Rh1CG189100

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0009037
Physical Location & Seq
Forward (+)
41245654 .. 41248215
2562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG189100.1

Sequence Viewer

Length: 1821 bp
ATGGAGGATTCAGCCCCTTTCAGAAAACCCCACTTCCCAAATCCAGGGATGAACAACTCGTCAGCAGTTGAGTTTCAACAGAACCCCATTACACAAGGTAAGTCTTACCTGCAATTTCTGTTTAAAGGTGTCTTCTTTGTGGTTTTGGTCGTGGCTCTGCCCTTGTTTCCTTCACAAGCTCCTGAATTTATCAACGATACGATACTCAACAAGTTCTGGGAGCTCATTCATCTTCTTTTCATTGGAATTGCTGTGTCTTATGGCTTGTTTAGCAGAAGAAATGTTGAGATGGGGATTGAAAACCAGTCAAATGTTGAAAATGTAGAGTCTTATATGCCTAGGATGTTTGATGGGTATGAAAATCCATGTGGGTCTGGTGAGAAGAAAGTTCTTGAGAGTTGGAGTTCTCAGAATTTTGTAGGTAACCATAAAAGTACTGTTTCTTTTGATGCCCAATGCAAACCCAGATTGCCAAATTGTGGAGATGGTCTTGAAAATTCTTGTGGTTTTAAAAATAAGAATTTCCCTCAAGCTTGGAATTCTCAGTACTTTCAGGGTGAATCTATGGTTTTTGTAGCTCAACCAGATTATGCTGTTGATGAGTTTGTGAAACCCAAATCAGCAGTTGATGATGAGCCATTAGGATTGCCTGTTCGGAGTTTGAAATCGAGGGTTAAAAACCAGGAGAAGCCTGAGTTTGTTACTGGGAGTGAGCCTGGTTTTGGTTCAAAGGCTGCATCTAATAGTTTTGACTGGAGTAGGAATAGGAGCTTTGGTGATTTGGCTCCTATAAATTTACTAGAGAAATTCAATCAAGCTATGGCATCACCTTCCCCAGTTCTTCAGCGTTCGAGTTCTCGAAAGATGGAAAGGGGAAAAAGAGTAGGTAGTGCCCCTCGTCCTTCACATTTTAGGCCACTATCAGTTGATGAAGCTCAATTTGAGTTGCTAAAAACTCGGTCCTTCCGGTCCACATTGTCTTTCTCATCCGAAACTAGCTCCAAATCTTCTTCACCTGAAAAGGAGTACTCTTCTGTTAACTCTACAACTTCTGAGGTAGTGAACTCGGAAACGGTTCATTTGGGGAAAAGAAAGAAGAGCTCCCGAGCGTCTTCTCCTTCAGGTTTACCATCAGAACCAAATCCAATGATTGAAAAAGTTCCAATGGGTGGATTGCATTCGAGGGGCTATAGTGTAGGTTCTTTCTTTGAGGAGGATTTGAGGAAAAGCTCAGAGAATCACTTGAAGAAAGAATTGAATGGGAGTCGAATTACTGGGGATCAATATGATTCAGGTAAGAAAGAGTTGGGGACGGGGTCTTTCGGATCAGAGAAGAAGCCTGCAAGCCTCAGCAAATCTACATCAAGAGGAAAATCAGTCAGAACAATCAGGGGTAGTAGACTGACCACTCATGACAAGGTTGAAAACAATCAAAAGATGTTTGATAATGGTGAAGCTGTATTTATGAGAAAAGAGAAAATGCAAAATGGAGGACTTGATAATCTGTGTGATATGCCAAAGCCACCTTTTCCCAAGTACCAGAAGGAACAGATACAAGACTTTTTTAACCATCTCAATGTGCAGTCTGAAGAAGAATCGGAAAGTGAGGCTGAAAACTTTGAAGTGAGCTCAGAAGATAGAGTGGAAGCTGCTGCTGCTGCATTTTGCAACTCTGTCAATGTTGCAGCAGGACCAGACTCTGAGGTTGATAAGAAGGCTGGTGAGTTTATAGCCAAATTTAGAGAGCAGATAAGGCGTCAGAAAGTTGCATCAATCGAAAAATCAAGAGGGCTCGGCGTTAGTGGGAATCGCTCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

606

Amino Acids

67.42

Weight (kDa)

8.73

Isoelectric Point (pI)

