Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8513183.1

Orthogroup ID

OG0008368

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4024

Gene Structure 4024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8513183.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2025 bp

accaccaccaccaccaccacaacgccaaccacaccagtatgccctctagtgcaatcgctcagcctcgactcgtgactcagtctctcaccaaatcaatgttcaacaactcaccaggcctctcactcgctcttcagactaatgccgacggaggcggagacgcgccgagaatgcctgagaatttcgagccgaataataacgtcggcgggcggaggagccgggaggaggagaacgagatcagtagatctggcagcgataacatggacggcgccggctccggcgacgaaggagacgccgcggataacagcaaccctcgtaagaagaagagataccaccgacacaccccgcagcaaatccaagagctcgaagcgttattcaaggagtgccctcatcctgatgagaagcaaaggttggagcttagcagaaggctaaatcttgagacccggcaagtcaagttctggttccaaaatcgccgaacccagatgaagactcaacttgaacggcatgagaactctttgctgaggcaagagaacgataagcttcgagccgaaaacatgtccatcagggatgccatgaggaacccaatttgcacaaactgcggcggtccggccatgataggcgatatttctattgaagagcaacatctcaggattgacaatgcccgattaaaggacgagttagaccgggtttgtgcacttgccggcaagttcttgggccgcccaatttcgtctctaggtccatcaatggggcctccactgccgagttcagctctagaactcggagttgggaacaatgggttcggtgggatgagctcagttgctacaacaatgccattgggacctgatttcggggcggggcttggaggtggcatgccgattgtggctcacactaggccggtggcgggagggctcgacgagaggactatgtttttggagctagctttggccgccatggatgagcttgtgaagctggctcagactgatgagctttggctgaggagcttggaaggtgggagagaggtgctgaatcacgaggagtacatgaggagtttcacgccttgcattgggttgaagcctaatggctttgttaccgaggcttctagggagactggtatggtcatcatcaacagtttggctctggttgagactctgatggactcgaatcgatggttggagatgtttccttgtatgattgccagaacttctaccactgatgtgatttccagcggtatgggagggactagaaatggtgcacttcaactgatgcatgctgagcttcaagtcctatcgcctttggttccagtccgtgaggtcaacttcctccgcttctgcaagcagcacgccgagggtgtgtgggcggtggtggatgtgtccgtcgacacaatcagagacaattctggtgcacccacatttgtaaactgcaggaggctcccttctggctgtgttgtacaagatatgcctaatggttactccaaggttacatgggttgagcatgcagagtacgacgagagccaagtccaccacctgtaccgacccttgttaagttccggcatggggttcggcgcgcagaggtgggtcgccaccctccagcgccaatgccagtgcctcgctatcctcatgtcctccacggtcccggcccgcgaccacgccaataccatcactcagagcgggaggaagagcatgttgaagctggcgcagcgaatgactgacaacttctgcgccggggtctgcgcctcgacggtccacaaatggaacaagctgcacgccggcaacgtggacgaggacgtccgctacatgaccagagagagcatggacgaccccggcgagccgccgggcattgtgctcagcgctgccacttcggtctggctcccagtctccccacaaagactcttcaatttcttgcgcgacgagcgactcaggagcgagtgggacatcctctccaacggtgggcccatgcaggagatggcccacatcgccaagggccaggaccaaggcaactgcgtctccctcctccgcgccagagtgagct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042335 GO:0042545 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0045229 GO:0045595 GO:0045596 GO:0048364 GO:0048367 GO:0048437 GO:0048468 GO:0048469 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090627 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

