pycom02g17820

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0009037
Physical Location & Seq
Reverse (-)
16065803 .. 16066249
447 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g17820.1

Sequence Viewer

Length: 447 bp
ATGCGAGGCATTGGTGATTTTATACCTATGAGAAAAGATACAATGCAAAACGGAGGAACCAATGTGAAAAATCTCGGCACTGCAACTACTAAGCTCGATTTTGGCAATCCCTTGCAGCCAAAGCCAGAAATTCCAAAACATGAGAAGAAGCAGATGCGAGAATTTCGTGGCAATGCAGCTGCAGAGTCTGAAGAAGAAGAAGACTTGGAAAGTGAGGCGGAAAACTTTGAAGTAAGCTCGGATGATGAAGGCGAAGATGACGCTATTGCTGCTGCTGCTGCTGCGGCTACATGTAGTAACTGTGTGGATGTTGGAGCAGCAGACTCAGAGGTTGATAAGAAGGCGGGCGAGTTCATAGCGAAATTTAGAGAGCAGATTAGGCTTCAAAAAGTGGCATCAATGGACCGATCAAGAGCGCAACACATCTCTGCTAATTCGTTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

149

Amino Acids

16.14

Weight (kDa)

4.8

Isoelectric Point (pI)

25.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 109 - 137 5.7e-11 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 218, 284, 344
AcsI RAATTY 3 cut(s) 129, 161, 362
AcuI CTGAAG 1 cut(s) 210
AflIII ACRYGT 1 cut(s) 290
AgsI TTSAA 2 cut(s) 230, 386
AluBI AGCT 3 cut(s) 94, 179, 237
AluI AGCT 3 cut(s) 94, 179, 237
AlwNI CAGNNNCTG 1 cut(s) 188
ApeKI GCWGC 9 cut(s) 115, 176, 179, 269, 272, 275, 278, 281, 317
ApoI RAATTY 3 cut(s) 129, 161, 362
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 1 cut(s) 403
AsuHPI GGTGA 1 cut(s) 26
AvaII GGWCC 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 207
BbvI GCAGC 9 cut(s) 127, 166, 188, 256, 259, 262, 265, 268, 329
BfmI CTRYAG 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 403
BmiI GGNNCC 1 cut(s) 58
BmsI GCATC 2 cut(s) 144, 404
BpiI GAAGAC 1 cut(s) 207
Bse3DI GCAATG 1 cut(s) 178
BseGI GGATG 2 cut(s) 247, 313
BseMI GCAATG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 339
BseXI GCAGC 9 cut(s) 127, 166, 188, 256, 259, 262, 265, 268, 329
Bsp143I GATC 1 cut(s) 407
BspACI CCGC 3 cut(s) 218, 284, 344
BspCNI CTCAG 1 cut(s) 338
BspLI GGNNCC 1 cut(s) 58
BspMAI CTGCAG 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 178
BssMI GATC 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 90, 325
BstF5I GGATG 2 cut(s) 247, 313
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 1 cut(s) 410
BstMBI GATC 1 cut(s) 407
BstMWI GCNNNNNNNGC 7 cut(s) 121, 269, 275, 278, 281, 284, 379
BstNSI RCATGY 1 cut(s) 294
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 9 cut(s) 127, 166, 188, 256, 259, 262, 265, 268, 329
BstV2I GAAGAC 1 cut(s) 207
BtsCI GGATG 2 cut(s) 247, 313
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 346
CaiI CAGNNNCTG 1 cut(s) 188
CfoI GCGC 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 403
CseI GACGC 1 cut(s) 269
CviAII CATG 2 cut(s) 140, 291
CviJI RGCY 7 cut(s) 94, 118, 124, 179, 237, 287, 382
CviKI_1 RGCY 7 cut(s) 94, 118, 124, 179, 237, 287, 382
DdeI CTNAG 2 cut(s) 90, 325
DpnI GATC 1 cut(s) 409
DpnII GATC 1 cut(s) 407
EciI GGCGGA 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 210
FaeI CATG 2 cut(s) 143, 294
FaiI YATR 5 cut(s) 23, 29, 141, 292, 356
FatI CATG 2 cut(s) 139, 290
FauI CCCGC 1 cut(s) 337
FokI GGATG 2 cut(s) 254, 320
GlaI GCGC 1 cut(s) 417
HgaI GACGC 1 cut(s) 269
HhaI GCGC 1 cut(s) 418
Hin1II CATG 2 cut(s) 143, 294
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HinfI GANTC 2 cut(s) 185, 323
HphI GGTGA 1 cut(s) 26
Hpy188I TCNGA 3 cut(s) 190, 241, 328
Hpy188III TCNNGA 1 cut(s) 411
HpyAV CCTTC 2 cut(s) 242, 334
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4V TGCA 5 cut(s) 46, 83, 115, 176, 182
HpyF10VI GCNNNNNNNGC 7 cut(s) 121, 269, 275, 278, 281, 284, 379
HpyF3I CTNAG 2 cut(s) 90, 325
Hsp92II CATG 2 cut(s) 143, 294
HspAI GCGC 1 cut(s) 416
Kzo9I GATC 1 cut(s) 407
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 1 cut(s) 138
Lsp1109I GCAGC 9 cut(s) 127, 166, 188, 256, 259, 262, 265, 268, 329
LweI GCATC 2 cut(s) 144, 404
MaeIII GTNAC 1 cut(s) 296
MalI GATC 1 cut(s) 409
MboI GATC 1 cut(s) 407
MboII GAAGA 6 cut(s) 157, 203, 206, 209, 212, 266
MluCI AATT 4 cut(s) 129, 161, 362, 433
MlyI GAGTC 2 cut(s) 194, 317
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 3 cut(s) 47, 208, 322
MseI TTAA 1 cut(s) 441
MspA1I CMGCKG 1 cut(s) 179
MwoI GCNNNNNNNGC 7 cut(s) 121, 269, 275, 278, 281, 284, 379
NdeII GATC 1 cut(s) 407
NlaIII CATG 2 cut(s) 143, 294
NlaIV GGNNCC 1 cut(s) 58
NmeAIII GCCGAG 1 cut(s) 54
NspI RCATGY 1 cut(s) 294
PciI ACATGT 1 cut(s) 290
PleI GAGTC 2 cut(s) 193, 317
PpsI GAGTC 2 cut(s) 193, 317
PscI ACATGT 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 403
PstI CTGCAG 1 cut(s) 184
PstNI CAGNNNCTG 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 179
SaqAI TTAA 1 cut(s) 441
Sau3AI GATC 1 cut(s) 407
Sau96I GGNCC 1 cut(s) 403
SchI GAGTC 2 cut(s) 194, 317
SetI ASST 5 cut(s) 28, 96, 181, 239, 333
SfaNI GCATC 2 cut(s) 144, 404
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 403
Sse9I AATT 4 cut(s) 129, 161, 362, 433
SsiI CCGC 3 cut(s) 218, 284, 344
TaaI ACNGT 1 cut(s) 302
TaqI TCGA 1 cut(s) 96
TaqII GACCGA 1 cut(s) 420
TasI AATT 4 cut(s) 129, 161, 362, 433
TauI GCSGC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 1 cut(s) 85
TseI GCWGC 9 cut(s) 115, 176, 179, 269, 272, 275, 278, 281, 317
TspDTI ATGAA 2 cut(s) 261, 343
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 403
XapI RAATTY 3 cut(s) 129, 161, 362
XceI RCATGY 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.