Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0008368

Physical Location & Seq

Genomic Coordinates Forward (+)

33487019 .. 33493651

Gene Structure 6633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG214500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2247 bp

ATGGCTGAGAATTTCGAGGCGAATAATAACGTCGGCGGGCGGAGGAGCCGGGAGGAGGAGAACGAGATCAGTAGATCTGGCAGTGATAACATGGACGGCGCCGGCTCCGGCGACGAAGGAGACGCCGCGGATAACAGCAACCCTCGTAAGAAGAAAAGATACCACCGACACACCCCGCAGCAAATCCAAGAGCTCGAAGCGTTATTCAAGGAGTGCCCTCATCCTGATGAGAAGCAAAGGTTGGAGCTTAGCAGAAGGCTAAATCTTGAGACCCGGCAAGTCAAGTTCTGGTTCCAAAATCGCCGAACCCAGATGAAGACTCAACTTGAACGGCATGAGAACTCTTTGCTGAGGCAAGAGAACGATAAGCTTCGAGCCGAAAACATGTCCATCAGGGATGCCATGAGGAACCCAATTTGCACAAACTGCGGTGGTCCGGCCATGATAGGCGATATTTCTATTGAAGAGCAACATCTCAGGATTGACAATGCCCGATTAAAGGACGAGTTAGACCGGGTTTGTGCACTTGCCGGCAAGTTCTTGGGCCGCCCAATTTCGTCTCTTGGTCCATCAATGGGGCCGCCACTGCCGAGTTCAGCTCTAGAACTCGGAGTTGGGAACAATGGGTTCGGTGGGATGAGCTCAGTGGCTACAACAATGCCATTGGGACCCGATTTCGGAGCGGGGCTTGGGGGTGGCATGCCTATTGTGGCTCACAATAGGCCAGTGGCGGGAGGGCTCGACGAGAGGACTATGTTTTTGGAGCTAGCTTTGGCCGCCATGGATGAGCTTGTGAAGCTGGCTCAGACTGATGAGCCACTTTGGCTGAGGAGCTTGGAAGGTGGGAGAGAGGTGCTGAATCACGAGGAGTACATGAGGAGTTTCACGCCTTGCATTGGGTTGAAGCCTAATGGCTTTGTTACCGAGGCTTCTCGGGAGACTGGTATGGTCATCATCAACAGTTTGGCTCTGGTTGAGACTCTGATGGACTCGAATCGATGGCTGGAGATGTTTCCTTGTATGATTGCCAGAACTTCTACCACTGATGTGATTTCCAGCGGTATGGGAGGGACTAGAAATGGTGCACTTCAACTGATGCATGCTGAGCTTCAAGTCCTATCGCCTTTGGTTCCAGTCCGTGAGGTCAACTTCCTCCGCTTCTGCAAGCAGCACGCCGAGGGTGTGTGGGCGGTGGTGGATGTGTCCGTCGACACAATCAGAGACAATTCTGGTGCACCCACATTTGTAAACTGCAGGAGGCTCCCTTCTGGCTGTGTTGTACAAGATATGCCTAATGGTTACTCCAAGGTTACATGGGTTGAGCATGCAGAGTACGACGAGAGCCAAGTCCACCACCTGTACCGACCCTTGTTGAGTTCCGGCATGGGGTTCGGCGCGCAGAGGTGGGTCGCCACCCTCCAGCGCCAATGCCAGTGCCTCGCTATCCTCATGTCCTCCACGGTCCCGGCCCGTGACCACGCCAACACCATCACTCAGAGCGGGAGGAAGAGCATGTTGAAGCTGGCGCAGCGAATGACTGACAACTTCTGCGCCGGGGTCTGCGCCTCGACGGTCCACAAATGGAACAAGCTGCACGCCGGCAATGTGGACGAGGACGTCCGCTACATGACCAGAGAGAGCATGGACGACCCCGGCGAGCCGCCGGGCATTGTGCTCAGCGCTGCCACTTCGGTCTGGCTCCCAGTCTCCCCACAAAGGCTCTTTAATTTCTTGCGCGACGAGCGACTCAGGAGCGAGTGGGACATCCTCTCCAACGGTGGGCCCATGCAGGAGATGGCCCACATCGCCAAGGGCCAGGACCAAGGAAACTGCGTCTCTCTCCTCCGCGCCAGAGCCATGAACGCAAACCAAAACAGCATGCTGATATTACAAGAGACGTGCATCGACGCGGCCGGGTCGCTTGTGGTGTACGCGCCGGTGGATATTCCGGCCATGCACGTGGTGATGAACGGAGGGGACTCGGCCTACGTGGCGCTGCTGCCGTCGGGGTTCGCTATAGTCCCGGACGGGCCGGGCTCGCGTGGTTCGGAGGCCAAGGCGGGCCAGGGCAGCAGCAACGGCGGCGGTGAGGCCAGAGTGAGTGGGTCACTGTTAACGATGACGTTTCAGATATTGGTCAACAGTCTGCCGTCGGCGAAGTTGACCGTGGAGTCGGTGGAGACCGTCAACAATCTCATCTCCTGCACCGTTCAGAAGATCAAGGCCGCGCTCCAGTGCGAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042335 GO:0042545 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0045229 GO:0045595 GO:0045596 GO:0048364 GO:0048367 GO:0048437 GO:0048468 GO:0048469 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090627 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

748

Amino Acids

81.79

Weight (kDa)

5.86

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	51 - 106	1.5e-19	Homeodomain
START	PF01852	255 - 479	4e-54	START domain
PDF2_C	PF25797	499 - 746	1e-104	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61150 AT4G00730 AT4G00730
fragaria_vesca	FvH4_7g13350 FvH4_7g13350
malus_domestica	MD01G1050200.v1.1 MD07G1127600.v1.1
prunus_persica	Prupe.2G156900_v2.0.a1 Prupe.2G156900_v2.0.a1
pyrus_communis	pycom01g07490 pycom07g12270
rosa_chinensis	RchiOBHm_Chr1g0352671
rosa_laevigata	RLG00000028322
rosa_multiflora	Rmu_co8513183.1_g000001 Rmu_sc0005118.1_g000003
rosa_roxburghii	Rroxscaffold_4G00302500
rosa_rugosa	Rorug01G0230700 Rorug01G0230800 Rorug01G0230900
rosa_samantha	Rh1AG243900 Rh1BG214500 Rh1CG227900 Rh1DG240600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1616, 2170
AatII	GACGTC	1 cut(s)	1620
AccB1I	GGYRCC	1 cut(s)	98
AccBSI	CCGCTC	2 cut(s)	683, 1500
AccI	GTMKAC	1 cut(s)	1209
AccII	CGCG	8 cut(s)	128, 1397, 1737, 1848, 1910, 1934, 2041, 2228
AcoI	YGGCCR	4 cut(s)	438, 774, 1911, 1950
AcsI	RAATTY	1 cut(s)	10
AcvI	CACGTG	1 cut(s)	1960
AcyI	GRCGYC	3 cut(s)	99, 123, 1617
AdeI	CACNNNGTG	1 cut(s)	1963
AfaI	GTAC	5 cut(s)	872, 1281, 1334, 1361, 1931
AfeI	AGCGCT	1 cut(s)	1681
AfiI	CCNNNNNNNGG	9 cut(s)	55, 499, 575, 677, 731, 896, 1386, 1716, 1779