51.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 567 - 595 1.3e-09 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 117
AccB7I CCANNNNNTGG 2 cut(s) 479, 1169
AccI GTMKAC 1 cut(s) 1399
AclWI GGATC 2 cut(s) 1287, 1333
AcsI RAATTY 8 cut(s) 185, 412, 496, 520, 538, 793, 806, 1736
AcuI CTGAAG 3 cut(s) 827, 1104, 1608
AcyI GRCGYC 1 cut(s) 1756
AfaI GTAC 4 cut(s) 436, 548, 1028, 1538
AfiI CCNNNNNNNGG 4 cut(s) 44, 479, 722, 1169
AjnI CCWGG 3 cut(s) 43, 681, 715
AloI GAACNNNNNNTCC 2 cut(s) 636, 668
Alw21I GWGCWC 3 cut(s) 225, 1103, 1631
AlwI GGATC 2 cut(s) 1287, 1333
AlwNI CAGNNNCTG 1 cut(s) 1700
Ama87I CYCGRG 1 cut(s) 1104
AoxI GGCC 1 cut(s) 914
ApeKI GCWGC 6 cut(s) 734, 1649, 1652, 1655, 1658, 1685
ApoI RAATTY 8 cut(s) 185, 412, 496, 520, 538, 793, 806, 1736
Asp700I GAANNNNTTC 2 cut(s) 1074, 1158
AspA2I CCTAGG 1 cut(s) 338
AspS9I GGNCC 3 cut(s) 960, 969, 1691
AsuHPI GGTGA 7 cut(s) 389, 569, 788, 819, 1005, 1463, 1733
AvaI CYCGRG 1 cut(s) 1104
AvaII GGWCC 3 cut(s) 960, 969, 1691
AvrII CCTAGG 1 cut(s) 338
BaeGI GKGCMC 1 cut(s) 895
BanII GRGCYC 4 cut(s) 225, 1103, 1631, 1794
BbsI GAAGAC 2 cut(s) 124, 1104
Bbv12I GWGCWC 3 cut(s) 225, 1103, 1631
BbvCI CCTCAGC 1 cut(s) 1349
BbvI GCAGC 6 cut(s) 721, 1636, 1639, 1642, 1645, 1697
BccI CCATC 6 cut(s) 283, 344, 479, 859, 1138, 1578
BciT130I CCWGG 3 cut(s) 45, 683, 717
BfaI CTAG 4 cut(s) 339, 800, 996, 1815
BfmI CTRYAG 1 cut(s) 1189
BfuAI ACCTGC 1 cut(s) 117
BisI GCNGC 6 cut(s) 735, 1650, 1653, 1656, 1659, 1686
BlnI CCTAGG 1 cut(s) 338
BlsI GCNGC 6 cut(s) 736, 1651, 1654, 1657, 1660, 1687
BmcAI AGTACT 3 cut(s) 436, 548, 1028
Bme1390I CCNGG 3 cut(s) 45, 683, 717
Bme18I GGWCC 3 cut(s) 960, 969, 1691
BmeT110I CYCGRG 1 cut(s) 1104
BmgT120I GGNCC 3 cut(s) 960, 969, 1691
BmiI GGNNCC 1 cut(s) 786
BmrFI CCNGG 3 cut(s) 45, 683, 717
BmrI ACTGGG 3 cut(s) 714, 830, 1284
BmsI GCATC 4 cut(s) 439, 746, 833, 1778
BmuI ACTGGG 3 cut(s) 714, 830, 1284
BpiI GAAGAC 2 cut(s) 124, 1104
BpmI CTGGAG 1 cut(s) 775
Bpu10I CCTNAGC 1 cut(s) 1349
BpuEI CTTGAG 2 cut(s) 413, 513
BsaHI GRCGYC 1 cut(s) 1756
BsaJI CCNNGG 2 cut(s) 44, 338
BsaWI WCCGGW 1 cut(s) 966
BsaXI ACNNNNNCTCC 2 cut(s) 760, 790
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 479, 722, 1169
Bse1I ACTGG 5 cut(s) 304, 709, 758, 836, 1279
BseBI CCWGG 3 cut(s) 45, 683, 717
BseDI CCNNGG 2 cut(s) 44, 338
BseGI GGATG 3 cut(s) 54, 348, 986
BseLI CCNNNNNNNGG 4 cut(s) 44, 479, 722, 1169
