RLG00000028754

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0009037
Physical Location & Seq
Reverse (-)
27450664 .. 27452843
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028754

Sequence Viewer

Length: 1929 bp
ATGGAGGATTCAGGCCCTTTCAGAAAACCCCATTTCCCAAATCCAGGGATGAACAACTTGTCAGCAGTTCAGTTTCAACAGAACCCCATTACACAAGGTAAGTCTTACCTGCAATTTCTGTTTAAATGTATCTTCTTTGTGGTTTTGGTCGTGGCTCTGCCGTTGTTTCCTTCACAAGCTCCCGAATTTATCAACGATACGATACTCAACAAGTTCTGGGAGCTTATTCATCTTCTTTTCATTGGAATTGCTGTGTCTTATGGCTTGTTTAGCAGAAGAAATGTTGAGATGGGGATTGAAAACCAGTCAAATGTTGAAAATGTAGAGTCTTATATGCCTAGGATGTTTGATGGGTATGAAAATCCAGGTGGGTCTGGTGAGAAGAAAGTTCTTGAGAGTTGTTGGAGTTCTCAGAATTTTGTAGGTAACCATAAAAGTACTGTTTATTTTGATGCCCAATGCAAACCCAGATTGCCAAATTATGGAGATGGTCTTGAAAAATCTTGTGGTTTTAAAAATAAGAATTTTGCTCAAGCTTGGAATTCTCAGTACTTTCAGGGTGAATCTATGGTTTTTGTAGCTCAACCAGATTATGCTGTGGATGAGTTTGTGAAACCCAAATCAATAGTTGATGATGAGCCATTAGGATTGCCTGTTCGGAGTTTGAAATCGAGGGTTAAAAACCAGGAGAAGCCTGAGTTTGTTACTAGGAGTGAGTCTGGTTTTGGTTCAAAGGTTTCATCTAATAGTTTTGACTGGAGTAGGAGTAAGAACTTTGGTGATTTGGCTCCTATAAATTTACTAGAGAAATTCAATCAAGCTATGGCATCACCTTCCCCAGTTCTTCAGCGTTCGAGTTCTCGAAAGATGGAAAGGGGAAAAAGAGTAGGTAGTGCCCCTCGTCCTTCACATTTTAGGCCACTATCAGTTGATGAAGCTCAATTTGAGTTTCTTAAAACTCGGTCCTTCCGGTCCACATTGTCTTTCTCATCCGAAACTAGCTCCAAATCTTCTTCACCTGAAAAGGAGTACTCTTCTGTTAACTCTACAGCTTCTGAGGTACCGAACTCAGAAACTGTTCATTTGGGGAAAAGAAAGAAGAGCTCCCGAGCGTCTTCTCCTTCAGGTTTACCATCAGAACCAAATCCAATGATTGAAAAAGTTTCAATGGGTGGATTGCATTCCAGGGGCTATAGTGTAGGTTCTTTCTTTGAGGAGGATTTGAGGAAAAGCTCAGAGAATGACTTGAAGAAAGAATTGAATGGGAGTCGAATTACTGGGGATCAATATGATTCAGGTAAGAAAGAGTTGGGGATGGGGTCTTTCGGATCAGAGAAGAAGCCTGCAAGCCTCAGCAAATCTACATCAAGAGGAAAATCAGTCAGAACAATCAGGGGTAGTAGACTGACCACTCATGACAAGGTTGAAGATAATCAAAAGATGTTTGATAATAGTGAAGCTGTATTTATGAGAAAAGAGAAAATGCAAAATGGAGGACTTGATAATCTGTGTGATGTGCCAAAGCCAGCTTTTCCCAAGTACCAGAAAGAACAGATGCAAGAATTTTTTAACCATCTCAACGTGCCGTCTGAAGAAGAATCGGAAAGTGAGGCTGAAAACTTTGAAGTTAGCTCAGAAGATAGAGTGGAAGCTGCTGCTGCTGCATTTTGCAGCCCTGTCAATGTTGCTGCAGGACCAGACTCTGAGGTTGATAAGAAGGCTGGTGAGTTTATAGCCAAATTTAGAGAGCAGATAAGGCGGCAGAAAGTTGCATCAATCGACAAATCAAGAGGGCTCGGCGTTAGTGGGAATCGCTCCAGAGACAATGTCTTCCTTTGGAATGAAAATGTGGACGATGACCGAGCATCGCCGAAGTTCCTAGTCTCTACTAAGATGGTCACCGAATTTTTGATATTTAGCAATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

643

Amino Acids

71.85

Weight (kDa)

