Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8226457.1

Orthogroup ID

OG0009037

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 543

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8226457.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

gatcaatatgattcaggtaagaaagagttggggacagggtctttcggatcagagaagaagcctgcaagcctcagcaaatctacatcaagaggaaaatcagtcagaacaatcaggggtagtagactgaccactcatgacaaggttgaaaacaatcaaaagatgtttgataatggtgaagctgtatttatgagaaaagagaaaatgcaaaatggaggacttgataatctgtgtgatatgccaaagccaccttttcccaagtaccagaaggaccagatacaagacttttttaaccatctcaatgtgcagtctgaggaagaatcggaaagtgaggctgaaaactttgaagtgagctcagaagatagagtggaagctgctgctgctgcattttgcaactctgtcaatgttgcagcaggaccagactctgaggttgataagaaggctggtgagtttatagccaaatttagagagcagataaggcgtcagaaagttgcatcaattgacaaatcaagagggctcggcgttagtgggaatcgctctaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

180

Amino Acids

19.99

Weight (kDa)

7.91

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60380
fragaria_vesca	FvH4_7g09850
malus_domestica	MD02G1216600.v1.1 MD07G1103700.v1.1
prunus_persica	Prupe.2G127500_v2.0.a1
pyrus_communis	pycom02g17820 pycom02g17830 pycom07g08460 pycom07g08740 pycom07g08880 pycom07g08900
rosa_chinensis	RchiOBHm_Chr1g0347391
rosa_laevigata	RLG00000028754
rosa_multiflora	Rmu_co8226457.1_g000001 Rmu_sc0002705.1_g000039
rosa_roxburghii	Rroxscaffold_4G00307860
rosa_rugosa	Rorug01G0186300
rosa_samantha	Rh1AG204000 Rh1BG169700 Rh1CG189100 Rh1DG200100
rosa_wichuraiana	Rw1G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	121
AclWI	GGATC	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	478
AfaI	GTAC	1 cut(s)	260
AgsI	TTSAA	2 cut(s)	146, 344
AluBI	AGCT	3 cut(s)	179, 351, 371
AluI	AGCT	3 cut(s)	179, 351, 371
Alw21I	GWGCWC	1 cut(s)	353
AlwI	GGATC	1 cut(s)	55
AlwNI	CAGNNNCTG	1 cut(s)	422
ApeKI	GCWGC	5 cut(s)	371, 374, 377, 380, 407
ApoI	RAATTY	1 cut(s)	458
AspS9I	GGNCC	2 cut(s)	268, 413
AsuHPI	GGTGA	2 cut(s)	185, 455
AvaII	GGWCC	2 cut(s)	268, 413
BanII	GRGCYC	2 cut(s)	353, 516
Bbv12I	GWGCWC	1 cut(s)	353
BbvCI	CCTCAGC	1 cut(s)	71
BbvI	GCAGC	5 cut(s)	358, 361, 364, 367, 419
BccI	CCATC	1 cut(s)	300
BfaI	CTAG	1 cut(s)	537
BisI	GCNGC	5 cut(s)	372, 375, 378, 381, 408
BlsI	GCNGC	5 cut(s)	373, 376, 379, 382, 409
Bme18I	GGWCC	2 cut(s)	268, 413
BmgT120I	GGNCC	2 cut(s)	268, 413
BmsI	GCATC	1 cut(s)	500
Bpu10I	CCTNAGC	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	478
BseMII	CTCAG	4 cut(s)	85, 300, 366, 414
BseXI	GCAGC	5 cut(s)	358, 361, 364, 367, 419
BsgI	GTGCAG	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	353
BslFI	GGGAC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	46
Bsp1286I	GDGCHC	2 cut(s)	353, 516
Bsp143I	GATC	1 cut(s)	47
BspCNI	CTCAG	4 cut(s)	84, 301, 365, 415
BspHI	TCATGA	1 cut(s)	133
BspPI	GGATC	1 cut(s)	55
BssMI	GATC	1 cut(s)	47
BssNI	GRCGYC	1 cut(s)	478
BstACI	GRCGYC	1 cut(s)	478
BstC8I	GCNNGC	2 cut(s)	63, 67
BstDEI	CTNAG	4 cut(s)	71, 309, 352, 423
BstKTI	GATC	2 cut(s)	4, 50
BstMBI	GATC	1 cut(s)	47
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 380, 475
BstV1I	GCAGC	5 cut(s)	358, 361, 364, 367, 419
Cac8I	GCNNGC	2 cut(s)	63, 67
CaiI	CAGNNNCTG	1 cut(s)	422