BseMII CTCAG 8 cut(s) 422, 557, 684, 1044, 1245, 1363, 1644, 1692
BseNI ACTGG 5 cut(s) 304, 709, 758, 836, 1279
BseRI GAGGAG 1 cut(s) 1226
BseSI GKGCMC 1 cut(s) 895
BseXI GCAGC 6 cut(s) 721, 1636, 1639, 1642, 1645, 1697
BsgI GTGCAG 1 cut(s) 1601
BshFI GGCC 1 cut(s) 916
BsiHKAI GWGCWC 3 cut(s) 225, 1103, 1631
BsiHKCI CYCGRG 1 cut(s) 1104
BsiSI CCGG 1 cut(s) 967
BslFI GGGAC 1 cut(s) 1324
BslI CCNNNNNNNGG 4 cut(s) 44, 479, 722, 1169
BsmFI GGGAC 1 cut(s) 1324
BsmI GAATGC 1 cut(s) 1177
BsnI GGCC 1 cut(s) 916
BsoBI CYCGRG 1 cut(s) 1104
Bsp1286I GDGCHC 5 cut(s) 225, 895, 1103, 1631, 1794
Bsp143I GATC 2 cut(s) 1279, 1325
BspANI GGCC 1 cut(s) 916
BspCNI CTCAG 8 cut(s) 421, 556, 685, 1045, 1244, 1362, 1643, 1693
BspHI TCATGA 1 cut(s) 1411
BspLI GGNNCC 1 cut(s) 786
BspMI ACCTGC 1 cut(s) 117
BspPI GGATC 2 cut(s) 1287, 1333
BspQI GCTCTTC 1 cut(s) 1091
BsrI ACTGG 5 cut(s) 304, 709, 758, 836, 1279
BssECI CCNNGG 2 cut(s) 44, 338
BssMI GATC 2 cut(s) 1279, 1325
BssNI GRCGYC 1 cut(s) 1756
BssT1I CCWWGG 1 cut(s) 338
Bst2UI CCWGG 3 cut(s) 45, 683, 717
Bst4CI ACNGT 2 cut(s) 439, 1075
Bst6I CTCTTC 2 cut(s) 1036, 1091
BstACI GRCGYC 1 cut(s) 1756
BstC8I GCNNGC 2 cut(s) 1341, 1345
BstDEI CTNAG 8 cut(s) 408, 543, 693, 1053, 1231, 1349, 1630, 1701
BstEII GGTNACC 1 cut(s) 422
BstF5I GGATG 3 cut(s) 54, 348, 986
BstKTI GATC 2 cut(s) 1282, 1328
BstMBI GATC 2 cut(s) 1279, 1325
BstMWI GCNNNNNNNGC 4 cut(s) 270, 1655, 1658, 1753
BstNI CCWGG 3 cut(s) 45, 683, 717
BstPI GGTNACC 1 cut(s) 422
BstSCI CCNGG 3 cut(s) 43, 681, 715
BstSFI CTRYAG 1 cut(s) 1189
BstSLI GKGCMC 1 cut(s) 895
BstV1I GCAGC 6 cut(s) 721, 1636, 1639, 1642, 1645, 1697
BstV2I GAAGAC 2 cut(s) 124, 1104
BsuRI GGCC 1 cut(s) 916
BtsCI GGATG 3 cut(s) 54, 348, 986
BveI ACCTGC 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 1341, 1345
CaiI CAGNNNCTG 1 cut(s) 1700
CciI TCATGA 1 cut(s) 1411
Cfr13I GGNCC 3 cut(s) 960, 969, 1691
CseI GACGC 2 cut(s) 1098, 1745
Csp6I GTAC 4 cut(s) 435, 547, 1027, 1537
CviAII CATG 2 cut(s) 366, 1412
CviQI GTAC 4 cut(s) 435, 547, 1027, 1537
DdeI CTNAG 8 cut(s) 408, 543, 693, 1053, 1231, 1349, 1630, 1701
DpnI GATC 2 cut(s) 1281, 1327
DpnII GATC 2 cut(s) 1279, 1325
DraI TTTAAA 2 cut(s) 124, 511
Eam1104I CTCTTC 2 cut(s) 1036, 1091
EarI CTCTTC 2 cut(s) 1036, 1091
Ecl136II GAGCTC 3 cut(s) 223, 1101, 1629
Eco130I CCWWGG 1 cut(s) 338
Eco24I GRGCYC 4 cut(s) 225, 1103, 1631, 1794
Eco47I GGWCC 3 cut(s) 960, 969, 1691
