Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008368

Physical Location & Seq

Genomic Coordinates Forward (+)

48163382 .. 48169952

Gene Structure 6571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG227900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2247 bp

ATGGCTGAGAATTTCGAGGCGAATAATAACGTCGGCGGGCGGAGGAGCCGGGAGGAGGAGAACGAGATCAGTAGATCTGGCAGCGATAACATGGACGGCGCCGGCTCCGGCGACGAAGGAGACGCCGCGGATAACAGCAACCCTCGTAAGAAGAAGAGATACCACCGACACACCCCGCAGCAAATCCAAGAGCTCGAAGCGTTATTCAAGGAGTGCCCTCATCCTGATGAGAAGCAAAGGTTGGAGCTTAGCAGAAGGCTAAATCTTGAGACCCGGCAAGTCAAGTTCTGGTTCCAAAATCGCCGAACCCAGATGAAGACTCAACTTGAACGGCATGAGAACTCTTTGCTGAGGCAAGAGAACGATAAGCTTCGAGCCGAAAACATGTCCATCAGGGATGCCATGAGGAACCCAATCTGCACAAACTGCGGCGGTCCGGCCATGATAGGCGATATTTCTATTGAAGAGCAACATCTCAGGATTGACAATGCCCGATTAAAGGACGAGTTAGACCGGGTTTGTGCACTTGCCGGCAAGTTCTTGGGCCGCCCAATTTCGTCTCTAGGTCCATCAATGGGGCCTCCACTGCCGAGTTCAGCTCTAGAACTCGGAGTTGGGAACAATGGGTTCGGTGGGATGAGCTCAGTTGCTACAACAATGCCATTGGGACCTGATTTCGGAGCGGGGCTTGGAGGTGGCATGCCGATTGTGGCTCACACTAGGCCGGTGGCGGGAGGGCTCGACGAGAGGACTATGTTTTTGGAGCTAGCTTTGGCCGCCATGGATGAGCTTGTGAAGCTGGCTCAGACTGATGAGCTTTGGCTGAGGAGCTTGGAAGGTGGGAGAGAGGTGCTGAATCACGAGGAGTACATGAGGAGTTTCACGCCTTGCATTGGGTTGAAGCCTAATGGCTTTGTTACCGAGGCTTCTAGGGAGACTGGTATGGTCATCATCAACAGTTTGGCTCTGGTTGAGACTCTGATGGACTCGAATCGATGGCTGGAGATGTTTCCTTGTATGATTGCCAGAACTTCTACCACTGATGTGATTTCCAGCGGTATGGGAGGGACTAGAAATGGTGCACTTCAACTGATGCATGCTGAGCTTCAAGTCCTATCGCCTTTGGTTCCTGTCCGTGAGGTCAACTTCCTCCGCTTCTGCAAGCAGCACGCCGAGGGTGTGTGGGCGGTGGTGGATGTGTCCGTCGACACAATCAGAGACAATTCTGGTGCACCCACATTTGTAAACTGCAGGAGGCTCCCTTCTGGCTGTGTTGTACAAGATATGCCTAATGGTTACTCCAAGGTTACATGGGTTGAGCATGCAGAGTACGACGAGAGCCAAGTCCACCACCTGTACCGACCCTTGTTGAGTTCCGGCATGGGGTTCGGTGCGCAGAGGTGGGTCGCCACCCTCCAGCGCCAATGCCAGTGCCTTGCTATCCTCATGTCCTCCACGGTCCCGGCCCGTGACCACGCCAATACCATCACTCAGAGCGGGAGGAAGAGCATGTTGAAGCTGGCGCAGCGAATGACTGACAACTTCTGCGCCGGGGTCTGCGCCTCGACGGTCCACAAATGGAACAAGCTGCACGCCGGCAATGTGGACGAGGACGTCCGCTACATGACCAGAGAGAGCATGGACGACCCCGGCGAGCCGCCGGGCATTGTGCTCAGCGCTGCCACTTCGGTCTGGCTCCCAGTCTCCCCACAAAGGCTCTTCAATTTCTTGCGCGACGAGCGACTCAGGAGCGAGTGGGACATCCTCTCCAACGGTGGGCCTATGCAGGAGATGGCCCACATCGCCAAGGGCCAGGACCAAGGCAACTGCGTCTCCCTCCTCCGCGCCAGAGCCATGAACGCAAACCAAAACAGCATGCTGATATTACAAGAGACGTGCATCGACGCGGCCGGGTCGCTTGTGGTGTACGCGCCGGTGGATATTCCGGCCATGCACGTGGTGATGAACGGAGGGGACTCGGCCTACGTGGCGCTGCTGCCTTCGGGGTTCGCGATAGTCCCGGACGGGCCGGGCTCGCGTGGTTCGGAGGCCAAGGCAGGCCAGGGCAGCAGCAACGGCGGCGGCGGTGAGGCCAGGGTGAGTGGCTCACTGTTAACGATGACGTTTCAGATATTGGTCAACAGTCTGCCGTCGGCGAAGTTGACCGTGGAGTCGGTGGAGACTGTCAACAATCTCATCTCCTGCACCGTTCAGAAGATCAAGGCCGCGCTCCAGTGCGAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042335 GO:0042545 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0045229 GO:0045595 GO:0045596 GO:0048364 GO:0048367 GO:0048437 GO:0048468 GO:0048469 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090627 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