8.45

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 568 - 596 3.2e-09 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 117
Acc65I GGTACC 1 cut(s) 1060
AccB1I GGYRCC 1 cut(s) 1060
AccB7I CCANNNNNTGG 1 cut(s) 482
AccI GTMKAC 1 cut(s) 1402
AciI CCGC 1 cut(s) 1759
AclWI GGATC 2 cut(s) 1290, 1336
AcsI RAATTY 9 cut(s) 185, 415, 523, 541, 796, 809, 1562, 1739, 1904
AcuI CTGAAG 3 cut(s) 830, 1107, 1611
AfaI GTAC 5 cut(s) 439, 551, 1031, 1062, 1541
AfiI CCNNNNNNNGG 2 cut(s) 44, 482
AjnI CCWGG 4 cut(s) 43, 364, 684, 1184
AloI GAACNNNNNNTCC 2 cut(s) 639, 671
Alw21I GWGCWC 1 cut(s) 1106
Alw26I GTCTC 2 cut(s) 1815, 1888
AlwI GGATC 2 cut(s) 1290, 1336
AlwNI CAGNNNCTG 3 cut(s) 1055, 1076, 1703
Ama87I CYCGRG 1 cut(s) 1107
AoxI GGCC 2 cut(s) 13, 917
ApeKI GCWGC 6 cut(s) 1652, 1655, 1658, 1661, 1671, 1688
ApoI RAATTY 9 cut(s) 185, 415, 523, 541, 796, 809, 1562, 1739, 1904
Asp700I GAANNNNTTC 1 cut(s) 1077
Asp718I GGTACC 1 cut(s) 1060
AspA2I CCTAGG 1 cut(s) 338
AspS9I GGNCC 4 cut(s) 14, 963, 972, 1694
AsuHPI GGTGA 7 cut(s) 389, 572, 791, 822, 1008, 1736, 1891
AvaI CYCGRG 1 cut(s) 1107
AvaII GGWCC 3 cut(s) 963, 972, 1694
AvrII CCTAGG 1 cut(s) 338
BaeGI GKGCMC 1 cut(s) 898
BanI GGYRCC 1 cut(s) 1060
BanII GRGCYC 2 cut(s) 1106, 1797
BbsI GAAGAC 2 cut(s) 1107, 1822
Bbv12I GWGCWC 1 cut(s) 1106
BbvCI CCTCAGC 1 cut(s) 1352
BbvI GCAGC 6 cut(s) 1639, 1642, 1645, 1648, 1675, 1683
BccI CCATC 8 cut(s) 283, 344, 482, 862, 1141, 1309, 1581, 1888
BceAI ACGGC 2 cut(s) 145, 1570
BciT130I CCWGG 4 cut(s) 45, 366, 686, 1186
BcoDI GTCTC 2 cut(s) 1815, 1888
BfaI CTAG 5 cut(s) 339, 708, 803, 999, 1880
BfmI CTRYAG 3 cut(s) 1047, 1192, 1689
BfuAI ACCTGC 1 cut(s) 117
BisI GCNGC 7 cut(s) 1653, 1656, 1659, 1662, 1672, 1689, 1760
BlnI CCTAGG 1 cut(s) 338
BlsI GCNGC 7 cut(s) 1654, 1657, 1660, 1663, 1673, 1690, 1761
BmcAI AGTACT 3 cut(s) 439, 551, 1031
Bme1390I CCNGG 4 cut(s) 45, 366, 686, 1186
Bme18I GGWCC 3 cut(s) 963, 972, 1694
BmeT110I CYCGRG 1 cut(s) 1107
BmgT120I GGNCC 4 cut(s) 14, 963, 972, 1694
BmiI GGNNCC 2 cut(s) 789, 1062
BmrFI CCNGG 4 cut(s) 45, 366, 686, 1186
BmrI ACTGGG 2 cut(s) 833, 1287
BmsI GCATC 5 cut(s) 442, 836, 1545, 1781, 1874
BmuI ACTGGG 2 cut(s) 833, 1287
BpiI GAAGAC 2 cut(s) 1107, 1822
BpmI CTGGAG 2 cut(s) 778, 1801
Bpu10I CCTNAGC 1 cut(s) 1352
BpuEI CTTGAG 2 cut(s) 413, 516
BsaJI CCNNGG 3 cut(s) 44, 338, 1185
BsaWI WCCGGW 1 cut(s) 969
BsaXI ACNNNNNCTCC 2 cut(s) 751, 781
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 482
Bse1I ACTGG 4 cut(s) 304, 761, 839, 1282
