Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009037

Physical Location & Seq

Genomic Coordinates Reverse (-)

16066679 .. 16069104

Gene Structure 2426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g17830.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

ATGAATGTTAAAACAAAAACACAATGTGAAAAATCGCTTTCTTTTCATTGTCTTGTACAATCAATCGATCAATCGATCAATCGTTTGTTACAAAAAAAAAAAGAAAAAGAAAAAAAACAAGAAGCTAGATGTGTATGCTCAAATTTGTATGTTGATGACTCATGTTTGGTTAGTCCTCTCCCCTCCTCACACTTTTTTCCACTCTTTCTTCTTCCGTGCCTGCAAAGTCTTCCTTGCTTCACACAAAATCCAAAAGCTCCGCAAAAGCTCACCTGCTCATCAATGGCGGACTCCATCCCCTACCGAAAACCCCACTTCCCATTCTCCGATCCGCGCCCAGAACCTCACCGAAACCCGATTCGACACGGTAAGTCCTACACCATGCACTTTCTCCTTAAAGCTCTTACCTTTGCCGTTTTCATCGTCCTTCTTCCACTTTTTCCCTCACAAGCTCCCGAATTCATCAACCACACGATCCTCACCAAGTTCTGGGAGCTCATTCACGTTATCGTCGTCGGCATTGCCGTGTCCTACGGCTTGTTCAGCAGAAGAAATAGCGCTGAAATGGGGTTTGAAAATAGCTCAAATGTAGGTAGTTCTGACTCTTACGTGCCTAGATTTTTTCCCGTTTCGTCGAGTTTCGAGGGCGAGTGTGAACACGCATTTGGGTATGGTGAGAAAAGAGAGGGTCAGAGTTGGGATTCTGGGTATTTTGTGGGTAACCCTGTGGCAGCTGTGTCTGAATCTTGTCATGAAAGCAATGTTTTTGATGCCCAATGCAAACCCAGTTCGGGGATTTGTGAAAGTGGGGGTGAAAATTCATGTGGGTATGGAGAGAAAAATGTTACCCAAGCTTGGAACTCTCAGTATTTTCAGGGTGAATCCATGGTGTTTGTTGCTCAACCAAATTATGGTCTTGATGAATGGGGAAAACCCAGATCAATTGCTGATAATCAGCCGTTGGGATTGCCCGTTCGGAGTTTGAAATCGAGGGTGAAAAGCCATGATAGTTCTGAGTTTGTTGCTAGGGGTGAGTTTAGTTTAGGTTCCAAGGGTTCTTTTAATAGCTCTGATGGGGTTGAGAATGGGGATATGGGTCATCTAAATTTGGAAGATAAGTTAAATGAAGCTGCTGCGTCACCTTCTCCGGTTAATTGGCGTTCGGGTTCTGGAAAGATGGAGAGGGGGAAAAGACTAGGTAGTAATGCTCGTCCCTCGCGTTTGAGGCTGTTCTCCGTTGATGAAACTCAATTTGAATCAATGAAAACTCGGTCTTTCCAGTCCGCATTGTCCTTTACTTCTGAGTCTTCTTCTCAAACTAGTTCTCTGTCTTCTTCCCCAAAAGAAGACTCTTCAGCGTGCTCCATGTCTTCGCAGGTGCTTAACTCAAAGTCGGAGAATGTAAAGAAAAGAAGGAGTTCCCATTCTCAAGGGTCTTCTTCTCCTTCAGGATTTGCATCATCACCACCAAAACCAATGAATGAAAAAGCTTCATTGAGTGCATTGCATTCGCGGGGCTATAGCATTGGTTCTTTCCATGAGGAGGACTTAAGGAGAAGCTCAGAAAATTACTTGAAGGATTTGAGTGGGAGAAGAAGTGGAAGTGGAAGCGGCAGGGGAAGCAGAAGGGGAAGCACAAGCGGAAGCGGAAGTGGAAGCAGAAGTGGTAGCGGAAGTGCGGAAGTGAGGAGGAGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

567

Amino Acids

61.94

Weight (kDa)

8.99

Isoelectric Point (pI)

