Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008368

Physical Location & Seq

Genomic Coordinates Forward (+)

12000040 .. 12006508

Gene Structure 6469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13350.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2493 bp

ATGAGTTTTGGGGGTTTTCTTGACAATAGTACCGGCAGTAGTGGCGGTGCAAGAATCGTCGCTGATATTCCTTATAACCACCACCCCCACCACAACGCCAACCACACCAGTATGCCCTCTAGTGCCATCGCTCAGCCTCGACTTGTCACTCAGTCTCTCACCAAATCCATGTTCAACAACTCACCCGGCCTCTCACTCGCTCTTCAGACTAATGCCGACGGAGGCGGAGACGCGGCGAGAATGGCGGAGAATTTCGAGGGGAACAACAACGTCGGCGGGAGGAGGAGTCGGGAGGAGGAGAACGAGATCAGTAGATCTGGCAGCGATAACATGGACGGCGCCGGCTCCGGCGATGAAGGAGACGCCGCGGATAACAGTAACCCTCGTAAGAAGAAGAGATACCACCGACACACCCCGCAGCAAATCCAAGAGCTCGAAGCGTTGTTCAAGGAGTGCCCTCATCCTGATGAGAAACAAAGATTGGAGCTTAGCAGAAGGCTAAATCTTGAGACCCGGCAAGTCAAGTTCTGGTTCCAAAATCGTCGAACCCAGATGAAGACTCAACTTGAAAGGCATGAGAACTCTTTGCTGAGGCAAGAAAACGATAAGCTTCGGGCCGAAAACATGTCGATTAGGGATGCCATGAGGAACCCAATTTGCACAAACTGCGGTGGTCCGGCCATGATTGGCGATATTTCTATTGAAGAGCAGCATCTTAGGATCGACAATGCCCGATTAAAGGATGAGTTAGACCGGGTTTGTGCACTCGCCGGGAAGTTCTTGGGCCGCCCGATTTCGTCTCTAGGTCCATCAATGGGGCCTCCACTGCCGAGTTCAGCTCTGGAGCTCGGAGTTGGGAACAATGGGTTTGGTGGGATGAGCTCAGTGTCTACATCAATGCCATTGGGACCTGATTTCGGAGCGGGGCTTGGGGGTGGCATGCCACTTGTGGCTCACACAAGGCCGGTGGCGGGAGGGCTGGACGAGAGGACCATGTTTCTAGAGCTGGCTTTGGCCGCCATGGATGAGCTTGTGAAGCTGGCTCAGACTGATGAGCCACTTTGGAGTTTGGAAGGTGGGAGAGAGATTCTGAATCACGAGGAGTACATGAGGAGTTTCACGCCTTGCATTGGGTTGAAGCCTAATGGCTTCGTTACCGAGGCTTCTAGGGAGACTGGTATGGTCATCATCAACAGTTTGGCTCTGGTTGAGACTCTGATGGACTCGAATCGATGGCTGGAGATGTTCCCATGTATGATTGCCAGAACTTCTACCACTGATGTAATTTCCAGCGGTATGGGAGGGACTAGAAATGGTGCACTTCAACTGATGCATGCTGAGCTTCAAGTCCTATCTCCTTTGGTTCCAGTCCGTGAGGTCAACTTCCTCCGCTTCTGCAAGCAGCATGCCGAGGGTGTGTGGGCAGTGGTGGATGTATCCGTCGACACCATCCGAGACAATTCCGGTGCACCCACATTTGCAAACTGCAGGAGGCTCCCTTCTGGCTGTGTTGTGCAAGATATGCCTAATGGTTACTCCAAGGTTACATGGGTTGAGCATGCGGAGTACGACGAGAGCCAAGTCCACCACCTGTACCGACCCTTATTGAGTTCCGGCATGGGGTTCGGCGCGCAGAGGTGGGTCGCCACCCTCCAGCGTCAATGCCAGTGCCTTGCTATCCTCATGTCCTCCACAGTCCCCGCCCGTGATCACGCCAATACCATCACTCAGAGCGGGAGGAAGAGCATGCTGAAGCTAGCGCAGCGAATGACTGACAACTTCTGCGCTGGGGTCTGCGCGTCGACGGTGCACAAATGGAACAAGCTGAACGCCGGCAACGTGGACGAGGACGTCCGCTACATGACCAGAGAGAGCATGGACGACCCCGGCGAGCCGCCTGGCATTGTGCTCAGCGCAGCCACCTCGGTCTGGCTCCCAGTCTCCCCACAGAGGCTATTCAATTTCTTGCGCGATGAGCGTCTTAGGAGCGAGTGGGACATCCTCTCCAACGGTGGGCCTATGCAGGAGATGGCCCACATCGCCAAGGGCCAGGACCAAGGCAACTGCGTCTCCCTACTCCGCGCCAGAGCCATGAACGCAAACCAGAACAGCATGCTGATACTACAAGAGACGTGCATCGACGCGGCGGGGTCGCTTGTGGTGTACGCGCCGGTGGACATTCCGGCAATGCACGTGGTGATGAACGGAGGGGACTCTGCCTACGTGGCGCTGCTGCCGTCGGGGTTTGCGATAGTCCCGGACGGTCCGGGGTCGCGTGGGCCCGGCGGGGCGGAGGGGAAGGCGGGGCAGGGAAGCAGTAACGGTAACGGCGGAGAGGCGAGGGTGAGTGGATCATTGCTAACGATGACGTTTCAGATACTGGTCAACAGTCTGCCGTCGGCGAAGTTGACCGTGGAGTCGGTGGAGACGGTTAACAATCTCATCTCCTGCACCGTCCAGAAGATCAAGGGCGCGCTCCAATGCGAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042335 GO:0042545 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0045229 GO:0045595 GO:0045596 GO:0048364 GO:0048367 GO:0048437 GO:0048468 GO:0048469 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090627 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

831

Amino Acids

89.98

Weight (kDa)

5.94

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	130 - 185	1.7e-19	Homeodomain
START	PF01852	334 - 556	1.4e-53	START domain
PDF2_C	PF25797	576 - 827	1.1e-102	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61150 AT4G00730 AT4G00730
fragaria_vesca	FvH4_7g13350 FvH4_7g13350
malus_domestica	MD01G1050200.v1.1 MD07G1127600.v1.1
prunus_persica	Prupe.2G156900_v2.0.a1 Prupe.2G156900_v2.0.a1
pyrus_communis	pycom01g07490 pycom07g12270
rosa_chinensis	RchiOBHm_Chr1g0352671
rosa_laevigata	RLG00000028322
rosa_multiflora	Rmu_co8513183.1_g000001 Rmu_sc0005118.1_g000003
rosa_roxburghii	Rroxscaffold_4G00302500
rosa_rugosa	Rorug01G0230700 Rorug01G0230800 Rorug01G0230900
rosa_samantha	Rh1AG243900 Rh1BG214500 Rh1CG227900 Rh1DG240600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	75
AasI	GACNNNNNNGTC	2 cut(s)	1850, 2416
AatII	GACGTC	1 cut(s)	1854
AccB1I	GGYRCC	1 cut(s)	338
AccBSI	CCGCTC	2 cut(s)	923, 1734
AccI	GTMKAC	3 cut(s)	890, 1443, 1802
AclWI	GGATC	2 cut(s)	728, 2359
AcoI	YGGCCR	2 cut(s)	678, 1014
AcsI	RAATTY	1 cut(s)	250
AcuI	CTGAAG	2 cut(s)	188, 1772
AcvI	CACGTG	1 cut(s)	2194
AcyI	GRCGYC	3 cut(s)	339, 363, 1851
AdeI	CACNNNGTG	1 cut(s)	2197