748

Amino Acids

81.73

Weight (kDa)

5.86

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	51 - 106	1.5e-19	Homeodomain
START	PF01852	256 - 478	1.3e-51	START domain
PDF2_C	PF25797	498 - 746	2.5e-104	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61150 AT4G00730 AT4G00730
fragaria_vesca	FvH4_7g13350 FvH4_7g13350
malus_domestica	MD01G1050200.v1.1 MD07G1127600.v1.1
prunus_persica	Prupe.2G156900_v2.0.a1 Prupe.2G156900_v2.0.a1
pyrus_communis	pycom01g07490 pycom07g12270
rosa_chinensis	RchiOBHm_Chr1g0352671
rosa_laevigata	RLG00000028322
rosa_multiflora	Rmu_co8513183.1_g000001 Rmu_sc0005118.1_g000003
rosa_roxburghii	Rroxscaffold_4G00302500
rosa_rugosa	Rorug01G0230700 Rorug01G0230800 Rorug01G0230900
rosa_samantha	Rh1AG243900 Rh1BG214500 Rh1CG227900 Rh1DG240600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1613, 2170
AatII	GACGTC	1 cut(s)	1617
Acc16I	TGCGCA	1 cut(s)	1395
AccB1I	GGYRCC	1 cut(s)	98
AccBSI	CCGCTC	2 cut(s)	683, 1497
AccI	GTMKAC	1 cut(s)	1206
AccII	CGCG	8 cut(s)	128, 1734, 1845, 1907, 1931, 2012, 2038, 2228
AcoI	YGGCCR	4 cut(s)	438, 774, 1908, 1947
AcsI	RAATTY	1 cut(s)	10
AcvI	CACGTG	1 cut(s)	1957
AcyI	GRCGYC	3 cut(s)	99, 123, 1614
AdeI	CACNNNGTG	1 cut(s)	1960
AfaI	GTAC	5 cut(s)	869, 1278, 1331, 1358, 1928
AfeI	AGCGCT	1 cut(s)	1678
AfiI	CCNNNNNNNGG	9 cut(s)	55, 499, 575, 677, 731, 893, 1383, 1713, 1776
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	8 cut(s)	208, 329, 464, 901, 1088, 1109, 1516, 1723
AjiI	CACGTC	1 cut(s)	1896
AjnI	CCWGG	3 cut(s)	1812, 2061, 2093
AjuI	GAANNNNNNNTTGG	4 cut(s)	224, 256, 597, 629
AleI	CACNNNNGTG	1 cut(s)	1043
Alw21I	GWGCWC	6 cut(s)	195, 526, 644, 1084, 1234, 1674
Alw44I	GTGCAC	3 cut(s)	522, 1080, 1230
Aor51HI	AGCGCT	1 cut(s)	1678
ApaLI	GTGCAC	3 cut(s)	522, 1080, 1230
ApoI	RAATTY	1 cut(s)	10
ArsI	GACNNNNNNTTYG	2 cut(s)	742, 774
AsuHPI	GGTGA	3 cut(s)	1972, 2099, 2110
AsuNHI	GCTAGC	1 cut(s)	766
AvaII	GGWCC	6 cut(s)	434, 566, 668, 1459, 1570, 1816
BaeGI	GKGCMC	4 cut(s)	218, 526, 1084, 1234
BanI	GGYRCC	1 cut(s)	98
BanII	GRGCYC	4 cut(s)	195, 644, 741, 2036
BarI	GAAGNNNNNNTAC	2 cut(s)	143, 175
BauI	CACGAG	1 cut(s)	860
BbrPI	CACGTG	1 cut(s)	1957
BbsI	GAAGAC	1 cut(s)	323
Bbv12I	GWGCWC	6 cut(s)	195, 526, 644, 1084, 1234, 1674
BbvCI	CCTCAGC	2 cut(s)	350, 824