674

Amino Acids

74.54

Weight (kDa)

6.39

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61150 AT4G00730 AT4G00730
fragaria_vesca	FvH4_7g13350 FvH4_7g13350
malus_domestica	MD01G1050200.v1.1 MD07G1127600.v1.1
prunus_persica	Prupe.2G156900_v2.0.a1 Prupe.2G156900_v2.0.a1
pyrus_communis	pycom01g07490 pycom07g12270
rosa_chinensis	RchiOBHm_Chr1g0352671
rosa_laevigata	RLG00000028322
rosa_multiflora	Rmu_co8513183.1_g000001 Rmu_sc0005118.1_g000003
rosa_roxburghii	Rroxscaffold_4G00302500
rosa_rugosa	Rorug01G0230700 Rorug01G0230800 Rorug01G0230900
rosa_samantha	Rh1AG243900 Rh1BG214500 Rh1CG227900 Rh1DG240600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1780
AatII	GACGTC	1 cut(s)	1784
AccB1I	GGYRCC	1 cut(s)	265
AccBSI	CCGCTC	1 cut(s)	1664
AccI	GTMKAC	1 cut(s)	1373
AccII	CGCG	6 cut(s)	160, 295, 1561, 1637, 1901, 2012
AcoI	YGGCCR	2 cut(s)	605, 941
AcsI	RAATTY	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	115
AcyI	GRCGYC	3 cut(s)	266, 290, 1781
AfaI	GTAC	4 cut(s)	1036, 1445, 1498, 1525
AfeI	AGCGCT	1 cut(s)	1845
AfiI	CCNNNNNNNGG	8 cut(s)	222, 666, 742, 844, 898, 1060, 1550, 1943
AflIII	ACRYGT	1 cut(s)	551
AgsI	TTSAA	9 cut(s)	102, 375, 496, 631, 1068, 1255, 1276, 1683, 1890
AjnI	CCWGG	2 cut(s)	111, 1979
AjuI	GAANNNNNNNTTGG	8 cut(s)	82, 114, 391, 423, 764, 796, 1150, 1182
AleI	CACNNNNGTG	1 cut(s)	1210
Alw21I	GWGCWC	6 cut(s)	362, 693, 811, 1251, 1401, 1841
Alw44I	GTGCAC	3 cut(s)	689, 1247, 1397
Aor51HI	AGCGCT	1 cut(s)	1845
ApaI	GGGCCC	1 cut(s)	1949
ApaLI	GTGCAC	3 cut(s)	689, 1247, 1397
ApeKI	GCWGC	6 cut(s)	248, 345, 1332, 1692, 1755, 1846
ApoI	RAATTY	1 cut(s)	177
ArsI	GACNNNNNNTTYG	2 cut(s)	909, 941
AsuC2I	CCSGG	7 cut(s)	217, 441, 682, 1630, 1719, 1817, 1829
AsuHPI	GGTGA	2 cut(s)	78, 101
AsuNHI	GCTAGC	1 cut(s)	933
AvaII	GGWCC	6 cut(s)	601, 733, 835, 1626, 1737, 1983
BaeGI	GKGCMC	5 cut(s)	385, 693, 1251, 1401, 1949
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	4 cut(s)	362, 811, 908, 1949
BarI	GAAGNNNNNNTAC	2 cut(s)	310, 342
BauI	CACGAG	2 cut(s)	70, 1027
BbsI	GAAGAC	1 cut(s)	490