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	7 cut(s)	208, 329, 464, 904, 1091, 1112, 1519
AjiI	CACGTC	1 cut(s)	1899
AjnI	CCWGG	2 cut(s)	1815, 2064
AjuI	GAANNNNNNNTTGG	4 cut(s)	224, 256, 597, 629
AleI	CACNNNNGTG	1 cut(s)	1046
Alw21I	GWGCWC	6 cut(s)	195, 526, 644, 1087, 1237, 1677
Alw44I	GTGCAC	3 cut(s)	522, 1083, 1233
Ama87I	CYCGRG	1 cut(s)	933
Aor51HI	AGCGCT	1 cut(s)	1681
ApaI	GGGCCC	1 cut(s)	1785
ApaLI	GTGCAC	3 cut(s)	522, 1083, 1233
ApeKI	GCWGC	9 cut(s)	178, 1168, 1528, 1591, 1682, 1996, 1999, 2070, 2073
ApoI	RAATTY	1 cut(s)	10
ArsI	GACNNNNNNTTYG	2 cut(s)	742, 774
AsuHPI	GGTGA	2 cut(s)	1975, 2099
AsuNHI	GCTAGC	1 cut(s)	766
AvaI	CYCGRG	1 cut(s)	933
AvaII	GGWCC	6 cut(s)	434, 566, 668, 1462, 1573, 1819
BaeGI	GKGCMC	5 cut(s)	218, 526, 1087, 1237, 1785
BanI	GGYRCC	1 cut(s)	98
BanII	GRGCYC	5 cut(s)	195, 644, 741, 1785, 2039
BarI	GAAGNNNNNNTAC	2 cut(s)	143, 175
BauI	CACGAG	1 cut(s)	863
BbrPI	CACGTG	1 cut(s)	1960
BbsI	GAAGAC	1 cut(s)	323
Bbv12I	GWGCWC	6 cut(s)	195, 526, 644, 1087, 1237, 1677
BbvCI	CCTCAGC	2 cut(s)	350, 827
BbvI	GCAGC	9 cut(s)	190, 1180, 1540, 1578, 1669, 1983, 1986, 2082, 2085
BccI	CCATC	6 cut(s)	398, 577, 979, 993, 1496, 1789
BceAI	ACGGC	5 cut(s)	112, 347, 1987, 2095, 2134
BcgI	CGANNNNNNTGC	2 cut(s)	1372, 1406
BciT130I	CCWGG	2 cut(s)	1817, 2066
BfaI	CTAG	3 cut(s)	602, 767, 1074
BfmI	CTRYAG	2 cut(s)	1252, 2016
BfoI	RGCGCY	4 cut(s)	102, 1426, 1683, 1997
BglI	GCCNNNNNGGC	2 cut(s)	823, 1991
BglII	AGATCT	1 cut(s)	74
BlpI	GCTNAGC	3 cut(s)	248, 1104, 1676
Bme18I	GGWCC	6 cut(s)	434, 566, 668, 1462, 1573, 1819
BmeT110I	CYCGRG	1 cut(s)	933
BmgBI	CACGTC	1 cut(s)	1899
BmrI	ACTGGG	1 cut(s)	1697
BmsI	GCATC	3 cut(s)	388, 1086, 1911
BmtI	GCTAGC	1 cut(s)	770
BmuI	ACTGGG	1 cut(s)	1697
BpiI	GAAGAC	1 cut(s)	323
BplI	GAGNNNNNCTC	2 cut(s)	583, 615
BpmI	CTGGAG	3 cut(s)	1025, 1403, 2216
Bpu10I	CCTNAGC	2 cut(s)	350, 827
Bpu1102I	GCTNAGC	3 cut(s)	248, 1104, 1676
BpuEI	CTTGAG	1 cut(s)	287
Bsa29I	ATCGAT	1 cut(s)	997
BsaAI	YACGTR	2 cut(s)	1960, 1990
BsaHI	GRCGYC	3 cut(s)	99, 123, 1617
BsaI	GGTCTC	2 cut(s)	263, 2174
BsaXI	ACNNNNNCTCC	2 cut(s)	1754, 1784