Eco53kI GAGCTC 3 cut(s) 223, 1101, 1629
Eco57I CTGAAG 3 cut(s) 827, 1104, 1608
Eco88I CYCGRG 1 cut(s) 1104
Eco91I GGTNACC 1 cut(s) 422
EcoICRI GAGCTC 3 cut(s) 223, 1101, 1629
EcoO65I GGTNACC 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 538
EcoRII CCWGG 3 cut(s) 43, 681, 715
EcoT14I CCWWGG 1 cut(s) 338
EcoT38I GRGCYC 4 cut(s) 225, 1103, 1631, 1794
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 2 cut(s) 369, 1415
FaqI GGGAC 1 cut(s) 1324
FatI CATG 2 cut(s) 365, 1411
FblI GTMKAC 1 cut(s) 1399
Fnu4HI GCNGC 6 cut(s) 735, 1650, 1653, 1656, 1659, 1686
FokI GGATG 3 cut(s) 61, 355, 973
FriOI GRGCYC 4 cut(s) 225, 1103, 1631, 1794
Fsp4HI GCNGC 6 cut(s) 735, 1650, 1653, 1656, 1659, 1686
FspBI CTAG 4 cut(s) 339, 800, 996, 1815
GluI GCNGC 6 cut(s) 735, 1650, 1653, 1656, 1659, 1686
GsuI CTGGAG 1 cut(s) 775
HaeIII GGCC 1 cut(s) 916
HapII CCGG 1 cut(s) 967
HgaI GACGC 2 cut(s) 1098, 1745
Hin1I GRCGYC 1 cut(s) 1756
Hin1II CATG 2 cut(s) 369, 1415
HincII GTYRAC 1 cut(s) 1039
HindII GTYRAC 1 cut(s) 1039
HindIII AAGCTT 1 cut(s) 531
HinfI GANTC 9 cut(s) 8, 326, 560, 1237, 1264, 1289, 1595, 1697, 1807
HpaI GTTAAC 1 cut(s) 1039
HpaII CCGG 1 cut(s) 967
HphI GGTGA 7 cut(s) 389, 569, 788, 819, 1005, 1463, 1733
Hpy166II GTNNAC 5 cut(s) 972, 1039, 1063, 1127, 1400
Hpy188III TCNNGA 8 cut(s) 182, 392, 491, 858, 1104, 1365, 1412, 1785
Hpy8I GTNNAC 5 cut(s) 972, 1039, 1063, 1127, 1400
HpyAV CCTTC 7 cut(s) 180, 840, 912, 973, 1128, 1537, 1708
HpyCH4III ACNGT 2 cut(s) 439, 1075
HpyF10VI GCNNNNNNNGC 4 cut(s) 270, 1655, 1658, 1753
HpyF3I CTNAG 8 cut(s) 408, 543, 693, 1053, 1231, 1349, 1630, 1701
Hsp92I GRCGYC 1 cut(s) 1756
Hsp92II CATG 2 cut(s) 369, 1415
KspAI GTTAAC 1 cut(s) 1039
Kzo9I GATC 2 cut(s) 1279, 1325
LguI GCTCTTC 1 cut(s) 1091
LmnI GCTCC 6 cut(s) 184, 220, 768, 790, 1004, 1106
Lsp1109I GCAGC 6 cut(s) 721, 1636, 1639, 1642, 1645, 1697
LweI GCATC 4 cut(s) 439, 746, 833, 1778
MaeI CTAG 4 cut(s) 339, 800, 996, 1815
MaeIII GTNAC 2 cut(s) 422, 700
MalI GATC 2 cut(s) 1281, 1327
MboI GATC 2 cut(s) 1279, 1325
MhlI GDGCHC 5 cut(s) 225, 895, 1103, 1631, 1794
MlyI GAGTC 3 cut(s) 335, 1273, 1691
MmeI TCCRAC 1 cut(s) 380
MroXI GAANNNNTTC 2 cut(s) 1074, 1158
MseI TTAA 5 cut(s) 123, 510, 675, 1038, 1566
MslI CAYNNNNRTG 1 cut(s) 1575
MspI CCGG 1 cut(s) 967
MspR9I CCNGG 3 cut(s) 45, 683, 717
Mva1269I GAATGC 1 cut(s) 1177
MvaI CCWGG 3 cut(s) 45, 683, 717
