Prupe.2G127500_v2.0.a1

Cotton fibre expressed protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
18486516 .. 18488784
2269 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G127500.1

Sequence Viewer

Length: 1893 bp
ATGGAGGACCCAAGCCCTTACAGAAAACCCCATTTCCCATATTCAGAGCTAAACTCAGCAATTCATCCAAACCCCATTAAACAAGGTAAGTCCTACACGATGCACTTTCTCTTTAAAGCTCTCTTCTTTGCCCTTGTTATTATGATTATACCACTATTTCCTTCACAAGCTCCTGACTTTATCAACCACACCATACTCACCAAGTTCTGGGAGCTTATTCACCTTGTTTTCATTGGCATTGCTGTGTCCTATGGCTTGTTTAGCAGAAGAAATGTTGAAAGGGGATTTGAGAATCCCTCAAATCTTGGTAGTTCAGAGTCTTATATGCCAAGAATTTTTCCTGTTTCATCAAATTTTGATGATGGATATGAAAACCCATGTGGGTCTGATGAGAAAAGAGTGGTTGGGCTTGGGAGTTGGAATTCTCAGTATTTTGTAGGTAACCCTGTTACTGTATCTTCTCATGAAAGCACTGGTTTTGATGCCCAGTGCAAACCCAGTTTGCCAGTTCATGAACGTGGTTCTGAAAATTCATATGGGTACAAGGAGAATAATCTAACTCAAGCTTGGAGTTCTCAGTACTTTCATGGTGAACCAATGGTGTTTGTAGCTCAACCAAATTATGGTTTTGATGAATGGGGTAAACCCAGATCAATTGTTGATTCTGAGCCATTAGGGTTGCCTATTCGGAGCTTGAAATCAAGGGTAATAGACCAGGATAGTTCTGAATTTGTGACTGGGAGTGAGTCTGGTTCAAGTTCTAATTTTTCACCTAATAGTTCTGATAAGAGTAGAAATGGGAAATTTGGTGATTTGGGTCCTCTAAATTTGGAAGAGGAATTCAATGAAGCCACTGCAGCACCTTTCCCAGTTCATAGGGGTTCGAGTTCGGGAAGGATGGAAATGGGGAAAAGGGTAGGTAGTAGTAGTCGTCCTTCACATTTTAGGCCACTGTCAGTTGATGAAACTCAGTTTGAATCAATGAAAACTCGGTCCTTCCGGTCCACATTGTCTTTCTCTTCCGAGTCTTCTCAAACTAGTTCCATGTCTTCTTCACCAAAAGAGGAGTCTTTTGCGCGCTCTATATCTTCAGAGGCTCTGAACTCAAAAATGAATAATTTGAAGAAAAGGAAGAGTTCTCAAGGGTCTTCTCCTTCAGGCTTACCCTCATCACCACCAAAACCAATTACTGAAAAAGTTTCAATGAGTACACTGCATTCTCGGGGCTATAGCATTGGTTCTTTCCATGAGGAGGACTTGAGGAGAAGCTCAGAAAATTACTTCAAGGGCTTGAGTGGAAGTGGAAGTGAAGAGGATCAATTGGGTAACAAAGAGTTAGGGCCAGCTTCTTTGAGATCAGATGTGAAACCTGCAAGCCTCACTAAAGCTTCATTAAGGGGAAGATCAGTTAGAACAATCAGACCAAGTAGACTGACCACTGATGACAAGGTTGAAAAGATGTGTGATAATGGTGGAGCTATATCTATGAGGAAAGATATAATTCAAAATGGAGGAACCGACAAGAAGTTTTTTGACAATGTAACTGGTAAGCTAGATCTTGGCAATTCCTTGCACATGCCAAAGCCAACAATTCCCAAGTATCAGAAGAAAGAGATGCAAGAATTTCATGGCAATGTTGTTGCCGAAGAGTCTGAAGACGACTCGGAAAGTGAGGCCGAAAACTTTCTAGTAAGTTCAGAAGATGAAGATGCTGATCCTCCTGCTGCTGCTGCTGCTACATGTAACTCTGTCAATGTTGCAGGACCAGACTCTGAGGTTGATAAGAAGGCCGGTGAGTTTATAGCCAAATTTCGAGAGCAGATAAGGCTTCAAAAAGTAGCATCACTTGACAGGTCAAAAGGGCTAGGCACGAGTGGTAATTGCTTTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