Bbv12I	GWGCWC	6 cut(s)	362, 693, 811, 1251, 1401, 1841
BbvCI	CCTCAGC	2 cut(s)	517, 991
BbvI	GCAGC	6 cut(s)	260, 357, 1344, 1704, 1742, 1833
BccI	CCATC	6 cut(s)	565, 744, 1143, 1157, 1660, 1953
BceAI	ACGGC	2 cut(s)	279, 514
BcgI	CGANNNNNNTGC	2 cut(s)	1536, 1570
BciT130I	CCWGG	2 cut(s)	113, 1981
BcnI	CCSGG	7 cut(s)	217, 441, 682, 1630, 1719, 1817, 1829
BfaI	CTAG	7 cut(s)	47, 730, 769, 887, 934, 1097, 1238
BfmI	CTRYAG	1 cut(s)	1416
BfoI	RGCGCY	3 cut(s)	269, 1590, 1847
BglII	AGATCT	1 cut(s)	241
BlpI	GCTNAGC	4 cut(s)	59, 415, 1268, 1840
Bme1390I	CCNGG	9 cut(s)	113, 217, 441, 682, 1630, 1719, 1817, 1829, 1981
Bme18I	GGWCC	6 cut(s)	601, 733, 835, 1626, 1737, 1983
BmrFI	CCNGG	9 cut(s)	113, 217, 441, 682, 1630, 1719, 1817, 1829, 1981
BmrI	ACTGGG	1 cut(s)	1861
BmsI	GCATC	2 cut(s)	555, 1250
BmtI	GCTAGC	1 cut(s)	937
BmuI	ACTGGG	1 cut(s)	1861
BpiI	GAAGAC	1 cut(s)	490
BplI	GAGNNNNNCTC	2 cut(s)	750, 782
BpmI	CTGGAG	1 cut(s)	1567
Bpu10I	CCTNAGC	2 cut(s)	517, 991
Bpu1102I	GCTNAGC	4 cut(s)	59, 415, 1268, 1840
BpuEI	CTTGAG	1 cut(s)	454
BpuMI	CCSGG	7 cut(s)	217, 441, 682, 1630, 1719, 1817, 1829
Bsa29I	ATCGAT	1 cut(s)	1161
BsaHI	GRCGYC	3 cut(s)	266, 290, 1781
BsaI	GGTCTC	1 cut(s)	430
BsaXI	ACNNNNNCTCC	4 cut(s)	1918, 1948, 1984, 2014
Bsc4I	CCNNNNNNNGG	8 cut(s)	222, 666, 742, 844, 898, 1060, 1550, 1943
Bse118I	RCCGGY	4 cut(s)	268, 697, 891, 1762
Bse1I	ACTGG	5 cut(s)	35, 1110, 1297, 1596, 1867
BseBI	CCWGG	2 cut(s)	113, 1981
BseCI	ATCGAT	1 cut(s)	1161
BseGI	GGATG	6 cut(s)	387, 570, 809, 957, 1368, 1928
BseLI	CCNNNNNNNGG	8 cut(s)	222, 666, 742, 844, 898, 1060, 1550, 1943
BseNI	ACTGG	5 cut(s)	35, 1110, 1297, 1596, 1867
BsePI	GCGCGC	1 cut(s)	1559
BseRI	GAGGAG	7 cut(s)	225, 235, 238, 1008, 1045, 1056, 1996
BseSI	GKGCMC	5 cut(s)	385, 693, 1251, 1401, 1949
BseXI	GCAGC	6 cut(s)	260, 357, 1344, 1704, 1742, 1833
BsgI	GTGCAG	1 cut(s)	1741
Bsh1236I	CGCG	6 cut(s)	160, 295, 1561, 1637, 1901, 2012
BshNI	GGYRCC	1 cut(s)	265
BshVI	ATCGAT	1 cut(s)	1161
BsiHKAI	GWGCWC	6 cut(s)	362, 693, 811, 1251, 1401, 1841
BslFI	GGGAC	4 cut(s)	848, 1248, 1612, 1939
BslI	CCNNNNNNNGG	8 cut(s)	222, 666, 742, 844, 898, 1060, 1550, 1943
BsmBI	CGTCTC	4 cut(s)	149, 281, 731, 2004
BsmFI	GGGAC	4 cut(s)	848, 1248, 1612, 1939
BsmI	GAATGC	1 cut(s)	173
Bso31I	GGTCTC	1 cut(s)	430
Bsp120I	GGGCCC	1 cut(s)	1945
Bsp1286I	GDGCHC	9 cut(s)	362, 385, 693, 811, 908, 1251, 1401, 1841, 1949
