut(s)	440
BplI	GAGNNNNNCTC	2 cut(s)	746, 778
Bpu10I	CCTNAGC	1 cut(s)	197
Bpu14I	TTCGAA	1 cut(s)	1163
BpuEI	CTTGAG	2 cut(s)	157, 1014
BpuMI	CCSGG	2 cut(s)	1184, 1337
Bsa29I	ATCGAT	1 cut(s)	1589
BsaAI	YACGTR	1 cut(s)	1678
BsaBI	GATNNNNATC	2 cut(s)	553, 1488
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	1335
BsaWI	WCCGGW	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	4 cut(s)	669, 971, 972, 1091
Bse118I	RCCGGY	1 cut(s)	1150
Bse1I	ACTGG	1 cut(s)	966
Bse3DI	GCAATG	3 cut(s)	184, 699, 946
Bse8I	GATNNNNATC	2 cut(s)	553, 1488
BseCI	ATCGAT	1 cut(s)	1589
BseDI	CCNNGG	1 cut(s)	1335
BseGI	GGATG	4 cut(s)	514, 1331, 1371, 1513
BseJI	GATNNNNATC	2 cut(s)	553, 1488
BseLI	CCNNNNNNNGG	4 cut(s)	669, 971, 972, 1091
BseMI	GCAATG	3 cut(s)	184, 699, 946
BseMII	CTCAG	2 cut(s)	771, 1058
BseNI	ACTGG	1 cut(s)	966
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	4 cut(s)	898, 1306, 1309, 1639
BshVI	ATCGAT	1 cut(s)	1589
BsiHKAI	GWGCWC	2 cut(s)	206, 678
BsiSI	CCGG	4 cut(s)	308, 1151, 1183, 1337
BslI	CCNNNNNNNGG	4 cut(s)	669, 971, 972, 1091
BsmAI	GTCTC	1 cut(s)	1721
Bsp119I	TTCGAA	1 cut(s)	1163
Bsp1286I	GDGCHC	3 cut(s)	206, 678, 1238
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	5 cut(s)	288, 548, 654, 1118, 1586
BspACI	CCGC	4 cut(s)	480, 507, 828, 1624
BspCNI	CTCAG	2 cut(s)	772, 1057
BspDI	ATCGAT	1 cut(s)	1589
BspHI	TCATGA	1 cut(s)	931
BspMAI	CTGCAG	1 cut(s)	525
BspPI	GGATC	3 cut(s)	543, 649, 1594
BspT104I	TTCGAA	1 cut(s)	1163
BsrDI	GCAATG	3 cut(s)	184, 699, 946
BsrFI	RCCGGY	1 cut(s)	1150
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	966
BssAI	RCCGGY	1 cut(s)	1150
BssECI	CCNNGG	1 cut(s)	1335
BssMI	GATC	5 cut(s)	288, 548, 654, 1118, 1586
BssNI	GRCGYC	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	253, 358
BstACI	GRCGYC	1 cut(s)	372
BstAUI	TGTACA	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	1678
BstBI	TTCGAA	1 cut(s)	1163
BstDEI	CTNAG	4 cut(s)	197, 780, 1044, 1230
BstEII	GGTNACC	1 cut(s)	899
BstF5I	GGATG	4 cut(s)	514, 1331, 1371, 1513
BstKTI	GATC	5 cut(s)	291, 551, 657, 1121, 1589
BstMAI	GTCTC	1 cut(s)	1721
BstMBI	GATC	5 cut(s)	288, 548, 654, 1118, 1586
BstMWI	GCNNNNNNNGC	3 cut(s)	210, 723, 917
BstNSI	RCATGY	3 cut(s)	62, 1473, 1638
BstPI	GGTNACC	1 cut(s)	899
BstSCI	CCNGG	2 cut(s)	1182, 1335
BstSFI	CTRYAG	1 cut(s)	521
BstV1I	GCAGC	4 cut(s)	898, 1306, 1309, 1639
BstV2I	GAAGAC	1 cut(s)	440
BstXI	CCANNNNNNTGG	1 cut(s)	1123