631

Amino Acids

69.4

Weight (kDa)

6.22

Isoelectric Point (pI)

54.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1378
AccB7I CCANNNNNTGG 2 cut(s) 207, 623
AccI GTMKAC 1 cut(s) 1429
AccII CGCG 1 cut(s) 1078
AclWI GGATC 2 cut(s) 1323, 1709
AcuI CTGAAG 3 cut(s) 1074, 1140, 1674
AfaI GTAC 3 cut(s) 542, 581, 1210
AfiI CCNNNNNNNGG 3 cut(s) 207, 623, 1252
AflIII ACRYGT 1 cut(s) 1739
AhlI ACTAGT 1 cut(s) 1037
AjnI CCWGG 1 cut(s) 714
AlwI GGATC 2 cut(s) 1323, 1709
AlwNI CAGNNNCTG 1 cut(s) 1772
Ama87I CYCGRG 1 cut(s) 1221
AoxI GGCC 4 cut(s) 947, 1340, 1674, 1788
ApeKI GCWGC 5 cut(s) 857, 1724, 1727, 1730, 1733
ArsI GACNNNNNNTTYG 2 cut(s) 1052, 1084
Asp700I GAANNNNTTC 1 cut(s) 1683
AspLEI GCGC 2 cut(s) 1078, 1080
AspS9I GGNCC 6 cut(s) 7, 818, 993, 1002, 1340, 1763
AsuHPI GGTGA 8 cut(s) 190, 212, 602, 762, 821, 1047, 1164, 1805
AvaI CYCGRG 1 cut(s) 1221
AvaII GGWCC 5 cut(s) 7, 818, 993, 1002, 1763
BarI GAAGNNNNNNTAC 2 cut(s) 919, 951
BauI CACGAG 1 cut(s) 1870
BbsI GAAGAC 4 cut(s) 1020, 1041, 1140, 1662
BbvI GCAGC 5 cut(s) 869, 1711, 1714, 1717, 1720
BccI CCATC 2 cut(s) 356, 892
BciT130I CCWGG 1 cut(s) 716
BcuI ACTAGT 1 cut(s) 1037
BfaI CTAG 4 cut(s) 1038, 1553, 1688, 1865
BfmI CTRYAG 2 cut(s) 855, 1228
BfuAI ACCTGC 1 cut(s) 1378
BglII AGATCT 1 cut(s) 1555
BisI GCNGC 5 cut(s) 858, 1725, 1728, 1731, 1734
BlsI GCNGC 5 cut(s) 859, 1726, 1729, 1732, 1735
BmcAI AGTACT 1 cut(s) 581
Bme1390I CCNGG 1 cut(s) 716
Bme18I GGWCC 5 cut(s) 7, 818, 993, 1002, 1763
BmeT110I CYCGRG 1 cut(s) 1221
BmgT120I GGNCC 6 cut(s) 7, 818, 993, 1002, 1340, 1763
BmiI GGNNCC 3 cut(s) 9, 819, 1516
BmrFI CCNGG 1 cut(s) 716
BmrI ACTGGG 4 cut(s) 481, 492, 747, 863
BmsI GCATC 5 cut(s) 90, 472, 1605, 1699, 1850
BmuI ACTGGG 4 cut(s) 481, 492, 747, 863
BpiI GAAGAC 4 cut(s) 1020, 1041, 1140, 1662
BplI GAGNNNNNCTC 4 cut(s) 38, 70, 281, 313
BpuEI CTTGAG 4 cut(s) 546, 1125, 1279, 1312
BsaBI GATNNNNATC 1 cut(s) 1713