Bsp1407I	TGTACA	1 cut(s)	1443
Bsp143I	GATC	2 cut(s)	233, 241
Bsp1720I	GCTNAGC	4 cut(s)	59, 415, 1268, 1840
Bsp19I	CCATGG	1 cut(s)	947
BspDI	ATCGAT	1 cut(s)	1161
BspFNI	CGCG	6 cut(s)	160, 295, 1561, 1637, 1901, 2012
BspMAI	CTGCAG	1 cut(s)	1420
BspOI	GCTAGC	1 cut(s)	937
BspQI	GCTCTTC	3 cut(s)	134, 626, 1666
BspT107I	GGYRCC	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	430
BsrBI	CCGCTC	1 cut(s)	1664
BsrFI	RCCGGY	4 cut(s)	268, 697, 891, 1762
BsrGI	TGTACA	1 cut(s)	1443
BsrI	ACTGG	5 cut(s)	35, 1110, 1297, 1596, 1867
BssAI	RCCGGY	4 cut(s)	268, 697, 891, 1762
BssHII	GCGCGC	1 cut(s)	1559
BssMI	GATC	2 cut(s)	233, 241
BssNI	GRCGYC	3 cut(s)	266, 290, 1781
BssSI	CACGAG	2 cut(s)	70, 1027
BssT1I	CCWWGG	4 cut(s)	947, 1469, 1973, 1986
Bst2BI	CACGAG	2 cut(s)	70, 1027
Bst2UI	CCWGG	2 cut(s)	113, 1981
Bst4CI	ACNGT	4 cut(s)	1126, 1626, 1737, 1942
Bst6I	CTCTTC	5 cut(s)	134, 316, 626, 1666, 1891
BstACI	GRCGYC	3 cut(s)	266, 290, 1781
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstAUI	TGTACA	1 cut(s)	1443
BstDSI	CCRYGG	3 cut(s)	293, 947, 1622
BstF5I	GGATG	6 cut(s)	387, 570, 809, 957, 1368, 1928
BstFNI	CGCG	6 cut(s)	160, 295, 1561, 1637, 1901, 2012
BstH2I	RGCGCY	3 cut(s)	269, 1590, 1847
BstKTI	GATC	2 cut(s)	236, 244
BstMBI	GATC	2 cut(s)	233, 241
BstMWI	GCNNNNNNNGC	9 cut(s)	168, 593, 753, 943, 963, 1269, 1692, 1905, 1969
BstNI	CCWGG	2 cut(s)	113, 1981
BstNSI	RCATGY	5 cut(s)	555, 870, 1267, 1492, 1680
BstSCI	CCNGG	9 cut(s)	111, 215, 439, 680, 1628, 1717, 1815, 1827, 1979
BstSFI	CTRYAG	1 cut(s)	1416
BstSLI	GKGCMC	5 cut(s)	385, 693, 1251, 1401, 1949
BstUI	CGCG	6 cut(s)	160, 295, 1561, 1637, 1901, 2012
BstV1I	GCAGC	6 cut(s)	260, 357, 1344, 1704, 1742, 1833
BstV2I	GAAGAC	1 cut(s)	490
BstX2I	RGATCY	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	1227
BstYI	RGATCY	1 cut(s)	241
Bsu15I	ATCGAT	1 cut(s)	1161
BsuTUI	ATCGAT	1 cut(s)	1161
BtgI	CCRYGG	3 cut(s)	293, 947, 1622
BtgZI	GCGATG	1 cut(s)	1953
BtsCI	GGATG	6 cut(s)	387, 570, 809, 957, 1368, 1928
BtsI	GCAGTG	1 cut(s)	751
BtsIMutI	CAGTG	3 cut(s)	751, 1205, 1603
Cfr10I	RCCGGY	4 cut(s)	268, 697, 891, 1762
Cfr42I	CCGCGG	1 cut(s)	296
ClaI	ATCGAT	1 cut(s)	1161
CpoI	CGGWCCG	1 cut(s)	601
CseI	GACGC	3 cut(s)	166, 298, 1986
Csp6I	GTAC	4 cut(s)	1035, 1444, 1497, 1524
CspI	CGGWCCG	1 cut(s)	601
CviQI	GTAC	4 cut(s)	1035, 1444, 1497, 1524
DinI	GGCGCC	1 cut(s)	267