Bsc4I	CCNNNNNNNGG	9 cut(s)	55, 499, 575, 677, 731, 896, 1386, 1716, 1779
Bse118I	RCCGGY	4 cut(s)	101, 530, 1598, 1936
Bse1I	ACTGG	6 cut(s)	725, 946, 1133, 1432, 1703, 2233
Bse3DI	GCAATG	1 cut(s)	1609
BseBI	CCWGG	2 cut(s)	1817, 2066
BseCI	ATCGAT	1 cut(s)	997
BseGI	GGATG	6 cut(s)	220, 403, 642, 790, 1204, 1764
BseLI	CCNNNNNNNGG	9 cut(s)	55, 499, 575, 677, 731, 896, 1386, 1716, 1779
BseMI	GCAATG	1 cut(s)	1609
BseMII	CTCAG	9 cut(s)	341, 490, 657, 818, 818, 1095, 1508, 1690, 1762
BseNI	ACTGG	6 cut(s)	725, 946, 1133, 1432, 1703, 2233
BsePI	GCGCGC	1 cut(s)	1395
BseRI	GAGGAG	7 cut(s)	58, 68, 71, 844, 881, 892, 1832
BseSI	GKGCMC	5 cut(s)	218, 526, 1087, 1237, 1785
BseX3I	CGGCCG	1 cut(s)	1911
BseXI	GCAGC	9 cut(s)	190, 1180, 1540, 1578, 1669, 1983, 1986, 2082, 2085
BsgI	GTGCAG	2 cut(s)	1577, 2188
Bsh1236I	CGCG	8 cut(s)	128, 1397, 1737, 1848, 1910, 1934, 2041, 2228
Bsh1285I	CGRYCG	1 cut(s)	1914
BshNI	GGYRCC	1 cut(s)	98
BshVI	ATCGAT	1 cut(s)	997
BsiEI	CGRYCG	1 cut(s)	1914
BsiHKAI	GWGCWC	6 cut(s)	195, 526, 644, 1087, 1237, 1677
BsiHKCI	CYCGRG	1 cut(s)	933
BslFI	GGGAC	6 cut(s)	681, 1084, 1448, 1775, 1991, 2006
BslI	CCNNNNNNNGG	9 cut(s)	55, 499, 575, 677, 731, 896, 1386, 1716, 1779
BsmBI	CGTCTC	4 cut(s)	114, 564, 1840, 1889
BsmFI	GGGAC	6 cut(s)	681, 1084, 1448, 1775, 1991, 2006
Bso31I	GGTCTC	2 cut(s)	263, 2174
BsoBI	CYCGRG	1 cut(s)	933
Bsp120I	GGGCCC	1 cut(s)	1781
Bsp1407I	TGTACA	1 cut(s)	1279
Bsp143I	GATC	3 cut(s)	66, 74, 2217
Bsp1720I	GCTNAGC	3 cut(s)	248, 1104, 1676
Bsp19I	CCATGG	1 cut(s)	780
BspCNI	CTCAG	9 cut(s)	342, 489, 656, 817, 819, 1096, 1507, 1689, 1761
BspDI	ATCGAT	1 cut(s)	997
BspFNI	CGCG	8 cut(s)	128, 1397, 1737, 1848, 1910, 1934, 2041, 2228
BspMAI	CTGCAG	1 cut(s)	1256
BspOI	GCTAGC	1 cut(s)	770
BspQI	GCTCTTC	2 cut(s)	459, 1502
BspT107I	GGYRCC	1 cut(s)	98
BspTNI	GGTCTC	2 cut(s)	263, 2174
BsrBI	CCGCTC	2 cut(s)	683, 1500
BsrDI	GCAATG	1 cut(s)	1609
BsrFI	RCCGGY	4 cut(s)	101, 530, 1598, 1936
BsrGI	TGTACA	1 cut(s)	1279
BsrI	ACTGG	6 cut(s)	725, 946, 1133, 1432, 1703, 2233
BssAI	RCCGGY	4 cut(s)	101, 530, 1598, 1936
BssHII	GCGCGC	1 cut(s)	1395
BssMI	GATC	3 cut(s)	66, 74, 2217
