MD07G1103700.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0009037
Physical Location & Seq
Forward (+)
11771169 .. 11773121
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1103700.v1.1.491

Sequence Viewer

Length: 1953 bp
ATGGCGGACTCCATCCCCTGCAAAAAACCCCACTTCCCATTCTCCGATCCAAACCCAGAAGCTCACCGAAACCCGATTCGACACGGTAAGTCCTACACCATGCACTTTCTCCTTAAAGCTCTAATCTTTGCCGTTTTCATCGTTGTTCTTCCACTTTTCCCCTCACAAGCTCCCGAATTTATCAACCACACGATCCTCACCAAGTTCTGGGAGCTCATTCACGTTATCTTCGTCGGCATTGCCGTGTCCTACGGCTTGTTCAGCAGAAGAAATAGTGCTGAAATGGGGTTTGAGAATAGCTCAAATGTAGGTACTTCTGAGTCTTATATGCCTACAATATTTCCCGTTTCGTCGAATTTCGACAGCGGGTATGAACACCCATGTGGGTATGGTGAGAAAAGCGAAGGTGAGAGTTGGAATTCTGGGTATTTTGTGGGTAACCCTGTTGCTGCTGTGGCTCAATCTTGTCATGAAAGCAATGTTTTTTATGCCCAATGCAAACCCAGTTTGGGGATTTGTGAAAGTGGGTGTGAAAATTCATGTGGGTATAAAGAGAAAAATGTTACTCAAGCTAGGAATTCTCAGTATTTTCAGGGTGAATCAATGGTGTTTGTGGCTCAACCAAATTATGGTCTTGATGAATGGGGACAACCCAGATCAATGGTTGATAATCAGCCGTTAGGATTGCCGGTTCGGAGTTTGAAACCGAGGGTGAAAAACCAGGATAGTTTTGAGTTTGTTGCTGGGAGTGAGTTCAGTTTAGGTTCTAAGGGCTCTTTTAATAGCTCTGATAGGATTAGTAATGGGGATTTTGGTGATTTGGGTGCTATAAATTTAAAACAGAAGTTCAATGAAGCTGCCGCATCACCTTCCCCGGTTCATTGGCGTTCGCGTTCTGCAAGGATGGAAAGGGGGAAAAGAGTAGGTAGTAATGCTCGTCCTTTGCGTTTGAGGCCACTCTCAGTTGATGAAACTCAGTTTGAATCAATGAAAACTCGGTCTTTCCAGTCCACATTGTCCTTTACTTCTGAGTCTTCTTCTCAAACTAGTTCTATGTCTTCTTCCCCAAAAGAAGACTCTTTCACGCACTCCATGTCTTCGGAGGTGCTTAACTCGAAGGTGGAGAATGTGAAGAAAAGAAAGAGTCCTCATTCTCAAGGGTCGTCTTCTCCTTCAGGATTTGCATCATCACCTCCAAAACCAATGAACGAAAAAGCTTCAGTGAGTGCGTTGCATTTGCGGGGCTACAGCATTGGTTCTTTCCATGAGGAGGACTTGAGGAGAAGCTCCGAAAATTATTTGAAGGATTTGAGTGGGAGCGGAAGCAGAAGTGGAAGTGGAAACGGAAGCGGAAGTGAGGAGGAGCAATTGGGAAGCAAAGAGTTGGGGCAAGGTTTTTTGGGATTGAATACTAAGCCTGCAAGCCTCACTAAATCTGCATCAAGGGGAAAATCGGTTAGAACGATCAGAGGTAGTAAATTTGCCACTCATGAAAAAGTTGAGAAGATGTGTGACATTGGTGAGTTTATATCTATGAGAAAAGATATGATGCAAAATGGAGTAACCAACATGAAAGATCTTGGAAATGGAAAGAGTAAGCATGATCTTGGCAATCCTTTTCACATGCCGAAGCTAGAATTTCCGAAACATGAGAAGAAGGAGATGCGAGAAGTTCGTGGCAATGCAGCTGCGGAGTCTGAAGAAGAAGAGCCGGAAAGTGAGGCAGAAAACTTTCAATTGAGCTCGGATGATGAACGTGAAGATGATGCTCTTGCCGCCGCTGCTGCGGCTACAAGTAGCAACTCTCTGAATGTTGGAGGAGCAGACTCAGAGGTTGATAAGAAGGCGGGCGAGTTCATAGCGAAATTTAGAGAGCAGATTAGGCTTCAAAAAGTGGCATCAAAGGACAGATCAAGAGGGCAACACATCTCTGCTAATTCCTTCGGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