AfaI	GTAC	5 cut(s)	31, 1106, 1568, 1595, 2165
AfiI	CCNNNNNNNGG	9 cut(s)	739, 815, 917, 971, 1130, 1620, 1929, 1950, 2013
AflIII	ACRYGT	1 cut(s)	624
AgsI	TTSAA	8 cut(s)	175, 448, 569, 704, 1138, 1325, 1346, 1960
AjiI	CACGTC	1 cut(s)	2133
AjnI	CCWGG	2 cut(s)	1897, 2049
AjuI	GAANNNNNNNTTGG	4 cut(s)	155, 187, 464, 496
Alw21I	GWGCWC	8 cut(s)	435, 766, 849, 884, 1321, 1471, 1812, 1911
Alw44I	GTGCAC	4 cut(s)	762, 1317, 1467, 1808
AlwI	GGATC	2 cut(s)	728, 2359
AlwNI	CAGNNNCTG	1 cut(s)	2380
ApaI	GGGCCC	1 cut(s)	2283
ApaLI	GTGCAC	4 cut(s)	762, 1317, 1467, 1808
ApeKI	GCWGC	8 cut(s)	321, 418, 709, 1402, 1762, 1916, 2230, 2233
ApoI	RAATTY	1 cut(s)	250
AsuC2I	CCSGG	8 cut(s)	186, 514, 755, 772, 1887, 2258, 2268, 2283
AsuHPI	GGTGA	4 cut(s)	151, 174, 2209, 2356
AsuNHI	GCTAGC	1 cut(s)	1756
AvaII	GGWCC	6 cut(s)	674, 806, 908, 990, 2053, 2264
BaeGI	GKGCMC	6 cut(s)	458, 766, 1321, 1471, 1812, 2283
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BanI	GGYRCC	1 cut(s)	338
BanII	GRGCYC	4 cut(s)	435, 849, 884, 2283
BarI	GAAGNNNNNNTAC	2 cut(s)	383, 415
BauI	CACGAG	1 cut(s)	1097
BbrPI	CACGTG	1 cut(s)	2194
BbsI	GAAGAC	1 cut(s)	563
Bbv12I	GWGCWC	8 cut(s)	435, 766, 849, 884, 1321, 1471, 1812, 1911
BbvCI	CCTCAGC	1 cut(s)	590
BbvI	GCAGC	8 cut(s)	333, 430, 721, 1414, 1774, 1928, 2217, 2220
BccI	CCATC	7 cut(s)	134, 817, 1213, 1227, 1457, 1730, 2023
BceAI	ACGGC	4 cut(s)	352, 2221, 2344, 2380
BcgI	CGANNNNNNTGC	4 cut(s)	1606, 1640, 1905, 1939
BciT130I	CCWGG	2 cut(s)	1899, 2051
BciVI	GTATCC	1 cut(s)	1447
BclI	TGATCA	1 cut(s)	1708
BcnI	CCSGG	8 cut(s)	186, 514, 755, 772, 1887, 2258, 2268, 2283
BfaI	CTAG	6 cut(s)	120, 803, 1001, 1167, 1308, 1757
BfmI	CTRYAG	1 cut(s)	1486
BfoI	RGCGCY	2 cut(s)	342, 2231
BfuI	GTATCC	1 cut(s)	1447
BglI	GCCNNNNNGGC	1 cut(s)	2225
BglII	AGATCT	1 cut(s)	314
BlpI	GCTNAGC	4 cut(s)	132, 488, 1338, 1910
Bme18I	GGWCC	6 cut(s)	674, 806, 908, 990, 2053, 2264
BmgBI	CACGTC	1 cut(s)	2133
BmrI	ACTGGG	1 cut(s)	1931
BmsI	GCATC	4 cut(s)	628, 721, 1320, 2145
BmtI	GCTAGC	1 cut(s)	1760
BmuI	ACTGGG	1 cut(s)	1931
BpiI	GAAGAC	1 cut(s)	563
BplI	GAGNNNNNCTC	2 cut(s)	823, 855
BpmI	CTGGAG	3 cut(s)	863, 1259, 1637
Bpu10I	CCTNAGC	1 cut(s)	590
Bpu1102I	GCTNAGC	4 cut(s)	132, 488, 1338, 1910