BssNI	GRCGYC	3 cut(s)	99, 123, 1617
BssSI	CACGAG	1 cut(s)	863
BssT1I	CCWWGG	5 cut(s)	780, 1305, 1809, 1822, 2055
Bst2BI	CACGAG	1 cut(s)	863
Bst2UI	CCWGG	2 cut(s)	1817, 2066
Bst4CI	ACNGT	9 cut(s)	962, 1462, 1573, 1778, 2112, 2144, 2167, 2185, 2209
Bst6I	CTCTTC	2 cut(s)	459, 1502
BstACI	GRCGYC	3 cut(s)	99, 123, 1617
BstAPI	GCANNNNNTGC	1 cut(s)	426
BstAUI	TGTACA	1 cut(s)	1279
BstBAI	YACGTR	2 cut(s)	1960, 1990
BstDSI	CCRYGG	4 cut(s)	126, 780, 1458, 2166
BstF5I	GGATG	6 cut(s)	220, 403, 642, 790, 1204, 1764
BstFNI	CGCG	8 cut(s)	128, 1397, 1737, 1848, 1910, 1934, 2041, 2228
BstH2I	RGCGCY	4 cut(s)	102, 1426, 1683, 1997
BstKTI	GATC	3 cut(s)	69, 77, 2220
BstMBI	GATC	3 cut(s)	66, 74, 2217
BstMCI	CGRYCG	1 cut(s)	1914
BstNI	CCWGG	2 cut(s)	1817, 2066
BstNSI	RCATGY	6 cut(s)	388, 703, 1103, 1328, 1516, 1882
BstSFI	CTRYAG	2 cut(s)	1252, 2016
BstSLI	GKGCMC	5 cut(s)	218, 526, 1087, 1237, 1785
BstUI	CGCG	8 cut(s)	128, 1397, 1737, 1848, 1910, 1934, 2041, 2228
BstV1I	GCAGC	9 cut(s)	190, 1180, 1540, 1578, 1669, 1983, 1986, 2082, 2085
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	74
BstXI	CCANNNNNNTGG	2 cut(s)	1063, 1960
BstYI	RGATCY	1 cut(s)	74
BstZI	CGGCCG	1 cut(s)	1911
Bsu15I	ATCGAT	1 cut(s)	997
BsuTUI	ATCGAT	1 cut(s)	997
BtgI	CCRYGG	4 cut(s)	126, 780, 1458, 2166
BtgZI	GCGATG	1 cut(s)	1789
BtrI	CACGTC	1 cut(s)	1899
BtsCI	GGATG	6 cut(s)	220, 403, 642, 790, 1204, 1764
BtsI	GCAGTG	2 cut(s)	88, 584
BtsIMutI	CAGTG	8 cut(s)	88, 584, 651, 732, 1041, 1439, 2108, 2240
Cfr10I	RCCGGY	4 cut(s)	101, 530, 1598, 1936
Cfr42I	CCGCGG	1 cut(s)	129
ClaI	ATCGAT	1 cut(s)	997
CseI	GACGC	3 cut(s)	131, 1822, 1916
Csp6I	GTAC	5 cut(s)	871, 1280, 1333, 1360, 1930
CviQI	GTAC	5 cut(s)	871, 1280, 1333, 1360, 1930
DinI	GGCGCC	1 cut(s)	100
DpnI	GATC	3 cut(s)	68, 76, 2219
DpnII	GATC	3 cut(s)	66, 74, 2217
DraIII	CACNNNGTG	1 cut(s)	1963
DrdI	GACNNNNNNGTC	2 cut(s)	1616, 2170
DseDI	GACNNNNNNGTC	2 cut(s)	1616, 2170
EaeI	YGGCCR	4 cut(s)	438, 774, 1911, 1950
EagI	CGGCCG	1 cut(s)	1911
Eam1104I	CTCTTC	2 cut(s)	459, 1502
EarI	CTCTTC	2 cut(s)	459, 1502
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	2 cut(s)	193, 642