651

Amino Acids

71.32

Weight (kDa)

7.65

Isoelectric Point (pI)

49.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 610 - 637 3.9e-09 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 207, 629
AccBSI CCGCTC 1 cut(s) 1320
AccII CGCG 1 cut(s) 892
AclWI GGATC 2 cut(s) 41, 187
AcsI RAATTY 9 cut(s) 176, 355, 418, 535, 577, 832, 1478, 1637, 1865
AcuI CTGAAG 3 cut(s) 1158, 1203, 1719
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 5 cut(s) 207, 509, 510, 629, 1270
AgsI TTSAA 7 cut(s) 703, 850, 983, 1303, 1408, 1736, 1889
AhlI ACTAGT 1 cut(s) 1046
AjnI CCWGG 1 cut(s) 720
AleI CACNNNNGTG 1 cut(s) 381
AloI GAACNNNNNNTCC 2 cut(s) 675, 707
Alw21I GWGCWC 2 cut(s) 216, 1745
AlwI GGATC 2 cut(s) 41, 187
AoxI GGCC 1 cut(s) 953
ApeKI GCWGC 6 cut(s) 449, 857, 1685, 1688, 1781, 1784
ApoI RAATTY 9 cut(s) 176, 355, 418, 535, 577, 832, 1478, 1637, 1865
Asp700I GAANNNNTTC 1 cut(s) 1731
AsuC2I CCSGG 1 cut(s) 875
BanII GRGCYC 3 cut(s) 216, 776, 1745
BbsI GAAGAC 5 cut(s) 1026, 1050, 1080, 1089, 1158
Bbv12I GWGCWC 2 cut(s) 216, 1745
BbvI GCAGC 6 cut(s) 436, 844, 1675, 1697, 1768, 1771
BccI CCATC 2 cut(s) 20, 898
BceAI ACGGC 4 cut(s) 116, 227, 268, 661
BciT130I CCWGG 1 cut(s) 722
BcnI CCSGG 1 cut(s) 875
BcuI ACTAGT 1 cut(s) 1046
BfaI CTAG 3 cut(s) 573, 1047, 1634
BfmI CTRYAG 1 cut(s) 1246
BglII AGATCT 1 cut(s) 1576
Bme1390I CCNGG 2 cut(s) 722, 875
BmrFI CCNGG 2 cut(s) 722, 875
BmrI ACTGGG 1 cut(s) 498
BmsI GCATC 7 cut(s) 872, 1193, 1448, 1539, 1653, 1756, 1907
BmuI ACTGGG 1 cut(s) 498
BpiI GAAGAC 5 cut(s) 1026, 1050, 1080, 1089, 1158
BplI GAGNNNNNCTC 2 cut(s) 284, 316
BpuEI CTTGAG 3 cut(s) 552, 1140, 1297
BpuMI CCSGG 1 cut(s) 875
BsaBI GATNNNNATC 1 cut(s) 1183
BsaJI CCNNGG 2 cut(s) 707, 873
Bsc4I CCNNNNNNNGG 5 cut(s) 207, 509, 510, 629, 1270
Bse118I RCCGGY 1 cut(s) 688
Bse1I ACTGG 2 cut(s) 504, 1006
Bse3DI GCAATG 3 cut(s) 237, 484, 1687
Bse8I GATNNNNATC 1 cut(s) 1183
BseBI CCWGG 1 cut(s) 722
BseDI CCNNGG 2 cut(s) 707, 873
BseGI GGATG 3 cut(s) 12, 909, 1753
BseJI GATNNNNATC 1 cut(s) 1183
BseLI CCNNNNNNNGG 5 cut(s) 207, 509, 510, 629, 1270
BseMI GCAATG 3 cut(s) 237, 484, 1687
BseMII CTCAG 6 cut(s) 309, 596, 975, 989, 1020, 1842
BseNI ACTGG 2 cut(s) 504, 1006