MwoI GCNNNNNNNGC 4 cut(s) 270, 1655, 1658, 1753
NdeII GATC 2 cut(s) 1279, 1325
NlaIII CATG 2 cut(s) 369, 1415
NlaIV GGNNCC 1 cut(s) 786
NmeAIII GCCGAG 1 cut(s) 1773
PagI TCATGA 1 cut(s) 1411
PciSI GCTCTTC 1 cut(s) 1091
PctI GAATGC 1 cut(s) 1177
PdmI GAANNNNTTC 2 cut(s) 1074, 1158
PfeI GAWTC 6 cut(s) 8, 560, 1237, 1289, 1595, 1807
PflFI GACNNNGTC 1 cut(s) 1315
PflMI CCANNNNNTGG 2 cut(s) 479, 1169
PkrI GCNGC 6 cut(s) 736, 1651, 1654, 1657, 1660, 1687
PleI GAGTC 3 cut(s) 334, 1272, 1691
PpsI GAGTC 3 cut(s) 334, 1272, 1691
Psp124BI GAGCTC 3 cut(s) 225, 1103, 1631
Psp6I CCWGG 3 cut(s) 43, 681, 715
PspEI GGTNACC 1 cut(s) 422
PspGI CCWGG 3 cut(s) 43, 681, 715
PspN4I GGNNCC 1 cut(s) 786
PspPI GGNCC 3 cut(s) 960, 969, 1691
PstNI CAGNNNCTG 1 cut(s) 1700
PsyI GACNNNGTC 1 cut(s) 1315
RsaI GTAC 4 cut(s) 436, 548, 1028, 1538
RsaNI GTAC 4 cut(s) 435, 547, 1027, 1537
RseI CAYNNNNRTG 1 cut(s) 1575
SacI GAGCTC 3 cut(s) 225, 1103, 1631
SapI GCTCTTC 1 cut(s) 1091
SaqAI TTAA 5 cut(s) 123, 510, 675, 1038, 1566
SatI GCNGC 6 cut(s) 735, 1650, 1653, 1656, 1659, 1686
Sau3AI GATC 2 cut(s) 1279, 1325
Sau96I GGNCC 3 cut(s) 960, 969, 1691
ScaI AGTACT 3 cut(s) 436, 548, 1028
SchI GAGTC 3 cut(s) 335, 1273, 1691
ScrFI CCNGG 3 cut(s) 45, 683, 717
SduI GDGCHC 5 cut(s) 225, 895, 1103, 1631, 1794
SfaNI GCATC 4 cut(s) 439, 746, 833, 1778
SfcI CTRYAG 1 cut(s) 1189
SinI GGWCC 3 cut(s) 960, 969, 1691
SmiMI CAYNNNNRTG 1 cut(s) 1575
SmlI CTYRAG 2 cut(s) 392, 528
SmoI CTYRAG 2 cut(s) 392, 528
SspMI CTAG 4 cut(s) 339, 800, 996, 1815
SstI GAGCTC 3 cut(s) 225, 1103, 1631
StyD4I CCNGG 3 cut(s) 43, 681, 715
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 2 cut(s) 439, 1075
TaqI TCGA 6 cut(s) 668, 851, 859, 1181, 1267, 1776
TaqII GACCGA 1 cut(s) 948
TatI WGTACW 3 cut(s) 434, 546, 1026
TfiI GAWTC 6 cut(s) 8, 560, 1237, 1289, 1595, 1807
Tru1I TTAA 5 cut(s) 123, 510, 675, 1038, 1566
Tru9I TTAA 5 cut(s) 123, 510, 675, 1038, 1566
TseI GCWGC 6 cut(s) 734, 1649, 1652, 1655, 1658, 1685
TspDTI ATGAA 6 cut(s) 65, 218, 229, 372, 945, 1067
Tth111I GACNNNGTC 1 cut(s) 1315
Van91I CCANNNNNTGG 2 cut(s) 479, 1169
VpaK11BI GGWCC 3 cut(s) 960, 969, 1691
XapI RAATTY 8 cut(s) 185, 412, 496, 520, 538, 793, 806, 1736
XmaJI CCTAGG 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 1399
XmnI GAANNNNTTC 2 cut(s) 1074, 1158
XspI CTAG 4 cut(s) 339, 800, 996, 1815
ZrmI AGTACT 3 cut(s) 436, 548, 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.