EclXI	CGGCCG	1 cut(s)	1911
Eco130I	CCWWGG	5 cut(s)	780, 1305, 1809, 1822, 2055
Eco24I	GRGCYC	5 cut(s)	195, 644, 741, 1785, 2039
Eco31I	GGTCTC	2 cut(s)	263, 2174
Eco47I	GGWCC	6 cut(s)	434, 566, 668, 1462, 1573, 1819
Eco47III	AGCGCT	1 cut(s)	1681
Eco52I	CGGCCG	1 cut(s)	1911
Eco53kI	GAGCTC	2 cut(s)	193, 642
Eco72I	CACGTG	1 cut(s)	1960
Eco88I	CYCGRG	1 cut(s)	933
EcoICRI	GAGCTC	2 cut(s)	193, 642
EcoO109I	RGGNCCY	1 cut(s)	668
EcoRII	CCWGG	2 cut(s)	1815, 2064
EcoT14I	CCWWGG	5 cut(s)	780, 1305, 1809, 1822, 2055
EcoT22I	ATGCAT	1 cut(s)	1101
EcoT38I	GRGCYC	5 cut(s)	195, 644, 741, 1785, 2039
EgeI	GGCGCC	1 cut(s)	100
EheI	GGCGCC	1 cut(s)	100
ErhI	CCWWGG	5 cut(s)	780, 1305, 1809, 1822, 2055
Esp3I	CGTCTC	4 cut(s)	114, 564, 1840, 1889
FaqI	GGGAC	6 cut(s)	681, 1084, 1448, 1775, 1991, 2006
FauI	CCCGC	6 cut(s)	29, 183, 676, 724, 1493, 2053
FblI	GTMKAC	1 cut(s)	1209
FokI	GGATG	6 cut(s)	207, 410, 649, 797, 1211, 1751
FriOI	GRGCYC	5 cut(s)	195, 644, 741, 1785, 2039
FspBI	CTAG	3 cut(s)	602, 767, 1074
GsuI	CTGGAG	3 cut(s)	1025, 1403, 2216
HaeII	RGCGCY	4 cut(s)	102, 1426, 1683, 1997
HgaI	GACGC	3 cut(s)	131, 1822, 1916
Hin1I	GRCGYC	3 cut(s)	99, 123, 1617
HincII	GTYRAC	6 cut(s)	1147, 1210, 2115, 2140, 2163, 2188
HindII	GTYRAC	6 cut(s)	1147, 1210, 2115, 2140, 2163, 2188
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	8 cut(s)	319, 859, 979, 989, 994, 1746, 1979, 2171
HpaI	GTTAAC	1 cut(s)	2115
HphI	GGTGA	2 cut(s)	1975, 2099
Hpy188I	TCNGA	9 cut(s)	611, 680, 807, 984, 1220, 1497, 2050, 2130, 2214
Hpy188III	TCNNGA	7 cut(s)	224, 266, 478, 602, 863, 935, 1750
HpyAV	CCTTC	4 cut(s)	110, 249, 833, 1275
HpyCH4III	ACNGT	9 cut(s)	962, 1462, 1573, 1778, 2112, 2144, 2167, 2185, 2209
HpyCH4IV	ACGT	6 cut(s)	30, 1617, 1898, 1959, 1989, 2123
HpySE526I	ACGT	6 cut(s)	30, 1617, 1898, 1959, 1989, 2123
Hsp92I	GRCGYC	3 cut(s)	99, 123, 1617
KasI	GGCGCC	1 cut(s)	98
KflI	GGGWCCC	1 cut(s)	668
KroI	GCCGGC	3 cut(s)	101, 530, 1598
KroNI	GCCGGC	3 cut(s)	103, 532, 1600
KspAI	GTTAAC	1 cut(s)	2115
KspI	CCGCGG	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	66, 74, 2217
LguI	GCTCTTC	2 cut(s)	459, 1502