DpnI	GATC	2 cut(s)	235, 243
DpnII	GATC	2 cut(s)	233, 241
DrdI	GACNNNNNNGTC	1 cut(s)	1780
DseDI	GACNNNNNNGTC	1 cut(s)	1780
EaeI	YGGCCR	2 cut(s)	605, 941
Eam1104I	CTCTTC	5 cut(s)	134, 316, 626, 1666, 1891
EarI	CTCTTC	5 cut(s)	134, 316, 626, 1666, 1891
EciI	GGCGGA	2 cut(s)	167, 222
Ecl136II	GAGCTC	2 cut(s)	360, 809
Eco130I	CCWWGG	4 cut(s)	947, 1469, 1973, 1986
Eco147I	AGGCCT	1 cut(s)	116
Eco24I	GRGCYC	4 cut(s)	362, 811, 908, 1949
Eco31I	GGTCTC	1 cut(s)	430
Eco47I	GGWCC	6 cut(s)	601, 733, 835, 1626, 1737, 1983
Eco47III	AGCGCT	1 cut(s)	1845
Eco53kI	GAGCTC	2 cut(s)	360, 809
Eco57I	CTGAAG	1 cut(s)	115
EcoICRI	GAGCTC	2 cut(s)	360, 809
EcoO109I	RGGNCCY	2 cut(s)	745, 835
EcoRII	CCWGG	2 cut(s)	111, 1979
EcoT14I	CCWWGG	4 cut(s)	947, 1469, 1973, 1986
EcoT22I	ATGCAT	1 cut(s)	1265
EcoT38I	GRGCYC	4 cut(s)	362, 811, 908, 1949
EgeI	GGCGCC	1 cut(s)	267
EheI	GGCGCC	1 cut(s)	267
ErhI	CCWWGG	4 cut(s)	947, 1469, 1973, 1986
Esp3I	CGTCTC	4 cut(s)	149, 281, 731, 2004
FaqI	GGGAC	4 cut(s)	848, 1248, 1612, 1939
FauI	CCCGC	6 cut(s)	196, 350, 843, 891, 1642, 1657
FblI	GTMKAC	1 cut(s)	1373
FokI	GGATG	6 cut(s)	374, 577, 816, 964, 1375, 1915
FriOI	GRGCYC	4 cut(s)	362, 811, 908, 1949
FspBI	CTAG	7 cut(s)	47, 730, 769, 887, 934, 1097, 1238
GsuI	CTGGAG	1 cut(s)	1567
HaeII	RGCGCY	3 cut(s)	269, 1590, 1847
HgaI	GACGC	3 cut(s)	166, 298, 1986
Hin1I	GRCGYC	3 cut(s)	266, 290, 1781
HincII	GTYRAC	2 cut(s)	1311, 1374
HindII	GTYRAC	2 cut(s)	1311, 1374
HindIII	AAGCTT	1 cut(s)	535
HinfI	GANTC	9 cut(s)	68, 75, 486, 1023, 1143, 1153, 1158, 1883, 1910
HphI	GGTGA	2 cut(s)	78, 101
Hpy166II	GTNNAC	9 cut(s)	691, 1249, 1311, 1374, 1399, 1413, 1515, 1740, 1773
Hpy188I	TCNGA	6 cut(s)	134, 778, 974, 1148, 1384, 1661
Hpy188III	TCNNGA	7 cut(s)	72, 391, 433, 645, 769, 1027, 1914
Hpy8I	GTNNAC	9 cut(s)	691, 1249, 1311, 1374, 1399, 1413, 1515, 1740, 1773
Hpy99I	CGWCG	8 cut(s)	148, 202, 283, 913, 1375, 1504, 1737, 1906
HpyAV	CCTTC	4 cut(s)	277, 416, 997, 1439
HpyCH4III	ACNGT	4 cut(s)	1126, 1626, 1737, 1942
HpyCH4IV	ACGT	3 cut(s)	197, 1769, 1781
HpyF10VI	GCNNNNNNNGC	9 cut(s)	168, 593, 753, 943, 963, 1269, 1692, 1905, 1969
HpySE526I	ACGT	3 cut(s)	197, 1769, 1781
Hsp92I	GRCGYC	3 cut(s)	266, 290, 1781
KasI	GGCGCC	1 cut(s)	265
KroI	GCCGGC	3 cut(s)	268, 697, 1762
KroNI	GCCGGC	3 cut(s)	270, 699, 1764
KspI	CCGCGG	1 cut(s)	296
Kzo9I	GATC	2 cut(s)	233, 241