BseBI CCWGG 4 cut(s) 45, 366, 686, 1186
BseDI CCNNGG 3 cut(s) 44, 338, 1185
BseGI GGATG 5 cut(s) 54, 348, 607, 989, 1320
BseLI CCNNNNNNNGG 2 cut(s) 44, 482
BseMII CTCAG 9 cut(s) 425, 560, 687, 1047, 1083, 1248, 1366, 1647, 1695
BseNI ACTGG 4 cut(s) 304, 761, 839, 1282
BseRI GAGGAG 1 cut(s) 1229
BseSI GKGCMC 1 cut(s) 898
BseXI GCAGC 6 cut(s) 1639, 1642, 1645, 1648, 1675, 1683
BshFI GGCC 2 cut(s) 15, 919
BshNI GGYRCC 1 cut(s) 1060
BsiHKAI GWGCWC 1 cut(s) 1106
BsiHKCI CYCGRG 1 cut(s) 1107
BsiSI CCGG 1 cut(s) 970
BslI CCNNNNNNNGG 2 cut(s) 44, 482
BsmAI GTCTC 2 cut(s) 1815, 1888
BsmI GAATGC 1 cut(s) 1180
BsnI GGCC 2 cut(s) 15, 919
BsoBI CYCGRG 1 cut(s) 1107
Bsp1286I GDGCHC 3 cut(s) 898, 1106, 1797
Bsp143I GATC 2 cut(s) 1282, 1328
BspACI CCGC 1 cut(s) 1759
BspANI GGCC 2 cut(s) 15, 919
BspCNI CTCAG 9 cut(s) 424, 559, 688, 1048, 1082, 1247, 1365, 1646, 1696
BspHI TCATGA 1 cut(s) 1414
BspLI GGNNCC 2 cut(s) 789, 1062
BspMAI CTGCAG 1 cut(s) 1693
BspMI ACCTGC 1 cut(s) 117
BspPI GGATC 2 cut(s) 1290, 1336
BspQI GCTCTTC 1 cut(s) 1094
BspT107I GGYRCC 1 cut(s) 1060
BsrI ACTGG 4 cut(s) 304, 761, 839, 1282
BssECI CCNNGG 3 cut(s) 44, 338, 1185
BssMI GATC 2 cut(s) 1282, 1328
BssT1I CCWWGG 1 cut(s) 338
Bst2UI CCWGG 4 cut(s) 45, 366, 686, 1186
Bst4CI ACNGT 2 cut(s) 442, 1078
Bst6I CTCTTC 2 cut(s) 1039, 1094
BstC8I GCNNGC 3 cut(s) 1344, 1348, 1527
BstEII GGTNACC 2 cut(s) 425, 1897
BstF5I GGATG 5 cut(s) 54, 348, 607, 989, 1320
BstKTI GATC 2 cut(s) 1285, 1331
BstMAI GTCTC 2 cut(s) 1815, 1888
BstMBI GATC 2 cut(s) 1282, 1328
BstMWI GCNNNNNNNGC 4 cut(s) 270, 1658, 1661, 1756
BstNI CCWGG 4 cut(s) 45, 366, 686, 1186
BstPI GGTNACC 2 cut(s) 425, 1897
BstSCI CCNGG 4 cut(s) 43, 364, 684, 1184
BstSFI CTRYAG 3 cut(s) 1047, 1192, 1689
BstSLI GKGCMC 1 cut(s) 898
BstV1I GCAGC 6 cut(s) 1639, 1642, 1645, 1648, 1675, 1683
BstV2I GAAGAC 2 cut(s) 1107, 1822
BsuRI GGCC 2 cut(s) 15, 919
BtgZI GCGATG 1 cut(s) 1851
BtsCI GGATG 5 cut(s) 54, 348, 607, 989, 1320
BveI ACCTGC 1 cut(s) 117
Cac8I GCNNGC 3 cut(s) 1344, 1348, 1527
CaiI CAGNNNCTG 3 cut(s) 1055, 1076, 1703
CciI TCATGA 1 cut(s) 1414
Cfr13I GGNCC 4 cut(s) 14, 963, 972, 1694
CseI GACGC 1 cut(s) 1101
Csp6I GTAC 5 cut(s) 438, 550, 1030, 1061, 1540
CviAII CATG 1 cut(s) 1415
CviQI GTAC 5 cut(s) 438, 550, 1030, 1061, 1540
DpnI GATC 2 cut(s) 1284, 1330
DpnII GATC 2 cut(s) 1282, 1328
DraI TTTAAA 2 cut(s) 124, 514
Eam1104I CTCTTC 2 cut(s) 1039, 1094
EarI CTCTTC 2 cut(s) 1039, 1094
Ecl136II GAGCTC 1 cut(s) 1104
Eco130I CCWWGG 1 cut(s) 338
Eco24I GRGCYC 2 cut(s) 1106, 1797