62.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60380
fragaria_vesca	FvH4_7g09850
malus_domestica	MD02G1216600.v1.1 MD07G1103700.v1.1
prunus_persica	Prupe.2G127500_v2.0.a1
pyrus_communis	pycom02g17820 pycom02g17830 pycom07g08460 pycom07g08740 pycom07g08880 pycom07g08900
rosa_chinensis	RchiOBHm_Chr1g0347391
rosa_laevigata	RLG00000028754
rosa_multiflora	Rmu_co8226457.1_g000001 Rmu_sc0002705.1_g000039
rosa_roxburghii	Rroxscaffold_4G00307860
rosa_rugosa	Rorug01G0186300
rosa_samantha	Rh1AG204000 Rh1BG169700 Rh1CG189100 Rh1DG200100
rosa_wichuraiana	Rw1G017110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	281, 1366
Acc36I	ACCTGC	2 cut(s)	281, 1366
AccB7I	CCANNNNNTGG	2 cut(s)	489, 911
AccII	CGCG	3 cut(s)	334, 1219, 1513
AclWI	GGATC	2 cut(s)	323, 469
AcsI	RAATTY	4 cut(s)	142, 458, 817, 1105
AcuI	CTGAAG	2 cut(s)	1338, 1431
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	57
AfeI	AGCGCT	1 cut(s)	559
AfiI	CCNNNNNNNGG	6 cut(s)	489, 791, 792, 855, 911, 1543
AflII	CTTAAG	1 cut(s)	1549
AgsI	TTSAA	4 cut(s)	575, 985, 1256, 1576
AhlI	ACTAGT	1 cut(s)	1319
AjuI	GAANNNNNNNTTGG	2 cut(s)	648, 680
AloI	GAACNNNNNNTCC	2 cut(s)	957, 989
Alw21I	GWGCWC	2 cut(s)	498, 1364
AlwI	GGATC	2 cut(s)	323, 469
Aor51HI	AGCGCT	1 cut(s)	559
ApeKI	GCWGC	3 cut(s)	731, 1130, 1133
ApoI	RAATTY	4 cut(s)	142, 458, 817, 1105
Asp700I	GAANNNNTTC	1 cut(s)	1417
AspLEI	GCGC	2 cut(s)	336, 560
BanII	GRGCYC	1 cut(s)	498
BbsI	GAAGAC	6 cut(s)	221, 1299, 1323, 1353, 1362, 1428
Bbv12I	GWGCWC	2 cut(s)	498, 1364
BbvI	GCAGC	3 cut(s)	743, 1117, 1120
BccI	CCATC	3 cut(s)	302, 1067, 1171
BceAI	ACGGC	4 cut(s)	398, 509, 550, 943
BcgI	CGANNNNNNTGC	2 cut(s)	1491, 1525
BcuI	ACTAGT	1 cut(s)	1319
BfaI	CTAG	5 cut(s)	126, 615, 1026, 1196, 1320
BfmI	CTRYAG	1 cut(s)	1519
BfoI	RGCGCY	1 cut(s)	561
BfrI	CTTAAG	1 cut(s)	1549
BfuAI	ACCTGC	2 cut(s)	281, 1366
BisI	GCNGC	4 cut(s)	732, 1131, 1134, 1612
BlsI	GCNGC	4 cut(s)	733, 1132, 1135, 1613
BmiI	GGNNCC	1 cut(s)	1048
BmrI	ACTGGG	1 cut(s)	780
BmsI	GCATC	2 cut(s)	760, 1466
BmuI	ACTGGG	1 cut(s)	780
BpiI	GAAGAC	6 cut(s)	221, 1299, 1323, 1353, 1362, 1428
BpuEI	CTTGAG	1 cut(s)	1413
Bsa29I	ATCGAT	2 cut(s)	66, 74
BsaAI	YACGTR	1 cut(s)	610
BsaBI	GATNNNNATC	1 cut(s)	1456
BsaJI	CCNNGG	2 cut(s)	885, 1050
BsaWI	WCCGGW	1 cut(s)	1147
BsaXI	ACNNNNNCTCC	2 cut(s)	1582, 1612
Bsc4I	CCNNNNNNNGG	6 cut(s)	489, 791, 792, 855, 911, 1543
Bse1I	ACTGG	2 cut(s)	786, 1279