Lsp1109I	GCAGC	9 cut(s)	190, 1180, 1540, 1578, 1669, 1983, 1986, 2082, 2085
LweI	GCATC	3 cut(s)	388, 1086, 1911
MaeI	CTAG	3 cut(s)	602, 767, 1074
MaeII	ACGT	6 cut(s)	30, 1617, 1898, 1959, 1989, 2123
MaeIII	GTNAC	5 cut(s)	919, 1298, 1309, 1472, 2106
MalI	GATC	3 cut(s)	68, 76, 2219
MbiI	CCGCTC	2 cut(s)	683, 1500
MboI	GATC	3 cut(s)	66, 74, 2217
MboII	GAAGA	5 cut(s)	163, 328, 476, 1519, 2227
MflI	RGATCY	1 cut(s)	74
MluCI	AATT	5 cut(s)	10, 414, 552, 1225, 1726
Mly113I	GGCGCC	1 cut(s)	99
MlyI	GAGTC	6 cut(s)	313, 973, 983, 1740, 1973, 2180
MmeI	TCCRAC	2 cut(s)	222, 1797
Mph1103I	ATGCAT	1 cut(s)	1101
MroNI	GCCGGC	3 cut(s)	101, 530, 1598
MseI	TTAA	3 cut(s)	497, 1725, 2114
MslI	CAYNNNNRTG	3 cut(s)	225, 1046, 1958
MspA1I	CMGCKG	2 cut(s)	128, 1059
MvaI	CCWGG	2 cut(s)	1817, 2066
MvnI	CGCG	8 cut(s)	128, 1397, 1737, 1848, 1910, 1934, 2041, 2228
NaeI	GCCGGC	3 cut(s)	103, 532, 1600
NarI	GGCGCC	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	780
NdeII	GATC	3 cut(s)	66, 74, 2217
NgoMIV	GCCGGC	3 cut(s)	101, 530, 1598
NheI	GCTAGC	1 cut(s)	766
NmeAIII	GCCGAG	3 cut(s)	615, 1201, 1961
NmuCI	GTSAC	2 cut(s)	1472, 2106
NsiI	ATGCAT	1 cut(s)	1101
NspI	RCATGY	6 cut(s)	388, 703, 1103, 1328, 1516, 1882
OliI	CACNNNNGTG	1 cut(s)	1046
PaeI	GCATGC	4 cut(s)	703, 1103, 1328, 1882
PauI	GCGCGC	1 cut(s)	1395
PciI	ACATGT	1 cut(s)	384
PciSI	GCTCTTC	2 cut(s)	459, 1502
PcsI	WCGNNNNNNNCGW	1 cut(s)	1653
PdiI	GCCGGC	3 cut(s)	103, 532, 1600
PfeI	GAWTC	2 cut(s)	859, 994
PfoI	TCCNGGA	1 cut(s)	2022
PleI	GAGTC	6 cut(s)	313, 973, 983, 1740, 1973, 2179
PluTI	GGCGCC	1 cut(s)	102
PmaCI	CACGTG	1 cut(s)	1960
PmlI	CACGTG	1 cut(s)	1960
PpsI	GAGTC	6 cut(s)	313, 973, 983, 1740, 1973, 2179
Ppu21I	YACGTR	2 cut(s)	1960, 1990
PpuMI	RGGWCCY	1 cut(s)	668
PscI	ACATGT	1 cut(s)	384
Psp124BI	GAGCTC	2 cut(s)	195, 644
Psp5II	RGGWCCY	1 cut(s)	668
Psp6I	CCWGG	2 cut(s)	1815, 2064
PspCI	CACGTG	1 cut(s)	1960
PspGI	CCWGG	2 cut(s)	1815, 2064
PspOMI	GGGCCC	1 cut(s)	1781
PspPPI	RGGWCCY	1 cut(s)	668
PstI	CTGCAG	1 cut(s)	1256
PsuI	RGATCY	1 cut(s)	74
PteI	GCGCGC	1 cut(s)	1395
RsaI	GTAC	5 cut(s)	872, 1281, 1334, 1361, 1931