Eco47I GGWCC 3 cut(s) 963, 972, 1694
Eco53kI GAGCTC 1 cut(s) 1104
Eco57I CTGAAG 3 cut(s) 830, 1107, 1611
Eco88I CYCGRG 1 cut(s) 1107
Eco91I GGTNACC 2 cut(s) 425, 1897
EcoICRI GAGCTC 1 cut(s) 1104
EcoO109I RGGNCCY 1 cut(s) 14
EcoO65I GGTNACC 2 cut(s) 425, 1897
EcoRI GAATTC 1 cut(s) 541
EcoRII CCWGG 4 cut(s) 43, 364, 684, 1184
EcoT14I CCWWGG 1 cut(s) 338
EcoT38I GRGCYC 2 cut(s) 1106, 1797
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 1 cut(s) 1418
FatI CATG 1 cut(s) 1414
FblI GTMKAC 1 cut(s) 1402
Fnu4HI GCNGC 7 cut(s) 1653, 1656, 1659, 1662, 1672, 1689, 1760
FokI GGATG 5 cut(s) 61, 355, 614, 976, 1327
FriOI GRGCYC 2 cut(s) 1106, 1797
Fsp4HI GCNGC 7 cut(s) 1653, 1656, 1659, 1662, 1672, 1689, 1760
FspBI CTAG 5 cut(s) 339, 708, 803, 999, 1880
GluI GCNGC 7 cut(s) 1653, 1656, 1659, 1662, 1672, 1689, 1760
GsuI CTGGAG 2 cut(s) 778, 1801
HaeIII GGCC 2 cut(s) 15, 919
HapII CCGG 1 cut(s) 970
HgaI GACGC 1 cut(s) 1101
Hin1II CATG 1 cut(s) 1418
HincII GTYRAC 1 cut(s) 1042
HindII GTYRAC 1 cut(s) 1042
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 9 cut(s) 8, 326, 563, 716, 1267, 1292, 1598, 1700, 1810
HpaI GTTAAC 1 cut(s) 1042
HpaII CCGG 1 cut(s) 970
HphI GGTGA 7 cut(s) 389, 572, 791, 822, 1008, 1736, 1891
Hpy166II GTNNAC 5 cut(s) 975, 1042, 1130, 1403, 1852
Hpy188III TCNNGA 9 cut(s) 182, 392, 494, 861, 1107, 1368, 1415, 1788, 1818
Hpy8I GTNNAC 5 cut(s) 975, 1042, 1130, 1403, 1852
HpyAV CCTTC 6 cut(s) 180, 843, 915, 976, 1131, 1711
HpyCH4III ACNGT 2 cut(s) 442, 1078
HpyCH4IV ACGT 1 cut(s) 1581
HpyF10VI GCNNNNNNNGC 4 cut(s) 270, 1658, 1661, 1756
HpySE526I ACGT 1 cut(s) 1581
Hsp92II CATG 1 cut(s) 1418
KpnI GGTACC 1 cut(s) 1064
KspAI GTTAAC 1 cut(s) 1042
Kzo9I GATC 2 cut(s) 1282, 1328
LguI GCTCTTC 1 cut(s) 1094
LmnI GCTCC 6 cut(s) 184, 220, 793, 1007, 1109, 1820
Lsp1109I GCAGC 6 cut(s) 1639, 1642, 1645, 1648, 1675, 1683
LweI GCATC 5 cut(s) 442, 836, 1545, 1781, 1874
MaeI CTAG 5 cut(s) 339, 708, 803, 999, 1880
MaeII ACGT 1 cut(s) 1581
MaeIII GTNAC 3 cut(s) 425, 703, 1897
MalI GATC 2 cut(s) 1284, 1330
MboI GATC 2 cut(s) 1282, 1328
MhlI GDGCHC 3 cut(s) 898, 1106, 1797
MlyI GAGTC 4 cut(s) 335, 725, 1276, 1694
MmeI TCCRAC 1 cut(s) 383
MroXI GAANNNNTTC 1 cut(s) 1077
MseI TTAA 6 cut(s) 123, 513, 678, 954, 1041, 1569
MspI CCGG 1 cut(s) 970
MspR9I CCNGG 4 cut(s) 45, 366, 686, 1186
Mva1269I GAATGC 1 cut(s) 1180
MvaI CCWGG 4 cut(s) 45, 366, 686, 1186
MwoI GCNNNNNNNGC 4 cut(s) 270, 1658, 1661, 1756
NdeII GATC 2 cut(s) 1282, 1328
NlaIII CATG 1 cut(s) 1418