BseRI GAGGAG 5 cut(s) 1283, 1294, 1373, 1376, 1833
BseXI GCAGC 6 cut(s) 436, 844, 1675, 1697, 1768, 1771
BseYI CCCAGC 1 cut(s) 743
Bsh1236I CGCG 1 cut(s) 892
BshFI GGCC 1 cut(s) 955
BsiHKAI GWGCWC 2 cut(s) 216, 1745
BsiSI CCGG 3 cut(s) 689, 875, 1712
BslFI GGGAC 1 cut(s) 660
BslI CCNNNNNNNGG 5 cut(s) 207, 509, 510, 629, 1270
BsmFI GGGAC 1 cut(s) 660
BsnI GGCC 1 cut(s) 955
Bsp1286I GDGCHC 3 cut(s) 216, 776, 1745
Bsp143I GATC 7 cut(s) 46, 192, 656, 1464, 1576, 1603, 1910
BspANI GGCC 1 cut(s) 955
BspCNI CTCAG 6 cut(s) 310, 595, 974, 988, 1021, 1841
BspFNI CGCG 1 cut(s) 892
BspHI TCATGA 2 cut(s) 469, 1489
BspPI GGATC 2 cut(s) 41, 187
BspQI GCTCTTC 1 cut(s) 1701
BsrBI CCGCTC 1 cut(s) 1320
BsrDI GCAATG 3 cut(s) 237, 484, 1687
BsrFI RCCGGY 1 cut(s) 688
BsrI ACTGG 2 cut(s) 504, 1006
BssAI RCCGGY 1 cut(s) 688
BssECI CCNNGG 2 cut(s) 707, 873
BssMI GATC 7 cut(s) 46, 192, 656, 1464, 1576, 1603, 1910
Bst2UI CCWGG 1 cut(s) 722
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 1 cut(s) 1701
BstC8I GCNNGC 3 cut(s) 1419, 1423, 1849
BstDEI CTNAG 8 cut(s) 318, 582, 768, 961, 975, 1029, 1413, 1828
BstEII GGTNACC 1 cut(s) 437
BstF5I GGATG 3 cut(s) 12, 909, 1753
BstFNI CGCG 1 cut(s) 892
BstKTI GATC 7 cut(s) 49, 195, 659, 1467, 1579, 1606, 1913
BstMBI GATC 7 cut(s) 46, 192, 656, 1464, 1576, 1603, 1910
BstMWI GCNNNNNNNGC 8 cut(s) 261, 455, 952, 1775, 1781, 1784, 1787, 1882
BstNI CCWGG 1 cut(s) 722
BstNSI RCATGY 1 cut(s) 1627
BstPI GGTNACC 1 cut(s) 437
BstSCI CCNGG 2 cut(s) 720, 873
BstSFI CTRYAG 1 cut(s) 1246
BstUI CGCG 1 cut(s) 892
BstV1I GCAGC 6 cut(s) 436, 844, 1675, 1697, 1768, 1771
BstV2I GAAGAC 5 cut(s) 1026, 1050, 1080, 1089, 1158
BstX2I RGATCY 1 cut(s) 1576
BstXI CCANNNNNNTGG 1 cut(s) 661
BstYI RGATCY 1 cut(s) 1576
BsuRI GGCC 1 cut(s) 955
BtsCI GGATG 3 cut(s) 12, 909, 1753
BtsIMutI CAGTG 1 cut(s) 1227
Cac8I GCNNGC 3 cut(s) 1419, 1423, 1849
CciI TCATGA 2 cut(s) 469, 1489
Cfr10I RCCGGY 1 cut(s) 688
Csp6I GTAC 1 cut(s) 312
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 8 cut(s) 318, 582, 768, 961, 975, 1029, 1413, 1828
DpnI GATC 7 cut(s) 48, 194, 658, 1466, 1578, 1605, 1912
DpnII GATC 7 cut(s) 46, 192, 656, 1464, 1576, 1603, 1910