RsaNI	GTAC	5 cut(s)	871, 1280, 1333, 1360, 1930
RseI	CAYNNNNRTG	3 cut(s)	225, 1046, 1958
SacI	GAGCTC	2 cut(s)	195, 644
SacII	CCGCGG	1 cut(s)	129
SalI	GTCGAC	1 cut(s)	1208
SapI	GCTCTTC	2 cut(s)	459, 1502
SaqAI	TTAA	3 cut(s)	497, 1725, 2114
Sau3AI	GATC	3 cut(s)	66, 74, 2217
SchI	GAGTC	6 cut(s)	313, 973, 983, 1740, 1973, 2180
SfaNI	GCATC	3 cut(s)	388, 1086, 1911
SfcI	CTRYAG	2 cut(s)	1252, 2016
SfoI	GGCGCC	1 cut(s)	100
Sfr303I	CCGCGG	1 cut(s)	129
SgrAI	CRCCGGYG	1 cut(s)	1936
SgrBI	CCGCGG	1 cut(s)	129
SinI	GGWCC	6 cut(s)	434, 566, 668, 1462, 1573, 1819
SmiMI	CAYNNNNRTG	3 cut(s)	225, 1046, 1958
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SphI	GCATGC	4 cut(s)	703, 1103, 1328, 1882
Sse9I	AATT	5 cut(s)	10, 414, 552, 1225, 1726
SspDI	GGCGCC	1 cut(s)	98
SspMI	CTAG	3 cut(s)	602, 767, 1074
SstI	GAGCTC	2 cut(s)	195, 644
StyI	CCWWGG	5 cut(s)	780, 1305, 1809, 1822, 2055
TaaI	ACNGT	9 cut(s)	962, 1462, 1573, 1778, 2112, 2144, 2167, 2185, 2209
TaiI	ACGT	6 cut(s)	33, 1620, 1901, 1962, 1992, 2126
TaqI	TCGA	9 cut(s)	15, 195, 373, 741, 992, 997, 1209, 1568, 1905
TaqII	GACCGA	1 cut(s)	1681
TasI	AATT	5 cut(s)	10, 414, 552, 1225, 1726
TatI	WGTACW	2 cut(s)	870, 1279
TauI	GCSGC	8 cut(s)	128, 549, 583, 779, 1663, 1913, 2085, 2228
TfiI	GAWTC	2 cut(s)	859, 994
Tru1I	TTAA	3 cut(s)	497, 1725, 2114
Tru9I	TTAA	3 cut(s)	497, 1725, 2114
TscAI	CASTG	8 cut(s)	88, 591, 651, 732, 1048, 1439, 2115, 2240
TseFI	GTSAC	2 cut(s)	1472, 2106
TseI	GCWGC	9 cut(s)	178, 1168, 1528, 1591, 1682, 1996, 1999, 2070, 2073
Tsp45I	GTSAC	2 cut(s)	1472, 2106
TspDTI	ATGAA	3 cut(s)	329, 1874, 1982
TspGWI	ACGGA	3 cut(s)	1127, 1195, 1986
TspRI	CASTG	8 cut(s)	88, 591, 651, 732, 1048, 1439, 2115, 2240
VneI	GTGCAC	3 cut(s)	522, 1083, 1233
VpaK11BI	GGWCC	6 cut(s)	434, 566, 668, 1462, 1573, 1819
XapI	RAATTY	1 cut(s)	10
XbaI	TCTAGA	1 cut(s)	601
XceI	RCATGY	6 cut(s)	388, 703, 1103, 1328, 1516, 1882
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1639, 1792
XmiI	GTMKAC	1 cut(s)	1209
XspI	CTAG	3 cut(s)	602, 767, 1074
ZraI	GACGTC	1 cut(s)	1618
Zsp2I	ATGCAT	1 cut(s)	1101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.