Bse3DI	GCAATG	3 cut(s)	519, 766, 1502
Bse8I	GATNNNNATC	1 cut(s)	1456
BseCI	ATCGAT	2 cut(s)	66, 74
BseDI	CCNNGG	2 cut(s)	885, 1050
BseGI	GGATG	1 cut(s)	294
BseJI	GATNNNNATC	1 cut(s)	1456
BseLI	CCNNNNNNNGG	6 cut(s)	489, 791, 792, 855, 911, 1543
BseMI	GCAATG	3 cut(s)	519, 766, 1502
BseMII	CTCAG	4 cut(s)	878, 1005, 1293, 1575
BseNI	ACTGG	2 cut(s)	786, 1279
BseRI	GAGGAG	2 cut(s)	175, 1556
BseXI	GCAGC	3 cut(s)	743, 1117, 1120
Bsh1236I	CGCG	3 cut(s)	334, 1219, 1513
BshVI	ATCGAT	2 cut(s)	66, 74
BsiHKAI	GWGCWC	2 cut(s)	498, 1364
BsiSI	CCGG	1 cut(s)	1148
BslFI	GGGAC	1 cut(s)	1197
BslI	CCNNNNNNNGG	6 cut(s)	489, 791, 792, 855, 911, 1543
BsmFI	GGGAC	1 cut(s)	1197
BsmI	GAATGC	1 cut(s)	1507
Bsp1286I	GDGCHC	2 cut(s)	498, 1364
Bsp1407I	TGTACA	1 cut(s)	55
Bsp143I	GATC	5 cut(s)	67, 75, 328, 474, 938
Bsp19I	CCATGG	1 cut(s)	885
BspCNI	CTCAG	4 cut(s)	877, 1006, 1294, 1574
BspDI	ATCGAT	2 cut(s)	66, 74
BspFNI	CGCG	3 cut(s)	334, 1219, 1513
BspHI	TCATGA	1 cut(s)	751
BspLI	GGNNCC	1 cut(s)	1048
BspMI	ACCTGC	2 cut(s)	281, 1366
BspPI	GGATC	2 cut(s)	323, 469
BspTI	CTTAAG	1 cut(s)	1549
BsrDI	GCAATG	3 cut(s)	519, 766, 1502
BsrGI	TGTACA	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	786, 1279
BssECI	CCNNGG	2 cut(s)	885, 1050
BssMI	GATC	5 cut(s)	67, 75, 328, 474, 938
BssT1I	CCWWGG	2 cut(s)	885, 1050
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	1 cut(s)	1357
BstAFI	CTTAAG	1 cut(s)	1549
BstAUI	TGTACA	1 cut(s)	55
BstBAI	YACGTR	1 cut(s)	610
BstC8I	GCNNGC	2 cut(s)	221, 1360
BstDEI	CTNAG	4 cut(s)	864, 1014, 1302, 1561
BstDSI	CCRYGG	1 cut(s)	885
BstEII	GGTNACC	1 cut(s)	719
BstF5I	GGATG	1 cut(s)	294
BstFNI	CGCG	3 cut(s)	334, 1219, 1513
BstH2I	RGCGCY	1 cut(s)	561
BstHHI	GCGC	2 cut(s)	336, 560
BstKTI	GATC	5 cut(s)	70, 78, 331, 477, 941
BstMBI	GATC	5 cut(s)	67, 75, 328, 474, 938
BstMWI	GCNNNNNNNGC	3 cut(s)	543, 1225, 1620
BstPI	GGTNACC	1 cut(s)	719
BstSFI	CTRYAG	1 cut(s)	1519
BstUI	CGCG	3 cut(s)	334, 1219, 1513
BstV1I	GCAGC	3 cut(s)	743, 1117, 1120
BstV2I	GAAGAC	6 cut(s)	221, 1299, 1323, 1353, 1362, 1428
Bsu15I	ATCGAT	2 cut(s)	66, 74
BsuTUI	ATCGAT	2 cut(s)	66, 74
BtgI	CCRYGG	1 cut(s)	885
BtsCI	GGATG	1 cut(s)	294
BveI	ACCTGC	2 cut(s)	281, 1366
Cac8I	GCNNGC	2 cut(s)	221, 1360
CciI	TCATGA	1 cut(s)	751
CfoI	GCGC	2 cut(s)	336, 560
ClaI	ATCGAT	2 cut(s)	66, 74
CseI	GACGC	1 cut(s)	1125
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	8 cut(s)	162, 382, 752, 822, 886, 1004, 1366, 1538