Bsu15I	ATCGAT	1 cut(s)	1589
BsuTUI	ATCGAT	1 cut(s)	1589
BtsCI	GGATG	4 cut(s)	514, 1331, 1371, 1513
CciI	TCATGA	1 cut(s)	931
Cfr10I	RCCGGY	1 cut(s)	1150
ClaI	ATCGAT	1 cut(s)	1589
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	3 cut(s)	133, 774, 1392
CviQI	GTAC	3 cut(s)	133, 774, 1392
DdeI	CTNAG	4 cut(s)	197, 780, 1044, 1230
DpnI	GATC	5 cut(s)	290, 550, 656, 1120, 1588
DpnII	GATC	5 cut(s)	288, 548, 654, 1118, 1586
DrdI	GACNNNNNNGTC	1 cut(s)	1474
DseDI	GACNNNNNNGTC	1 cut(s)	1474
EciI	GGCGGA	1 cut(s)	522
Ecl136II	GAGCTC	1 cut(s)	676
Eco24I	GRGCYC	2 cut(s)	678, 1238
Eco53kI	GAGCTC	1 cut(s)	676
Eco72I	CACGTG	1 cut(s)	1678
Eco91I	GGTNACC	1 cut(s)	899
EcoICRI	GAGCTC	1 cut(s)	676
EcoO65I	GGTNACC	1 cut(s)	899
EcoRI	GAATTC	3 cut(s)	880, 1039, 1598
EcoT38I	GRGCYC	2 cut(s)	678, 1238
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FauI	CCCGC	1 cut(s)	821
Fnu4HI	GCNGC	5 cut(s)	912, 1320, 1323, 1625, 1628
FokI	GGATG	4 cut(s)	501, 1318, 1378, 1520
FriOI	GRGCYC	2 cut(s)	678, 1238
Fsp4HI	GCNGC	5 cut(s)	912, 1320, 1323, 1625, 1628
FspBI	CTAG	1 cut(s)	1206
GluI	GCNGC	5 cut(s)	912, 1320, 1323, 1625, 1628
HapII	CCGG	4 cut(s)	308, 1151, 1183, 1337
HgaI	GACGC	1 cut(s)	380
Hin1I	GRCGYC	1 cut(s)	372
HindIII	AAGCTT	2 cut(s)	1032, 1648
HinfI	GANTC	6 cut(s)	170, 510, 578, 782, 1061, 1458
HpaII	CCGG	4 cut(s)	308, 1151, 1183, 1337
HphI	GGTGA	9 cut(s)	283, 558, 652, 866, 881, 1070, 1186, 1289, 1320
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	5 cut(s)	548, 781, 1158, 1252, 1457
Hpy188III	TCNNGA	5 cut(s)	247, 558, 635, 932, 1097
Hpy8I	GTNNAC	1 cut(s)	261
Hpy99I	CGWCG	4 cut(s)	374, 608, 698, 817
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	2 cut(s)	253, 358
HpyCH4IV	ACGT	2 cut(s)	684, 1677
HpyCH4V	TGCA	8 cut(s)	62, 184, 223, 523, 960, 1325, 1361, 1638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	210, 723, 917
HpyF3I	CTNAG	4 cut(s)	197, 780, 1044, 1230
HpySE526I	ACGT	2 cut(s)	684, 1677
Hsp92I	GRCGYC	1 cut(s)	372
Kzo9I	GATC	5 cut(s)	288, 548, 654, 1118, 1586
LmnI	GCTCC	2 cut(s)	637, 673
Lsp1109I	GCAGC	4 cut(s)	898, 1306, 1309, 1639
LweI	GCATC	1 cut(s)	1334
MaeI	CTAG	1 cut(s)	1206
MaeII	ACGT	2 cut(s)	684, 1677
MaeIII	GTNAC	3 cut(s)	899, 1024, 1541
MalI	GATC	5 cut(s)	290, 550, 656, 1120, 1588
MboI	GATC	5 cut(s)	288, 548, 654, 1118, 1586
MboII	GAAGA	6 cut(s)	419, 422, 440, 602, 682, 741
MfeI	CAATTG	1 cut(s)	1605
MhlI	GDGCHC	3 cut(s)	206, 678, 1238