CciI	TCATGA	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	268, 413
CseI	GACGC	1 cut(s)	467
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	1 cut(s)	134
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	4 cut(s)	71, 309, 352, 423
DpnI	GATC	2 cut(s)	3, 49
DpnII	GATC	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	351
Eco24I	GRGCYC	2 cut(s)	353, 516
Eco47I	GGWCC	2 cut(s)	268, 413
Eco53kI	GAGCTC	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	351
EcoT38I	GRGCYC	2 cut(s)	353, 516
FaeI	CATG	1 cut(s)	137
FaiI	YATR	5 cut(s)	9, 135, 188, 236, 452
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	1 cut(s)	133
FblI	GTMKAC	1 cut(s)	121
Fnu4HI	GCNGC	5 cut(s)	372, 375, 378, 381, 408
FriOI	GRGCYC	2 cut(s)	353, 516
Fsp4HI	GCNGC	5 cut(s)	372, 375, 378, 381, 408
FspBI	CTAG	1 cut(s)	537
GluI	GCNGC	5 cut(s)	372, 375, 378, 381, 408
HgaI	GACGC	1 cut(s)	467
Hin1I	GRCGYC	1 cut(s)	478
Hin1II	CATG	1 cut(s)	137
HinfI	GANTC	4 cut(s)	11, 317, 419, 529
HphI	GGTGA	2 cut(s)	185, 455
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	8 cut(s)	47, 52, 104, 310, 322, 355, 424, 483
Hpy188III	TCNNGA	3 cut(s)	87, 134, 507
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	259, 430
HpyCH4V	TGCA	7 cut(s)	65, 205, 304, 383, 390, 407, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 380, 475
HpyF3I	CTNAG	4 cut(s)	71, 309, 352, 423
Hsp92I	GRCGYC	1 cut(s)	478
Hsp92II	CATG	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	47
LpnPI	CCDG	8 cut(s)	21, 75, 97, 275, 284, 396, 426, 429
Lsp1109I	GCAGC	5 cut(s)	358, 361, 364, 367, 419
LweI	GCATC	1 cut(s)	500
MaeI	CTAG	1 cut(s)	537
MalI	GATC	2 cut(s)	3, 49
MboI	GATC	1 cut(s)	47
MboII	GAAGA	3 cut(s)	67, 326, 368
MfeI	CAATTG	1 cut(s)	495
MhlI	GDGCHC	2 cut(s)	353, 516
MluCI	AATT	2 cut(s)	458, 495
MlyI	GAGTC	1 cut(s)	413
MnlI	CCTC	7 cut(s)	80, 83, 206, 304, 322, 418, 503
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	297
MunI	CAATTG	1 cut(s)	495
MwoI	GCNNNNNNNGC	3 cut(s)	377, 380, 475
NdeII	GATC	1 cut(s)	47
NlaIII	CATG	1 cut(s)	137
NmeAIII	GCCGAG	1 cut(s)	495
PagI	TCATGA	1 cut(s)	133
PfeI	GAWTC	3 cut(s)	11, 317, 529
PflFI	GACNNNGTC	1 cut(s)	37
PkrI	GCNGC	5 cut(s)	373, 376, 379, 382, 409
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	353
PspPI	GGNCC	2 cut(s)	268, 413
PstNI	CAGNNNCTG	1 cut(s)	422
PsyI	GACNNNGTC	1 cut(s)	37
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	297
SacI	GAGCTC	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	5 cut(s)	372, 375, 378, 381, 408
Sau3AI	GATC	1 cut(s)	47
Sau96I	GGNCC	2 cut(s)	268, 413
SchI	GAGTC	1 cut(s)	413
SduI	GDGCHC	2 cut(s)	353, 516
SetI	ASST	8 cut(s)	19, 144, 181, 250, 353, 373, 429, 542
SfaNI	GCATC	1 cut(s)	500
SinI	GGWCC	2 cut(s)	268, 413
SmiMI	CAYNNNNRTG	1 cut(s)	297
Sse9I	AATT	2 cut(s)	458, 495
SspMI	CTAG	1 cut(s)	537
SstI	GAGCTC	1 cut(s)	353
TasI	AATT	2 cut(s)	458, 495
TfiI	GAWTC	3 cut(s)	11, 317, 529
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseI	GCWGC	5 cut(s)	371, 374, 377, 380, 407
Tth111I	GACNNNGTC	1 cut(s)	37
VpaK11BI	GGWCC	2 cut(s)	268, 413
XapI	RAATTY	1 cut(s)	458
XmiI	GTMKAC	1 cut(s)	121
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.