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	4 cut(s)	864, 1014, 1302, 1561
DpnI	GATC	5 cut(s)	69, 77, 330, 476, 940
DpnII	GATC	5 cut(s)	67, 75, 328, 474, 938
DraIII	CACNNNGTG	1 cut(s)	26
Eam1104I	CTCTTC	1 cut(s)	1357
EarI	CTCTTC	1 cut(s)	1357
EciI	GGCGGA	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	496
Eco130I	CCWWGG	2 cut(s)	885, 1050
Eco24I	GRGCYC	1 cut(s)	498
Eco47III	AGCGCT	1 cut(s)	559
Eco53kI	GAGCTC	1 cut(s)	496
Eco57I	CTGAAG	2 cut(s)	1338, 1431
Eco91I	GGTNACC	1 cut(s)	719
EcoICRI	GAGCTC	1 cut(s)	496
EcoO65I	GGTNACC	1 cut(s)	719
EcoRI	GAATTC	1 cut(s)	458
EcoT14I	CCWWGG	2 cut(s)	885, 1050
EcoT38I	GRGCYC	1 cut(s)	498
ErhI	CCWWGG	2 cut(s)	885, 1050
FaeI	CATG	8 cut(s)	165, 385, 755, 825, 889, 1007, 1369, 1541
FalI	AAGNNNNNCTT	2 cut(s)	217, 249
FaqI	GGGAC	1 cut(s)	1197
FatI	CATG	8 cut(s)	161, 381, 751, 821, 885, 1003, 1365, 1537
FauI	CCCGC	1 cut(s)	1506
Fnu4HI	GCNGC	4 cut(s)	732, 1131, 1134, 1612
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	4 cut(s)	732, 1131, 1134, 1612
FspBI	CTAG	5 cut(s)	126, 615, 1026, 1196, 1320
GlaI	GCGC	2 cut(s)	335, 559
GluI	GCNGC	4 cut(s)	732, 1131, 1134, 1612
HaeII	RGCGCY	1 cut(s)	561
HapII	CCGG	1 cut(s)	1148
HgaI	GACGC	1 cut(s)	1125
HhaI	GCGC	2 cut(s)	336, 560
Hin1II	CATG	8 cut(s)	165, 385, 755, 825, 889, 1007, 1369, 1541
Hin6I	GCGC	2 cut(s)	334, 558
HinP1I	GCGC	2 cut(s)	334, 558
HindIII	AAGCTT	2 cut(s)	852, 1488
HpaII	CCGG	1 cut(s)	1148
Hpy166II	GTNNAC	1 cut(s)	656
Hpy188III	TCNNGA	5 cut(s)	455, 752, 917, 1170, 1449
Hpy8I	GTNNAC	1 cut(s)	656
Hpy99I	CGWCG	3 cut(s)	515, 518, 637
HpyAV	CCTTC	6 cut(s)	437, 1152, 1407, 1455, 1570, 1620
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4IV	ACGT	2 cut(s)	504, 609
HpyCH4V	TGCA	6 cut(s)	223, 385, 780, 1457, 1502, 1507
HpyF10VI	GCNNNNNNNGC	3 cut(s)	543, 1225, 1620
HpyF3I	CTNAG	4 cut(s)	864, 1014, 1302, 1561
HpySE526I	ACGT	2 cut(s)	504, 609
Hsp92II	CATG	8 cut(s)	165, 385, 755, 825, 889, 1007, 1369, 1541
HspAI	GCGC	2 cut(s)	334, 558
Kzo9I	GATC	5 cut(s)	67, 75, 328, 474, 938
LmnI	GCTCC	5 cut(s)	262, 457, 493, 1367, 1692
Lsp1109I	GCAGC	3 cut(s)	743, 1117, 1120
LweI	GCATC	2 cut(s)	760, 1466
MaeI	CTAG	5 cut(s)	126, 615, 1026, 1196, 1320
MaeII	ACGT	2 cut(s)	504, 609
MaeIII	GTNAC	4 cut(s)	87, 719, 844, 1137
MalI	GATC	5 cut(s)	69, 77, 330, 476, 940
MboI	GATC	5 cut(s)	67, 75, 328, 474, 938
MfeI	CAATTG	2 cut(s)	942, 1696
MhlI	GDGCHC	2 cut(s)	498, 1364