MlyI	GAGTC	4 cut(s)	164, 504, 791, 1467
MmeI	TCCRAC	1 cut(s)	857
MseI	TTAA	8 cut(s)	20, 285, 384, 1242, 1463, 1514, 1652, 1695
MslI	CAYNNNNRTG	3 cut(s)	57, 704, 1639
MspI	CCGG	4 cut(s)	308, 1151, 1183, 1337
MspR9I	CCNGG	2 cut(s)	1184, 1337
MunI	CAATTG	1 cut(s)	1605
MwoI	GCNNNNNNNGC	3 cut(s)	210, 723, 917
NciI	CCSGG	2 cut(s)	1184, 1337
NdeII	GATC	5 cut(s)	288, 548, 654, 1118, 1586
NspI	RCATGY	3 cut(s)	62, 1473, 1638
NspV	TTCGAA	1 cut(s)	1163
PagI	TCATGA	1 cut(s)	931
PciI	ACATGT	1 cut(s)	1469
PcsI	WCGNNNNNNNCGW	2 cut(s)	690, 702
PfeI	GAWTC	2 cut(s)	578, 1061
PflFI	GACNNNGTC	1 cut(s)	253
PflMI	CCANNNNNTGG	2 cut(s)	669, 1091
PkrI	GCNGC	5 cut(s)	913, 1321, 1324, 1626, 1629
PleI	GAGTC	4 cut(s)	164, 504, 790, 1466
PmaCI	CACGTG	1 cut(s)	1678
PmlI	CACGTG	1 cut(s)	1678
PpsI	GAGTC	4 cut(s)	164, 504, 790, 1466
Ppu21I	YACGTR	1 cut(s)	1678
PscI	ACATGT	1 cut(s)	1469
Psp124BI	GAGCTC	1 cut(s)	678
PspCI	CACGTG	1 cut(s)	1678
PspEI	GGTNACC	1 cut(s)	899
PstI	CTGCAG	1 cut(s)	525
PsyI	GACNNNGTC	1 cut(s)	253
RsaI	GTAC	3 cut(s)	134, 775, 1393
RsaNI	GTAC	3 cut(s)	133, 774, 1392
RseI	CAYNNNNRTG	3 cut(s)	57, 704, 1639
SacI	GAGCTC	1 cut(s)	678
SaqAI	TTAA	8 cut(s)	20, 285, 384, 1242, 1463, 1514, 1652, 1695
SatI	GCNGC	5 cut(s)	912, 1320, 1323, 1625, 1628
Sau3AI	GATC	5 cut(s)	288, 548, 654, 1118, 1586
ScaI	AGTACT	1 cut(s)	1393
SchI	GAGTC	4 cut(s)	164, 504, 791, 1467
ScrFI	CCNGG	2 cut(s)	1184, 1337
SduI	GDGCHC	3 cut(s)	206, 678, 1238
SfaNI	GCATC	1 cut(s)	1334
SfcI	CTRYAG	1 cut(s)	521
SfuI	TTCGAA	1 cut(s)	1163
SmiMI	CAYNNNNRTG	3 cut(s)	57, 704, 1639
SmlI	CTYRAG	2 cut(s)	172, 1029
SmoI	CTYRAG	2 cut(s)	172, 1029
SsiI	CCGC	4 cut(s)	480, 507, 828, 1624
SspMI	CTAG	1 cut(s)	1206
SstI	GAGCTC	1 cut(s)	678
StyD4I	CCNGG	2 cut(s)	1182, 1335
TaaI	ACNGT	2 cut(s)	253, 358
TaiI	ACGT	2 cut(s)	687, 1680
TaqI	TCGA	7 cut(s)	369, 581, 815, 822, 1163, 1169, 1589
TaqII	GACCGA	1 cut(s)	1414
TatI	WGTACW	2 cut(s)	132, 1391
TauI	GCSGC	1 cut(s)	1627
TfiI	GAWTC	2 cut(s)	578, 1061
Tru1I	TTAA	8 cut(s)	20, 285, 384, 1242, 1463, 1514, 1652, 1695
Tru9I	TTAA	8 cut(s)	20, 285, 384, 1242, 1463, 1514, 1652, 1695
TseI	GCWGC	4 cut(s)	911, 1319, 1322, 1627
Tth111I	GACNNNGTC	1 cut(s)	253
Van91I	CCANNNNNTGG	2 cut(s)	669, 1091
XceI	RCATGY	3 cut(s)	62, 1473, 1638
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1580
XspI	CTAG	1 cut(s)	1206
ZrmI	AGTACT	1 cut(s)	1393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.