BpuEI	CTTGAG	1 cut(s)	527
BpuMI	CCSGG	8 cut(s)	186, 514, 755, 772, 1887, 2258, 2268, 2283
Bsa29I	ATCGAT	1 cut(s)	1231
BsaAI	YACGTR	2 cut(s)	2194, 2224
BsaHI	GRCGYC	3 cut(s)	339, 363, 1851
BsaI	GGTCTC	1 cut(s)	503
BsaWI	WCCGGW	1 cut(s)	1463
BsaXI	ACNNNNNCTCC	6 cut(s)	271, 301, 1988, 2018, 2054, 2084
Bsc4I	CCNNNNNNNGG	9 cut(s)	739, 815, 917, 971, 1130, 1620, 1929, 1950, 2013
Bse118I	RCCGGY	5 cut(s)	32, 341, 964, 1832, 2170
Bse1I	ACTGG	6 cut(s)	108, 1180, 1367, 1666, 1937, 2385
Bse3DI	GCAATG	2 cut(s)	2193, 2354
BseBI	CCWGG	2 cut(s)	1899, 2051
BseCI	ATCGAT	1 cut(s)	1231
BseGI	GGATG	8 cut(s)	460, 643, 748, 882, 1030, 1438, 1449, 1998
BseLI	CCNNNNNNNGG	9 cut(s)	739, 815, 917, 971, 1130, 1620, 1929, 1950, 2013
BseMI	GCAATG	2 cut(s)	2193, 2354
BseMII	CTCAG	8 cut(s)	146, 164, 581, 897, 1058, 1329, 1742, 1924
BseNI	ACTGG	6 cut(s)	108, 1180, 1367, 1666, 1937, 2385
BsePI	GCGCGC	2 cut(s)	1629, 2472
BseRI	GAGGAG	6 cut(s)	295, 298, 308, 311, 1115, 1126
BseSI	GKGCMC	6 cut(s)	458, 766, 1321, 1471, 1812, 2283
BseXI	GCAGC	8 cut(s)	333, 430, 721, 1414, 1774, 1928, 2217, 2220
BseYI	CCCAGC	1 cut(s)	1787
BsgI	GTGCAG	1 cut(s)	2434
BshNI	GGYRCC	1 cut(s)	338
BshVI	ATCGAT	1 cut(s)	1231
BsiHKAI	GWGCWC	8 cut(s)	435, 766, 849, 884, 1321, 1471, 1812, 1911
BslFI	GGGAC	6 cut(s)	921, 1318, 1682, 2009, 2225, 2240
BslI	CCNNNNNNNGG	9 cut(s)	739, 815, 917, 971, 1130, 1620, 1929, 1950, 2013
BsmBI	CGTCTC	6 cut(s)	222, 354, 804, 2074, 2123, 2420
BsmFI	GGGAC	6 cut(s)	921, 1318, 1682, 2009, 2225, 2240
Bso31I	GGTCTC	1 cut(s)	503
Bsp120I	GGGCCC	1 cut(s)	2279
Bsp143I	GATC	6 cut(s)	306, 314, 720, 1708, 2351, 2463
Bsp1720I	GCTNAGC	4 cut(s)	132, 488, 1338, 1910
Bsp19I	CCATGG	1 cut(s)	1020
BspCNI	CTCAG	8 cut(s)	145, 163, 582, 896, 1057, 1330, 1741, 1923
BspDI	ATCGAT	1 cut(s)	1231
BspMAI	CTGCAG	1 cut(s)	1490
BspOI	GCTAGC	1 cut(s)	1760
BspPI	GGATC	2 cut(s)	728, 2359
BspQI	GCTCTTC	3 cut(s)	207, 699, 1736
BspT107I	GGYRCC	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	503
BsrBI	CCGCTC	2 cut(s)	923, 1734
BsrDI	GCAATG	2 cut(s)	2193, 2354
BsrFI	RCCGGY	5 cut(s)	32, 341, 964, 1832, 2170
BsrI	ACTGG	6 cut(s)	108, 1180, 1367, 1666, 1937, 2385