BsaWI WCCGGW 1 cut(s) 999
Bsc4I CCNNNNNNNGG 3 cut(s) 207, 623, 1252
Bse118I RCCGGY 1 cut(s) 1790
Bse1I ACTGG 7 cut(s) 478, 487, 498, 506, 742, 869, 1549
Bse3DI GCAATG 2 cut(s) 237, 1639
Bse8I GATNNNNATC 1 cut(s) 1713
BseBI CCWGG 1 cut(s) 716
BseGI GGATG 2 cut(s) 64, 903
BseJI GATNNNNATC 1 cut(s) 1713
BseLI CCNNNNNNNGG 3 cut(s) 207, 623, 1252
BseMI GCAATG 2 cut(s) 237, 1639
BseMII CTCAG 7 cut(s) 69, 440, 590, 657, 983, 1284, 1764
BseNI ACTGG 7 cut(s) 478, 487, 498, 506, 742, 869, 1549
BsePI GCGCGC 1 cut(s) 1076
BseRI GAGGAG 3 cut(s) 1079, 1265, 1276
BseXI GCAGC 5 cut(s) 869, 1711, 1714, 1717, 1720
Bsh1236I CGCG 1 cut(s) 1078
BshFI GGCC 4 cut(s) 949, 1342, 1676, 1790
BsiHKCI CYCGRG 1 cut(s) 1221
BsiSI CCGG 2 cut(s) 1000, 1791
BslI CCNNNNNNNGG 3 cut(s) 207, 623, 1252
BsmI GAATGC 1 cut(s) 1216
BsnI GGCC 4 cut(s) 949, 1342, 1676, 1790
BsoBI CYCGRG 1 cut(s) 1221
Bsp143I GATC 6 cut(s) 650, 1315, 1355, 1403, 1555, 1714
BspANI GGCC 4 cut(s) 949, 1342, 1676, 1790
BspCNI CTCAG 7 cut(s) 68, 439, 589, 658, 982, 1283, 1765
BspFNI CGCG 1 cut(s) 1078
BspHI TCATGA 2 cut(s) 463, 511
BspLI GGNNCC 3 cut(s) 9, 819, 1516
BspMAI CTGCAG 1 cut(s) 859
BspMI ACCTGC 1 cut(s) 1378
BspPI GGATC 2 cut(s) 1323, 1709
BsrDI GCAATG 2 cut(s) 237, 1639
BsrFI RCCGGY 1 cut(s) 1790
BsrI ACTGG 7 cut(s) 478, 487, 498, 506, 742, 869, 1549
BssAI RCCGGY 1 cut(s) 1790
BssHII GCGCGC 1 cut(s) 1076
BssMI GATC 6 cut(s) 650, 1315, 1355, 1403, 1555, 1714
BssSI CACGAG 1 cut(s) 1870
Bst2BI CACGAG 1 cut(s) 1870
Bst2UI CCWGG 1 cut(s) 716
Bst4CI ACNGT 2 cut(s) 454, 954
Bst6I CTCTTC 6 cut(s) 128, 828, 1024, 1127, 1305, 1641
BstC8I GCNNGC 3 cut(s) 1078, 1344, 1375
BstDEI CTNAG 7 cut(s) 55, 426, 576, 666, 969, 1270, 1773
BstEII GGTNACC 1 cut(s) 440
BstF5I GGATG 2 cut(s) 64, 903
BstFNI CGCG 1 cut(s) 1078
BstHHI GCGC 2 cut(s) 1078, 1080
BstKTI GATC 6 cut(s) 653, 1318, 1358, 1406, 1558, 1717
BstMBI GATC 6 cut(s) 650, 1315, 1355, 1403, 1555, 1714
BstMWI GCNNNNNNNGC 5 cut(s) 261, 857, 1730, 1733, 1825
BstNI CCWGG 1 cut(s) 716
BstNSI RCATGY 2 cut(s) 1579, 1743