DraI TTTAAA 1 cut(s) 837
Eam1104I CTCTTC 1 cut(s) 1701
EarI CTCTTC 1 cut(s) 1701
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 2 cut(s) 214, 1743
Eco24I GRGCYC 3 cut(s) 216, 776, 1745
Eco53kI GAGCTC 2 cut(s) 214, 1743
Eco57I CTGAAG 3 cut(s) 1158, 1203, 1719
Eco91I GGTNACC 1 cut(s) 437
EcoICRI GAGCTC 2 cut(s) 214, 1743
EcoO65I GGTNACC 1 cut(s) 437
EcoRI GAATTC 2 cut(s) 418, 577
EcoRII CCWGG 1 cut(s) 720
EcoT38I GRGCYC 3 cut(s) 216, 776, 1745
FaqI GGGAC 1 cut(s) 660
FauI CCCGC 3 cut(s) 359, 1233, 1840
FokI GGATG 2 cut(s) 916, 1760
FriOI GRGCYC 3 cut(s) 216, 776, 1745
FspBI CTAG 3 cut(s) 573, 1047, 1634
GsaI CCCAGC 1 cut(s) 747
HaeIII GGCC 1 cut(s) 955
HapII CCGG 3 cut(s) 689, 875, 1712
HindIII AAGCTT 1 cut(s) 1215
HpaII CCGG 3 cut(s) 689, 875, 1712
Hpy166II GTNNAC 1 cut(s) 1011
Hpy188III TCNNGA 6 cut(s) 173, 470, 635, 1176, 1490, 1914
Hpy8I GTNNAC 1 cut(s) 1011
Hpy99I CGWCG 2 cut(s) 236, 355
HpyAV CCTTC 8 cut(s) 398, 879, 1111, 1182, 1297, 1651, 1837, 1951
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4IV ACGT 2 cut(s) 222, 1756
HpyF10VI GCNNNNNNNGC 8 cut(s) 261, 455, 952, 1775, 1781, 1784, 1787, 1882
HpyF3I CTNAG 8 cut(s) 318, 582, 768, 961, 975, 1029, 1413, 1828
HpySE526I ACGT 2 cut(s) 222, 1756
Kzo9I GATC 7 cut(s) 46, 192, 656, 1464, 1576, 1603, 1910
LguI GCTCTTC 1 cut(s) 1701
LmnI GCTCC 6 cut(s) 175, 211, 1292, 1317, 1363, 1820
Lsp1109I GCAGC 6 cut(s) 436, 844, 1675, 1697, 1768, 1771
LweI GCATC 7 cut(s) 872, 1193, 1448, 1539, 1653, 1756, 1907
MaeI CTAG 3 cut(s) 573, 1047, 1634
MaeII ACGT 2 cut(s) 222, 1756
MaeIII GTNAC 4 cut(s) 437, 562, 1511, 1561
MalI GATC 7 cut(s) 48, 194, 658, 1466, 1578, 1605, 1912
MbiI CCGCTC 1 cut(s) 1320
MboI GATC 7 cut(s) 46, 192, 656, 1464, 1576, 1603, 1910
MfeI CAATTG 2 cut(s) 1367, 1736
MflI RGATCY 1 cut(s) 1576
MhlI GDGCHC 3 cut(s) 216, 776, 1745
MlyI GAGTC 7 cut(s) 2, 329, 1040, 1070, 1153, 1703, 1820
MmeI TCCRAC 2 cut(s) 395, 1795
MroXI GAANNNNTTC 1 cut(s) 1731
MseI TTAA 4 cut(s) 114, 780, 836, 1110
MslI CAYNNNNRTG 2 cut(s) 242, 381
MspA1I CMGCKG 3 cut(s) 366, 1688, 1781
MspI CCGG 3 cut(s) 689, 875, 1712
MspR9I CCNGG 2 cut(s) 722, 875
MunI CAATTG 2 cut(s) 1367, 1736
MvaI CCWGG 1 cut(s) 722