BssAI	RCCGGY	5 cut(s)	32, 341, 964, 1832, 2170
BssHII	GCGCGC	2 cut(s)	1629, 2472
BssMI	GATC	6 cut(s)	306, 314, 720, 1708, 2351, 2463
BssNI	GRCGYC	3 cut(s)	339, 363, 1851
BssSI	CACGAG	1 cut(s)	1097
BssT1I	CCWWGG	4 cut(s)	1020, 1539, 2043, 2056
Bst2BI	CACGAG	1 cut(s)	1097
Bst2UI	CCWGG	2 cut(s)	1899, 2051
Bst6I	CTCTTC	4 cut(s)	207, 389, 699, 1736
BstACI	GRCGYC	3 cut(s)	339, 363, 1851
BstAPI	GCANNNNNTGC	2 cut(s)	666, 1522
BstBAI	YACGTR	2 cut(s)	2194, 2224
BstDSI	CCRYGG	3 cut(s)	366, 1020, 2412
BstF5I	GGATG	8 cut(s)	460, 643, 748, 882, 1030, 1438, 1449, 1998
BstH2I	RGCGCY	2 cut(s)	342, 2231
BstKTI	GATC	6 cut(s)	309, 317, 723, 1711, 2354, 2466
BstMBI	GATC	6 cut(s)	306, 314, 720, 1708, 2351, 2463
BstNI	CCWGG	2 cut(s)	1899, 2051
BstNSI	RCATGY	7 cut(s)	628, 943, 1337, 1409, 1562, 1750, 2116
BstSFI	CTRYAG	1 cut(s)	1486
BstSLI	GKGCMC	6 cut(s)	458, 766, 1321, 1471, 1812, 2283
BstV1I	GCAGC	8 cut(s)	333, 430, 721, 1414, 1774, 1928, 2217, 2220
BstV2I	GAAGAC	1 cut(s)	563
BstX2I	RGATCY	1 cut(s)	314
BstXI	CCANNNNNNTGG	1 cut(s)	1297
BstYI	RGATCY	1 cut(s)	314
Bsu15I	ATCGAT	1 cut(s)	1231
BsuI	GTATCC	1 cut(s)	1447
BsuTUI	ATCGAT	1 cut(s)	1231
BtgI	CCRYGG	3 cut(s)	366, 1020, 2412
BtgZI	GCGATG	4 cut(s)	112, 366, 1986, 2023
BtrI	CACGTC	1 cut(s)	2133
BtsCI	GGATG	8 cut(s)	460, 643, 748, 882, 1030, 1438, 1449, 1998
BtsI	GCAGTG	2 cut(s)	824, 1431
BtsIMutI	CAGTG	5 cut(s)	824, 891, 1275, 1431, 1673
CaiI	CAGNNNCTG	1 cut(s)	2380
Cfr10I	RCCGGY	5 cut(s)	32, 341, 964, 1832, 2170
Cfr42I	CCGCGG	1 cut(s)	369
ClaI	ATCGAT	1 cut(s)	1231
CpoI	CGGWCCG	1 cut(s)	2264
CseI	GACGC	7 cut(s)	239, 371, 1646, 1788, 1967, 2056, 2150
Csp6I	GTAC	5 cut(s)	30, 1105, 1567, 1594, 2164
CspCI	CAANNNNNGTGG	4 cut(s)	948, 983, 2175, 2210
CspI	CGGWCCG	1 cut(s)	2264
CviQI	GTAC	5 cut(s)	30, 1105, 1567, 1594, 2164
DinI	GGCGCC	1 cut(s)	340
DpnI	GATC	6 cut(s)	308, 316, 722, 1710, 2353, 2465
DpnII	GATC	6 cut(s)	306, 314, 720, 1708, 2351, 2463
DraIII	CACNNNGTG	1 cut(s)	2197
DrdI	GACNNNNNNGTC	2 cut(s)	1850, 2416
DseDI	GACNNNNNNGTC	2 cut(s)	1850, 2416
EaeI	YGGCCR	2 cut(s)	678, 1014
Eam1104I	CTCTTC	4 cut(s)	207, 389, 699, 1736
EarI	CTCTTC	4 cut(s)	207, 389, 699, 1736
EciI	GGCGGA	4 cut(s)	240, 260, 2306, 2346