NlaIV GGNNCC 2 cut(s) 789, 1062
NmeAIII GCCGAG 1 cut(s) 1776
NmuCI GTSAC 1 cut(s) 1897
PagI TCATGA 1 cut(s) 1414
PciSI GCTCTTC 1 cut(s) 1094
PctI GAATGC 1 cut(s) 1180
PdmI GAANNNNTTC 1 cut(s) 1077
PfeI GAWTC 5 cut(s) 8, 563, 1292, 1598, 1810
PflFI GACNNNGTC 1 cut(s) 1826
PflMI CCANNNNNTGG 1 cut(s) 482
PkrI GCNGC 7 cut(s) 1654, 1657, 1660, 1663, 1673, 1690, 1761
PleI GAGTC 4 cut(s) 334, 724, 1275, 1694
PpsI GAGTC 4 cut(s) 334, 724, 1275, 1694
Psp124BI GAGCTC 1 cut(s) 1106
Psp6I CCWGG 4 cut(s) 43, 364, 684, 1184
PspEI GGTNACC 2 cut(s) 425, 1897
PspGI CCWGG 4 cut(s) 43, 364, 684, 1184
PspN4I GGNNCC 2 cut(s) 789, 1062
PspPI GGNCC 4 cut(s) 14, 963, 972, 1694
PstI CTGCAG 1 cut(s) 1693
PstNI CAGNNNCTG 3 cut(s) 1055, 1076, 1703
PsyI GACNNNGTC 1 cut(s) 1826
RsaI GTAC 5 cut(s) 439, 551, 1031, 1062, 1541
RsaNI GTAC 5 cut(s) 438, 550, 1030, 1061, 1540
SacI GAGCTC 1 cut(s) 1106
SapI GCTCTTC 1 cut(s) 1094
SaqAI TTAA 6 cut(s) 123, 513, 678, 954, 1041, 1569
SatI GCNGC 7 cut(s) 1653, 1656, 1659, 1662, 1672, 1689, 1760
Sau3AI GATC 2 cut(s) 1282, 1328
Sau96I GGNCC 4 cut(s) 14, 963, 972, 1694
ScaI AGTACT 3 cut(s) 439, 551, 1031
SchI GAGTC 4 cut(s) 335, 725, 1276, 1694
ScrFI CCNGG 4 cut(s) 45, 366, 686, 1186
SduI GDGCHC 3 cut(s) 898, 1106, 1797
SfaNI GCATC 5 cut(s) 442, 836, 1545, 1781, 1874
SfcI CTRYAG 3 cut(s) 1047, 1192, 1689
SinI GGWCC 3 cut(s) 963, 972, 1694
SmlI CTYRAG 2 cut(s) 392, 531
SmoI CTYRAG 2 cut(s) 392, 531
SsiI CCGC 1 cut(s) 1759
SspMI CTAG 5 cut(s) 339, 708, 803, 999, 1880
SstI GAGCTC 1 cut(s) 1106
StyD4I CCNGG 4 cut(s) 43, 364, 684, 1184
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 2 cut(s) 442, 1078
TaiI ACGT 1 cut(s) 1584
TaqI TCGA 5 cut(s) 671, 854, 862, 1270, 1779
TaqII GACCGA 2 cut(s) 951, 1875
TatI WGTACW 3 cut(s) 437, 549, 1029
TauI GCSGC 1 cut(s) 1762
TfiI GAWTC 5 cut(s) 8, 563, 1292, 1598, 1810
Tru1I TTAA 6 cut(s) 123, 513, 678, 954, 1041, 1569
Tru9I TTAA 6 cut(s) 123, 513, 678, 954, 1041, 1569
TseFI GTSAC 1 cut(s) 1897
TseI GCWGC 6 cut(s) 1652, 1655, 1658, 1661, 1671, 1688
Tsp45I GTSAC 1 cut(s) 1897
TspDTI ATGAA 8 cut(s) 65, 218, 229, 372, 729, 948, 1070, 1857
Tth111I GACNNNGTC 1 cut(s) 1826
Van91I CCANNNNNTGG 1 cut(s) 482
VpaK11BI GGWCC 3 cut(s) 963, 972, 1694
XapI RAATTY 9 cut(s) 185, 415, 523, 541, 796, 809, 1562, 1739, 1904
XmaJI CCTAGG 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 1402
XmnI GAANNNNTTC 1 cut(s) 1077
XspI CTAG 5 cut(s) 339, 708, 803, 999, 1880
ZrmI AGTACT 3 cut(s) 439, 551, 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.