BstPI GGTNACC 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 714
BstSFI CTRYAG 2 cut(s) 855, 1228
BstUI CGCG 1 cut(s) 1078
BstV1I GCAGC 5 cut(s) 869, 1711, 1714, 1717, 1720
BstV2I GAAGAC 4 cut(s) 1020, 1041, 1140, 1662
BstX2I RGATCY 1 cut(s) 1555
BstYI RGATCY 1 cut(s) 1555
BsuRI GGCC 4 cut(s) 949, 1342, 1676, 1790
BtsCI GGATG 2 cut(s) 64, 903
BtsI GCAGTG 2 cut(s) 852, 1211
BtsIMutI CAGTG 6 cut(s) 471, 494, 852, 950, 1211, 1437
BveI ACCTGC 1 cut(s) 1378
Cac8I GCNNGC 3 cut(s) 1078, 1344, 1375
CaiI CAGNNNCTG 1 cut(s) 1772
CciI TCATGA 2 cut(s) 463, 511
CfoI GCGC 2 cut(s) 1078, 1080
Cfr10I RCCGGY 1 cut(s) 1790
Cfr13I GGNCC 6 cut(s) 7, 818, 993, 1002, 1340, 1763
Csp6I GTAC 3 cut(s) 541, 580, 1209
CviAII CATG 9 cut(s) 378, 464, 512, 587, 1045, 1247, 1576, 1628, 1740
CviQI GTAC 3 cut(s) 541, 580, 1209
DdeI CTNAG 7 cut(s) 55, 426, 576, 666, 969, 1270, 1773
DpnI GATC 6 cut(s) 652, 1317, 1357, 1405, 1557, 1716
DpnII GATC 6 cut(s) 650, 1315, 1355, 1403, 1555, 1714
DraI TTTAAA 1 cut(s) 115
Eam1104I CTCTTC 6 cut(s) 128, 828, 1024, 1127, 1305, 1641
EarI CTCTTC 6 cut(s) 128, 828, 1024, 1127, 1305, 1641
Eco47I GGWCC 5 cut(s) 7, 818, 993, 1002, 1763
Eco57I CTGAAG 3 cut(s) 1074, 1140, 1674
Eco88I CYCGRG 1 cut(s) 1221
Eco91I GGTNACC 1 cut(s) 440
EcoO109I RGGNCCY 2 cut(s) 7, 818
EcoO65I GGTNACC 1 cut(s) 440
EcoRI GAATTC 2 cut(s) 421, 839
EcoRII CCWGG 1 cut(s) 714
FaeI CATG 9 cut(s) 381, 467, 515, 590, 1048, 1250, 1579, 1631, 1743
FatI CATG 9 cut(s) 377, 463, 511, 586, 1044, 1246, 1575, 1627, 1739
FauNDI CATATG 1 cut(s) 535
FblI GTMKAC 1 cut(s) 1429
Fnu4HI GCNGC 5 cut(s) 858, 1725, 1728, 1731, 1734
FokI GGATG 2 cut(s) 51, 910
Fsp4HI GCNGC 5 cut(s) 858, 1725, 1728, 1731, 1734
FspBI CTAG 4 cut(s) 1038, 1553, 1688, 1865
GlaI GCGC 2 cut(s) 1077, 1079
GluI GCNGC 5 cut(s) 858, 1725, 1728, 1731, 1734
HaeIII GGCC 4 cut(s) 949, 1342, 1676, 1790
HapII CCGG 2 cut(s) 1000, 1791
HhaI GCGC 2 cut(s) 1078, 1080
Hin1II CATG 9 cut(s) 381, 467, 515, 590, 1048, 1250, 1579, 1631, 1743
Hin6I GCGC 2 cut(s) 1076, 1078
HinP1I GCGC 2 cut(s) 1076, 1078