MlyI	GAGTC	5 cut(s)	152, 284, 596, 1313, 1343
MmeI	TCCRAC	1 cut(s)	1374
MroXI	GAANNNNTTC	1 cut(s)	1417
MseI	TTAA	7 cut(s)	9, 396, 1062, 1121, 1152, 1383, 1550
MslI	CAYNNNNRTG	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	734
MspCI	CTTAAG	1 cut(s)	1549
MspI	CCGG	1 cut(s)	1148
MunI	CAATTG	2 cut(s)	942, 1696
Mva1269I	GAATGC	1 cut(s)	1507
MvnI	CGCG	3 cut(s)	334, 1219, 1513
MwoI	GCNNNNNNNGC	3 cut(s)	543, 1225, 1620
NcoI	CCATGG	1 cut(s)	885
NdeII	GATC	5 cut(s)	67, 75, 328, 474, 938
NlaIII	CATG	8 cut(s)	165, 385, 755, 825, 889, 1007, 1369, 1541
NlaIV	GGNNCC	1 cut(s)	1048
NmuCI	GTSAC	1 cut(s)	1137
PagI	TCATGA	1 cut(s)	751
PaqCI	CACCTGC	2 cut(s)	281, 1366
PcsI	WCGNNNNNNNCGW	3 cut(s)	510, 522, 1216
PctI	GAATGC	1 cut(s)	1507
PdmI	GAANNNNTTC	1 cut(s)	1417
PfeI	GAWTC	5 cut(s)	358, 701, 743, 881, 1256
PflMI	CCANNNNNTGG	2 cut(s)	489, 911
PkrI	GCNGC	4 cut(s)	733, 1132, 1135, 1613
PleI	GAGTC	5 cut(s)	152, 284, 596, 1312, 1343
PpsI	GAGTC	5 cut(s)	152, 284, 596, 1312, 1343
Ppu21I	YACGTR	1 cut(s)	610
Psp124BI	GAGCTC	1 cut(s)	498
PspEI	GGTNACC	1 cut(s)	719
PspN4I	GGNNCC	1 cut(s)	1048
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	524
SacI	GAGCTC	1 cut(s)	498
SaqAI	TTAA	7 cut(s)	9, 396, 1062, 1121, 1152, 1383, 1550
SatI	GCNGC	4 cut(s)	732, 1131, 1134, 1612
Sau3AI	GATC	5 cut(s)	67, 75, 328, 474, 938
SchI	GAGTC	5 cut(s)	152, 284, 596, 1313, 1343
SduI	GDGCHC	2 cut(s)	498, 1364
SfaNI	GCATC	2 cut(s)	760, 1466
SfcI	CTRYAG	1 cut(s)	1519
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	2 cut(s)	1428, 1549
SmoI	CTYRAG	2 cut(s)	1428, 1549
SpeI	ACTAGT	1 cut(s)	1319
SspMI	CTAG	5 cut(s)	126, 615, 1026, 1196, 1320
SstI	GAGCTC	1 cut(s)	498
StyI	CCWWGG	2 cut(s)	885, 1050
TaaI	ACNGT	1 cut(s)	368
TaiI	ACGT	2 cut(s)	507, 612
TaqI	TCGA	6 cut(s)	66, 74, 361, 635, 642, 989
TaqII	GACCGA	1 cut(s)	1260
TatI	WGTACW	1 cut(s)	55
TauI	GCSGC	1 cut(s)	1614
TfiI	GAWTC	5 cut(s)	358, 701, 743, 881, 1256
Tru1I	TTAA	7 cut(s)	9, 396, 1062, 1121, 1152, 1383, 1550
Tru9I	TTAA	7 cut(s)	9, 396, 1062, 1121, 1152, 1383, 1550
TseFI	GTSAC	1 cut(s)	1137
TseI	GCWGC	3 cut(s)	731, 1130, 1133
Tsp45I	GTSAC	1 cut(s)	1137
TspGWI	ACGGA	2 cut(s)	204, 1225
Van91I	CCANNNNNTGG	2 cut(s)	489, 911
Vha464I	CTTAAG	1 cut(s)	1549
XapI	RAATTY	4 cut(s)	142, 458, 817, 1105
XmnI	GAANNNNTTC	1 cut(s)	1417
XspI	CTAG	5 cut(s)	126, 615, 1026, 1196, 1320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.