MvnI CGCG 1 cut(s) 892
MwoI GCNNNNNNNGC 8 cut(s) 261, 455, 952, 1775, 1781, 1784, 1787, 1882
NciI CCSGG 1 cut(s) 875
NdeII GATC 7 cut(s) 46, 192, 656, 1464, 1576, 1603, 1910
NmuCI GTSAC 1 cut(s) 1511
NspI RCATGY 1 cut(s) 1627
OliI CACNNNNGTG 1 cut(s) 381
PagI TCATGA 2 cut(s) 469, 1489
PciSI GCTCTTC 1 cut(s) 1701
PcsI WCGNNNNNNNCGW 4 cut(s) 228, 240, 943, 1460
PdmI GAANNNNTTC 1 cut(s) 1731
PfeI GAWTC 3 cut(s) 76, 599, 983
PflMI CCANNNNNTGG 2 cut(s) 207, 629
PleI GAGTC 7 cut(s) 2, 328, 1039, 1070, 1152, 1702, 1820
PpsI GAGTC 7 cut(s) 2, 328, 1039, 1070, 1152, 1702, 1820
Psp124BI GAGCTC 2 cut(s) 216, 1745
Psp6I CCWGG 1 cut(s) 720
PspEI GGTNACC 1 cut(s) 437
PspFI CCCAGC 1 cut(s) 743
PspGI CCWGG 1 cut(s) 720
PsuI RGATCY 1 cut(s) 1576
PvuII CAGCTG 1 cut(s) 1688
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
RseI CAYNNNNRTG 2 cut(s) 242, 381
SacI GAGCTC 2 cut(s) 216, 1745
SapI GCTCTTC 1 cut(s) 1701
SaqAI TTAA 4 cut(s) 114, 780, 836, 1110
Sau3AI GATC 7 cut(s) 46, 192, 656, 1464, 1576, 1603, 1910
SchI GAGTC 7 cut(s) 2, 329, 1040, 1070, 1153, 1703, 1820
ScrFI CCNGG 2 cut(s) 722, 875
SduI GDGCHC 3 cut(s) 216, 776, 1745
SfaNI GCATC 7 cut(s) 872, 1193, 1448, 1539, 1653, 1756, 1907
SfcI CTRYAG 1 cut(s) 1246
SmiMI CAYNNNNRTG 2 cut(s) 242, 381
SmlI CTYRAG 3 cut(s) 567, 1155, 1276
SmoI CTYRAG 3 cut(s) 567, 1155, 1276
SpeI ACTAGT 1 cut(s) 1046
SspI AATATT 1 cut(s) 339
SspMI CTAG 3 cut(s) 573, 1047, 1634
SstI GAGCTC 2 cut(s) 216, 1745
StyD4I CCNGG 2 cut(s) 720, 873
TaaI ACNGT 1 cut(s) 86
TaiI ACGT 2 cut(s) 225, 1759
TaqI TCGA 4 cut(s) 79, 353, 360, 1115
TaqII GACCGA 1 cut(s) 987
TauI GCSGC 4 cut(s) 863, 1778, 1781, 1790
TfiI GAWTC 3 cut(s) 76, 599, 983
Tru1I TTAA 4 cut(s) 114, 780, 836, 1110
Tru9I TTAA 4 cut(s) 114, 780, 836, 1110
TscAI CASTG 1 cut(s) 1227
TseFI GTSAC 1 cut(s) 1511
TseI GCWGC 6 cut(s) 449, 857, 1685, 1688, 1781, 1784
Tsp45I GTSAC 1 cut(s) 1511
TspGWI ACGGA 1 cut(s) 1359
TspRI CASTG 1 cut(s) 1227
Van91I CCANNNNNTGG 2 cut(s) 207, 629
XapI RAATTY 9 cut(s) 176, 355, 418, 535, 577, 832, 1478, 1637, 1865
XceI RCATGY 1 cut(s) 1627
XmnI GAANNNNTTC 1 cut(s) 1731
XspI CTAG 3 cut(s) 573, 1047, 1634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.