HindIII AAGCTT 2 cut(s) 564, 1386
HpaII CCGG 2 cut(s) 1000, 1791
HphI GGTGA 8 cut(s) 190, 212, 602, 762, 821, 1047, 1164, 1805
Hpy166II GTNNAC 5 cut(s) 593, 644, 1005, 1211, 1430
Hpy188III TCNNGA 5 cut(s) 173, 464, 512, 891, 1814
Hpy8I GTNNAC 5 cut(s) 593, 644, 1005, 1211, 1430
HpyAV CCTTC 6 cut(s) 171, 888, 945, 1006, 1164, 1780
HpyCH4III ACNGT 2 cut(s) 454, 954
HpyCH4IV ACGT 1 cut(s) 517
HpyCH4V TGCA 8 cut(s) 103, 492, 857, 1216, 1373, 1573, 1618, 1760
HpyF10VI GCNNNNNNNGC 5 cut(s) 261, 857, 1730, 1733, 1825
HpyF3I CTNAG 7 cut(s) 55, 426, 576, 666, 969, 1270, 1773
HpySE526I ACGT 1 cut(s) 517
Hsp92II CATG 9 cut(s) 381, 467, 515, 590, 1048, 1250, 1579, 1631, 1743
HspAI GCGC 2 cut(s) 1076, 1078
Kzo9I GATC 6 cut(s) 650, 1315, 1355, 1403, 1555, 1714
LmnI GCTCC 4 cut(s) 175, 211, 690, 1475
Lsp1109I GCAGC 5 cut(s) 869, 1711, 1714, 1717, 1720
LweI GCATC 5 cut(s) 90, 472, 1605, 1699, 1850
MaeI CTAG 4 cut(s) 1038, 1553, 1688, 1865
MaeII ACGT 1 cut(s) 517
MaeIII GTNAC 6 cut(s) 440, 448, 733, 1325, 1540, 1742
MalI GATC 6 cut(s) 652, 1317, 1357, 1405, 1557, 1716
MboI GATC 6 cut(s) 650, 1315, 1355, 1403, 1555, 1714
MfeI CAATTG 2 cut(s) 654, 1319
MflI RGATCY 1 cut(s) 1555
MlyI GAGTC 7 cut(s) 326, 755, 1034, 1076, 1655, 1658, 1763
MmeI TCCRAC 1 cut(s) 398
MroXI GAANNNNTTC 1 cut(s) 1683
MseI TTAA 3 cut(s) 78, 114, 1394
MslI CAYNNNNRTG 3 cut(s) 242, 516, 1632
MspI CCGG 2 cut(s) 1000, 1791
MspR9I CCNGG 1 cut(s) 716
MunI CAATTG 2 cut(s) 654, 1319
Mva1269I GAATGC 1 cut(s) 1216
MvaI CCWGG 1 cut(s) 716
MvnI CGCG 1 cut(s) 1078
MwoI GCNNNNNNNGC 5 cut(s) 261, 857, 1730, 1733, 1825
NdeI CATATG 1 cut(s) 535
NdeII GATC 6 cut(s) 650, 1315, 1355, 1403, 1555, 1714
NlaIII CATG 9 cut(s) 381, 467, 515, 590, 1048, 1250, 1579, 1631, 1743
NlaIV GGNNCC 3 cut(s) 9, 819, 1516
NmuCI GTSAC 1 cut(s) 733
NspI RCATGY 2 cut(s) 1579, 1743
PagI TCATGA 2 cut(s) 463, 511
PauI GCGCGC 1 cut(s) 1076
PciI ACATGT 1 cut(s) 1739
PctI GAATGC 1 cut(s) 1216
PdmI GAANNNNTTC 1 cut(s) 1683
PfeI GAWTC 3 cut(s) 292, 662, 977
PflMI CCANNNNNTGG 2 cut(s) 207, 623