LguI	GCTCTTC	3 cut(s)	134, 626, 1666
LmnI	GCTCC	8 cut(s)	212, 277, 411, 930, 995, 1430, 1868, 1916
Lsp1109I	GCAGC	6 cut(s)	260, 357, 1344, 1704, 1742, 1833
LweI	GCATC	2 cut(s)	555, 1250
MaeI	CTAG	7 cut(s)	47, 730, 769, 887, 934, 1097, 1238
MaeII	ACGT	3 cut(s)	197, 1769, 1781
MaeIII	GTNAC	4 cut(s)	72, 1083, 1462, 1473
MalI	GATC	2 cut(s)	235, 243
MbiI	CCGCTC	1 cut(s)	1664
MboI	GATC	2 cut(s)	233, 241
MboII	GAAGA	7 cut(s)	121, 330, 333, 495, 643, 1683, 1878
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	9 cut(s)	362, 385, 693, 811, 908, 1251, 1401, 1841, 1949
MluCI	AATT	5 cut(s)	177, 581, 719, 1389, 1890
Mly113I	GGCGCC	1 cut(s)	266
MlyI	GAGTC	7 cut(s)	62, 69, 480, 1137, 1147, 1877, 1904
MmeI	TCCRAC	3 cut(s)	389, 1148, 1961
Mph1103I	ATGCAT	1 cut(s)	1265
MroNI	GCCGGC	3 cut(s)	268, 697, 1762
MseI	TTAA	2 cut(s)	664, 1537
MslI	CAYNNNNRTG	3 cut(s)	37, 392, 1210
MspA1I	CMGCKG	2 cut(s)	295, 1223
MspR9I	CCNGG	9 cut(s)	113, 217, 441, 682, 1630, 1719, 1817, 1829, 1981
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	2 cut(s)	113, 1981
MvnI	CGCG	6 cut(s)	160, 295, 1561, 1637, 1901, 2012
MwoI	GCNNNNNNNGC	9 cut(s)	168, 593, 753, 943, 963, 1269, 1692, 1905, 1969
NaeI	GCCGGC	3 cut(s)	270, 699, 1764
NarI	GGCGCC	1 cut(s)	266
NciI	CCSGG	7 cut(s)	217, 441, 682, 1630, 1719, 1817, 1829
NcoI	CCATGG	1 cut(s)	947
NdeII	GATC	2 cut(s)	233, 241
NgoMIV	GCCGGC	3 cut(s)	268, 697, 1762
NheI	GCTAGC	1 cut(s)	933
NmeAIII	GCCGAG	3 cut(s)	188, 782, 1365
NmuCI	GTSAC	1 cut(s)	72
NsiI	ATGCAT	1 cut(s)	1265
NspI	RCATGY	5 cut(s)	555, 870, 1267, 1492, 1680
OliI	CACNNNNGTG	1 cut(s)	1210
PaeI	GCATGC	3 cut(s)	870, 1267, 1492
PauI	GCGCGC	1 cut(s)	1559
PceI	AGGCCT	1 cut(s)	116
PciI	ACATGT	1 cut(s)	551
PciSI	GCTCTTC	3 cut(s)	134, 626, 1666
PcsI	WCGNNNNNNNCGW	2 cut(s)	1766, 1817
PctI	GAATGC	1 cut(s)	173
PdiI	GCCGGC	3 cut(s)	270, 699, 1764
PfeI	GAWTC	2 cut(s)	1023, 1158
PflFI	GACNNNGTC	1 cut(s)	78
PleI	GAGTC	7 cut(s)	62, 69, 480, 1137, 1147, 1877, 1904
PluTI	GGCGCC	1 cut(s)	269
PpsI	GAGTC	7 cut(s)	62, 69, 480, 1137, 1147, 1877, 1904
PpuMI	RGGWCCY	1 cut(s)	835
PscI	ACATGT	1 cut(s)	551
Psp124BI	GAGCTC	2 cut(s)	362, 811
Psp5II	RGGWCCY	1 cut(s)	835
Psp6I	CCWGG	2 cut(s)	111, 1979
PspGI	CCWGG	2 cut(s)	111, 1979
PspOMI	GGGCCC	1 cut(s)	1945
PspPPI	RGGWCCY	1 cut(s)	835
PstI	CTGCAG	1 cut(s)	1420
PsuI	RGATCY	1 cut(s)	241
PsyI	GACNNNGTC	1 cut(s)	78