Ecl136II	GAGCTC	3 cut(s)	433, 847, 882
Eco130I	CCWWGG	4 cut(s)	1020, 1539, 2043, 2056
Eco24I	GRGCYC	4 cut(s)	435, 849, 884, 2283
Eco31I	GGTCTC	1 cut(s)	503
Eco47I	GGWCC	6 cut(s)	674, 806, 908, 990, 2053, 2264
Eco53kI	GAGCTC	3 cut(s)	433, 847, 882
Eco57I	CTGAAG	2 cut(s)	188, 1772
Eco72I	CACGTG	1 cut(s)	2194
EcoICRI	GAGCTC	3 cut(s)	433, 847, 882
EcoO109I	RGGNCCY	2 cut(s)	818, 908
EcoRII	CCWGG	2 cut(s)	1897, 2049
EcoT14I	CCWWGG	4 cut(s)	1020, 1539, 2043, 2056
EcoT22I	ATGCAT	1 cut(s)	1335
EcoT38I	GRGCYC	4 cut(s)	435, 849, 884, 2283
EgeI	GGCGCC	1 cut(s)	340
EheI	GGCGCC	1 cut(s)	340
ErhI	CCWWGG	4 cut(s)	1020, 1539, 2043, 2056
Esp3I	CGTCTC	6 cut(s)	222, 354, 804, 2074, 2123, 2420
FaqI	GGGAC	6 cut(s)	921, 1318, 1682, 2009, 2225, 2240
FauI	CCCGC	9 cut(s)	269, 423, 916, 964, 1708, 1727, 2140, 2279, 2296
FbaI	TGATCA	1 cut(s)	1708
FblI	GTMKAC	3 cut(s)	890, 1443, 1802
FokI	GGATG	8 cut(s)	447, 650, 755, 889, 1037, 1436, 1445, 1985
FriOI	GRGCYC	4 cut(s)	435, 849, 884, 2283
FspBI	CTAG	6 cut(s)	120, 803, 1001, 1167, 1308, 1757
GsaI	CCCAGC	1 cut(s)	1791
GsuI	CTGGAG	3 cut(s)	863, 1259, 1637
HaeII	RGCGCY	2 cut(s)	342, 2231
HgaI	GACGC	7 cut(s)	239, 371, 1646, 1788, 1967, 2056, 2150
Hin1I	GRCGYC	3 cut(s)	339, 363, 1851
HincII	GTYRAC	6 cut(s)	1381, 1444, 1803, 2386, 2409, 2434
HindII	GTYRAC	6 cut(s)	1381, 1444, 1803, 2386, 2409, 2434
HindIII	AAGCTT	1 cut(s)	608
HpaI	GTTAAC	1 cut(s)	2434
HphI	GGTGA	4 cut(s)	151, 174, 2209, 2356
Hpy188I	TCNGA	9 cut(s)	207, 851, 920, 1047, 1092, 1218, 1454, 1731, 2376
Hpy188III	TCNNGA	8 cut(s)	20, 290, 464, 506, 842, 1001, 1097, 2458
HpyAV	CCTTC	5 cut(s)	350, 489, 1067, 1509, 2293
HpyCH4IV	ACGT	7 cut(s)	270, 1839, 1851, 2132, 2193, 2223, 2369
HpySE526I	ACGT	7 cut(s)	270, 1839, 1851, 2132, 2193, 2223, 2369
Hsp92I	GRCGYC	3 cut(s)	339, 363, 1851
KasI	GGCGCC	1 cut(s)	338
KroI	GCCGGC	2 cut(s)	341, 1832
KroNI	GCCGGC	2 cut(s)	343, 1834
Ksp22I	TGATCA	1 cut(s)	1708
KspAI	GTTAAC	1 cut(s)	2434
KspI	CCGCGG	1 cut(s)	369
Kzo9I	GATC	6 cut(s)	306, 314, 720, 1708, 2351, 2463
LguI	GCTCTTC	3 cut(s)	207, 699, 1736
LmnI	GCTCC	8 cut(s)	350, 484, 844, 920, 1500, 1938, 1986, 2481
Lsp1109I	GCAGC	8 cut(s)	333, 430, 721, 1414, 1774, 1928, 2217, 2220