PkrI GCNGC 5 cut(s) 859, 1726, 1729, 1732, 1735
PleI GAGTC 7 cut(s) 325, 754, 1033, 1075, 1655, 1657, 1763
PpsI GAGTC 7 cut(s) 325, 754, 1033, 1075, 1655, 1657, 1763
PpuMI RGGWCCY 2 cut(s) 7, 818
PscI ACATGT 1 cut(s) 1739
Psp5II RGGWCCY 2 cut(s) 7, 818
Psp6I CCWGG 1 cut(s) 714
PspEI GGTNACC 1 cut(s) 440
PspGI CCWGG 1 cut(s) 714
PspN4I GGNNCC 3 cut(s) 9, 819, 1516
PspPI GGNCC 6 cut(s) 7, 818, 993, 1002, 1340, 1763
PspPPI RGGWCCY 2 cut(s) 7, 818
PstI CTGCAG 1 cut(s) 859
PstNI CAGNNNCTG 1 cut(s) 1772
PsuI RGATCY 1 cut(s) 1555
PteI GCGCGC 1 cut(s) 1076
RsaI GTAC 3 cut(s) 542, 581, 1210
RsaNI GTAC 3 cut(s) 541, 580, 1209
RseI CAYNNNNRTG 3 cut(s) 242, 516, 1632
SaqAI TTAA 3 cut(s) 78, 114, 1394
SatI GCNGC 5 cut(s) 858, 1725, 1728, 1731, 1734
Sau3AI GATC 6 cut(s) 650, 1315, 1355, 1403, 1555, 1714
Sau96I GGNCC 6 cut(s) 7, 818, 993, 1002, 1340, 1763
ScaI AGTACT 1 cut(s) 581
SchI GAGTC 7 cut(s) 326, 755, 1034, 1076, 1655, 1658, 1763
ScrFI CCNGG 1 cut(s) 716
SfaNI GCATC 5 cut(s) 90, 472, 1605, 1699, 1850
SfcI CTRYAG 2 cut(s) 855, 1228
SinI GGWCC 5 cut(s) 7, 818, 993, 1002, 1763
SmiMI CAYNNNNRTG 3 cut(s) 242, 516, 1632
SmlI CTYRAG 4 cut(s) 561, 1140, 1258, 1291
SmoI CTYRAG 4 cut(s) 561, 1140, 1258, 1291
SpeI ACTAGT 1 cut(s) 1037
SspMI CTAG 4 cut(s) 1038, 1553, 1688, 1865
StyD4I CCNGG 1 cut(s) 714
TaaI ACNGT 2 cut(s) 454, 954
TaiI ACGT 1 cut(s) 520
TaqI TCGA 2 cut(s) 884, 1813
TaqII GACCGA 1 cut(s) 981
TatI WGTACW 2 cut(s) 579, 1208
TfiI GAWTC 3 cut(s) 292, 662, 977
Tru1I TTAA 3 cut(s) 78, 114, 1394
Tru9I TTAA 3 cut(s) 78, 114, 1394
TscAI CASTG 6 cut(s) 478, 494, 859, 957, 1218, 1444
TseFI GTSAC 1 cut(s) 733
TseI GCWGC 5 cut(s) 857, 1724, 1727, 1730, 1733
Tsp45I GTSAC 1 cut(s) 733
TspRI CASTG 6 cut(s) 478, 494, 859, 957, 1218, 1444
Van91I CCANNNNNTGG 2 cut(s) 207, 623
VpaK11BI GGWCC 5 cut(s) 7, 818, 993, 1002, 1763
XceI RCATGY 2 cut(s) 1579, 1743
XmiI GTMKAC 1 cut(s) 1429
XmnI GAANNNNTTC 1 cut(s) 1683
XspI CTAG 4 cut(s) 1038, 1553, 1688, 1865
ZrmI AGTACT 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.