PteI	GCGCGC	1 cut(s)	1559
RsaI	GTAC	4 cut(s)	1036, 1445, 1498, 1525
RsaNI	GTAC	4 cut(s)	1035, 1444, 1497, 1524
RseI	CAYNNNNRTG	3 cut(s)	37, 392, 1210
Rsr2I	CGGWCCG	1 cut(s)	601
RsrII	CGGWCCG	1 cut(s)	601
SacI	GAGCTC	2 cut(s)	362, 811
SacII	CCGCGG	1 cut(s)	296
SalI	GTCGAC	1 cut(s)	1372
SapI	GCTCTTC	3 cut(s)	134, 626, 1666
SaqAI	TTAA	2 cut(s)	664, 1537
Sau3AI	GATC	2 cut(s)	233, 241
SchI	GAGTC	7 cut(s)	62, 69, 480, 1137, 1147, 1877, 1904
ScrFI	CCNGG	9 cut(s)	113, 217, 441, 682, 1630, 1719, 1817, 1829, 1981
SduI	GDGCHC	9 cut(s)	362, 385, 693, 811, 908, 1251, 1401, 1841, 1949
SfaNI	GCATC	2 cut(s)	555, 1250
SfcI	CTRYAG	1 cut(s)	1416
SfoI	GGCGCC	1 cut(s)	267
Sfr303I	CCGCGG	1 cut(s)	296
SgrBI	CCGCGG	1 cut(s)	296
SinI	GGWCC	6 cut(s)	601, 733, 835, 1626, 1737, 1983
SmiMI	CAYNNNNRTG	3 cut(s)	37, 392, 1210
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
SphI	GCATGC	3 cut(s)	870, 1267, 1492
Sse9I	AATT	5 cut(s)	177, 581, 719, 1389, 1890
SseBI	AGGCCT	1 cut(s)	116
SspDI	GGCGCC	1 cut(s)	265
SspMI	CTAG	7 cut(s)	47, 730, 769, 887, 934, 1097, 1238
SstI	GAGCTC	2 cut(s)	362, 811
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	9 cut(s)	111, 215, 439, 680, 1628, 1717, 1815, 1827, 1979
StyI	CCWWGG	4 cut(s)	947, 1469, 1973, 1986
TaaI	ACNGT	4 cut(s)	1126, 1626, 1737, 1942
TaiI	ACGT	3 cut(s)	200, 1772, 1784
TaqI	TCGA	9 cut(s)	66, 182, 362, 540, 908, 1156, 1161, 1373, 1732
TaqII	GACCGA	1 cut(s)	1845
TasI	AATT	5 cut(s)	177, 581, 719, 1389, 1890
TatI	WGTACW	2 cut(s)	1034, 1443
TauI	GCSGC	5 cut(s)	295, 599, 716, 946, 1827
TfiI	GAWTC	2 cut(s)	1023, 1158
Tru1I	TTAA	2 cut(s)	664, 1537
Tru9I	TTAA	2 cut(s)	664, 1537
TscAI	CASTG	3 cut(s)	758, 1212, 1603
TseFI	GTSAC	1 cut(s)	72
TseI	GCWGC	6 cut(s)	248, 345, 1332, 1692, 1755, 1846
Tsp45I	GTSAC	1 cut(s)	72
TspDTI	ATGAA	1 cut(s)	496
TspGWI	ACGGA	3 cut(s)	161, 1291, 1359
TspRI	CASTG	3 cut(s)	758, 1212, 1603
Tth111I	GACNNNGTC	1 cut(s)	78
VneI	GTGCAC	3 cut(s)	689, 1247, 1397
VpaK11BI	GGWCC	6 cut(s)	601, 733, 835, 1626, 1737, 1983
XapI	RAATTY	1 cut(s)	177
XbaI	TCTAGA	1 cut(s)	768
XceI	RCATGY	5 cut(s)	555, 870, 1267, 1492, 1680
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1803, 1956
XmiI	GTMKAC	1 cut(s)	1373
XspI	CTAG	7 cut(s)	47, 730, 769, 887, 934, 1097, 1238
ZraI	GACGTC	1 cut(s)	1782
Zsp2I	ATGCAT	1 cut(s)	1265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.