LweI	GCATC	4 cut(s)	628, 721, 1320, 2145
MaeI	CTAG	6 cut(s)	120, 803, 1001, 1167, 1308, 1757
MaeII	ACGT	7 cut(s)	270, 1839, 1851, 2132, 2193, 2223, 2369
MaeIII	GTNAC	7 cut(s)	145, 377, 1153, 1532, 1543, 2318, 2324
MalI	GATC	6 cut(s)	308, 316, 722, 1710, 2353, 2465
MbiI	CCGCTC	2 cut(s)	923, 1734
MboI	GATC	6 cut(s)	306, 314, 720, 1708, 2351, 2463
MboII	GAAGA	7 cut(s)	194, 403, 406, 568, 716, 1753, 2473
MflI	RGATCY	1 cut(s)	314
MluCI	AATT	5 cut(s)	250, 654, 1284, 1459, 1960
Mly113I	GGCGCC	1 cut(s)	339
MlyI	GAGTC	6 cut(s)	295, 553, 1207, 1217, 2207, 2426
MmeI	TCCRAC	1 cut(s)	2031
Mph1103I	ATGCAT	1 cut(s)	1335
MroNI	GCCGGC	2 cut(s)	341, 1832
MseI	TTAA	2 cut(s)	737, 2433
MslI	CAYNNNNRTG	2 cut(s)	110, 465
MspA1I	CMGCKG	2 cut(s)	368, 1293
MvaI	CCWGG	2 cut(s)	1899, 2051
NaeI	GCCGGC	2 cut(s)	343, 1834
NarI	GGCGCC	1 cut(s)	339
NciI	CCSGG	8 cut(s)	186, 514, 755, 772, 1887, 2258, 2268, 2283
NcoI	CCATGG	1 cut(s)	1020
NdeII	GATC	6 cut(s)	306, 314, 720, 1708, 2351, 2463
NgoMIV	GCCGGC	2 cut(s)	341, 1832
NheI	GCTAGC	1 cut(s)	1756
NmeAIII	GCCGAG	2 cut(s)	855, 1435
NmuCI	GTSAC	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	1335
NspI	RCATGY	7 cut(s)	628, 943, 1337, 1409, 1562, 1750, 2116
PaeI	GCATGC	6 cut(s)	943, 1337, 1409, 1562, 1750, 2116
PauI	GCGCGC	2 cut(s)	1629, 2472
PciI	ACATGT	1 cut(s)	624
PciSI	GCTCTTC	3 cut(s)	207, 699, 1736
PcsI	WCGNNNNNNNCGW	3 cut(s)	1836, 1887, 2246
PdiI	GCCGGC	2 cut(s)	343, 1834
PfeI	GAWTC	4 cut(s)	54, 1087, 1093, 1228
PfoI	TCCNGGA	1 cut(s)	2256
PleI	GAGTC	6 cut(s)	294, 553, 1207, 1217, 2207, 2425
PluTI	GGCGCC	1 cut(s)	342
PmaCI	CACGTG	1 cut(s)	2194
PmlI	CACGTG	1 cut(s)	2194
PpsI	GAGTC	6 cut(s)	294, 553, 1207, 1217, 2207, 2425
Ppu21I	YACGTR	2 cut(s)	2194, 2224
PpuMI	RGGWCCY	1 cut(s)	908
PscI	ACATGT	1 cut(s)	624
PsiI	TTATAA	1 cut(s)	75
Psp124BI	GAGCTC	3 cut(s)	435, 849, 884
Psp5II	RGGWCCY	1 cut(s)	908
Psp6I	CCWGG	2 cut(s)	1897, 2049
PspCI	CACGTG	1 cut(s)	2194
PspFI	CCCAGC	1 cut(s)	1787
PspGI	CCWGG	2 cut(s)	1897, 2049
PspOMI	GGGCCC	1 cut(s)	2279
PspPPI	RGGWCCY	1 cut(s)	908
PstI	CTGCAG	1 cut(s)	1490
PstNI	CAGNNNCTG	1 cut(s)	2380
PsuI	RGATCY	1 cut(s)	314
PteI	GCGCGC	2 cut(s)	1629, 2472
RsaI	GTAC	5 cut(s)	31, 1106, 1568, 1595, 2165
RsaNI	GTAC	5 cut(s)	30, 1105, 1567, 1594, 2164
RseI	CAYNNNNRTG	2 cut(s)	110, 465
Rsr2I	CGGWCCG	1 cut(s)	2264
RsrII	CGGWCCG	1 cut(s)	2264
SacI	GAGCTC	3 cut(s)	435, 849, 884
SacII	CCGCGG	1 cut(s)	369
SalI	GTCGAC	2 cut(s)	1442, 1801
SapI	GCTCTTC	3 cut(s)	207, 699, 1736
SaqAI	TTAA	2 cut(s)	737, 2433
Sau3AI	GATC	6 cut(s)	306, 314, 720, 1708, 2351, 2463
SchI	GAGTC	6 cut(s)	295, 553, 1207, 1217, 2207, 2426
SfaNI	GCATC	4 cut(s)	628, 721, 1320, 2145
SfcI	CTRYAG	1 cut(s)	1486
SfoI	GGCGCC	1 cut(s)	340
Sfr303I	CCGCGG	1 cut(s)	369
SgrAI	CRCCGGYG	1 cut(s)	2170
SgrBI	CCGCGG	1 cut(s)	369
SgrDI	CGTCGACG	1 cut(s)	1801
SinI	GGWCC	6 cut(s)	674, 806, 908, 990, 2053, 2264
SmiMI	CAYNNNNRTG	2 cut(s)	110, 465
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SphI	GCATGC	6 cut(s)	943, 1337, 1409, 1562, 1750, 2116
Sse9I	AATT	5 cut(s)	250, 654, 1284, 1459, 1960
SspDI	GGCGCC	1 cut(s)	338
SspMI	CTAG	6 cut(s)	120, 803, 1001, 1167, 1308, 1757
SstI	GAGCTC	3 cut(s)	435, 849, 884
StyI	CCWWGG	4 cut(s)	1020, 1539, 2043, 2056
TaiI	ACGT	7 cut(s)	273, 1842, 1854, 2135, 2196, 2226, 2372
TaqII	GACCGA	1 cut(s)	1915
TasI	AATT	5 cut(s)	250, 654, 1284, 1459, 1960
TatI	WGTACW	1 cut(s)	1104
TauI	GCSGC	6 cut(s)	236, 368, 789, 1019, 1897, 2147
TfiI	GAWTC	4 cut(s)	54, 1087, 1093, 1228
Tru1I	TTAA	2 cut(s)	737, 2433
Tru9I	TTAA	2 cut(s)	737, 2433
TscAI	CASTG	5 cut(s)	831, 891, 1282, 1431, 1673
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	8 cut(s)	321, 418, 709, 1402, 1762, 1916, 2230, 2233
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	4 cut(s)	369, 569, 2108, 2216
TspGWI	ACGGA	4 cut(s)	234, 1361, 1429, 2220
TspRI	CASTG	5 cut(s)	831, 891, 1282, 1431, 1673
VneI	GTGCAC	4 cut(s)	762, 1317, 1467, 1808
VpaK11BI	GGWCC	6 cut(s)	674, 806, 908, 990, 2053, 2264
XapI	RAATTY	1 cut(s)	250
XbaI	TCTAGA	1 cut(s)	1000
XceI	RCATGY	7 cut(s)	628, 943, 1337, 1409, 1562, 1750, 2116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1873
XmiI	GTMKAC	3 cut(s)	890, 1443, 1802
XspI	CTAG	6 cut(s)	120, 803, 1001, 1167, 1308, 1757
ZraI	GACGTC	1 cut(s)	1852
Zsp2I	ATGCAT	1 cut(s)	1335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.