BccI	CCATC	6 cut(s)	398, 577, 976, 990, 1493, 1786
BceAI	ACGGC	4 cut(s)	112, 347, 2092, 2134
BcgI	CGANNNNNNTGC	2 cut(s)	1369, 1403
BciT130I	CCWGG	3 cut(s)	1814, 2063, 2095
BfaI	CTAG	6 cut(s)	563, 602, 720, 767, 930, 1071
BfmI	CTRYAG	1 cut(s)	1249
BfoI	RGCGCY	4 cut(s)	102, 1423, 1680, 1994
BglI	GCCNNNNNGGC	1 cut(s)	1988
BglII	AGATCT	1 cut(s)	74
BlpI	GCTNAGC	3 cut(s)	248, 1101, 1673
Bme18I	GGWCC	6 cut(s)	434, 566, 668, 1459, 1570, 1816
BmgBI	CACGTC	1 cut(s)	1896
BmrI	ACTGGG	1 cut(s)	1694
BmsI	GCATC	3 cut(s)	388, 1083, 1908
BmtI	GCTAGC	1 cut(s)	770
BmuI	ACTGGG	1 cut(s)	1694
BpiI	GAAGAC	1 cut(s)	323
BplI	GAGNNNNNCTC	2 cut(s)	583, 615
BpmI	CTGGAG	3 cut(s)	1022, 1400, 2216
Bpu10I	CCTNAGC	2 cut(s)	350, 824
Bpu1102I	GCTNAGC	3 cut(s)	248, 1101, 1673
BpuEI	CTTGAG	1 cut(s)	287
Bsa29I	ATCGAT	1 cut(s)	994
BsaAI	YACGTR	2 cut(s)	1957, 1987
BsaHI	GRCGYC	3 cut(s)	99, 123, 1614
BsaI	GGTCTC	1 cut(s)	263
BsaXI	ACNNNNNCTCC	4 cut(s)	1751, 1781, 1817, 1847
Bsc4I	CCNNNNNNNGG	9 cut(s)	55, 499, 575, 677, 731, 893, 1383, 1713, 1776
Bse118I	RCCGGY	5 cut(s)	101, 530, 724, 1595, 1933
Bse1I	ACTGG	4 cut(s)	943, 1429, 1700, 2233
Bse3DI	GCAATG	1 cut(s)	1606
BseBI	CCWGG	3 cut(s)	1814, 2063, 2095
BseCI	ATCGAT	1 cut(s)	994
BseGI	GGATG	6 cut(s)	220, 403, 642, 790, 1201, 1761
BseLI	CCNNNNNNNGG	9 cut(s)	55, 499, 575, 677, 731, 893, 1383, 1713, 1776
BseMI	GCAATG	1 cut(s)	1606
BseMII	CTCAG	9 cut(s)	341, 490, 657, 815, 818, 1092, 1505, 1687, 1759
BseNI	ACTGG	4 cut(s)	943, 1429, 1700, 2233
BseRI	GAGGAG	7 cut(s)	58, 68, 71, 841, 878, 889, 1829
BseSI	GKGCMC	4 cut(s)	218, 526, 1084, 1234
BseX3I	CGGCCG	1 cut(s)	1908
BsgI	GTGCAG	3 cut(s)	403, 1574, 2188
Bsh1236I	CGCG	8 cut(s)	128, 1734, 1845, 1907, 1931, 2012, 2038, 2228
Bsh1285I	CGRYCG	1 cut(s)	1911
BshNI	GGYRCC	1 cut(s)	98
BshVI	ATCGAT	1 cut(s)	994
BsiEI	CGRYCG	1 cut(s)	1911
BsiHKAI	GWGCWC	6 cut(s)	195, 526, 644, 1084, 1234, 1674
BslFI	GGGAC	6 cut(s)	681, 1081, 1445, 1772, 1988, 2003
BslI	CCNNNNNNNGG	9 cut(s)	55, 499, 575, 677, 731, 893, 1383, 1713, 1776
BsmBI	CGTCTC	4 cut(s)	114, 564, 1837, 1886
BsmFI	GGGAC	6 cut(s)	681, 1081, 1445, 1772, 1988, 2003
Bso31I	GGTCTC	1 cut(s)	263
Bsp1286I	GDGCHC	9 cut(s)	195, 218, 526, 644, 741, 1084, 1234, 1674, 2036
Bsp1407I	TGTACA	1 cut(s)	1276
Bsp143I	GATC	3 cut(s)	66, 74, 2217
Bsp1720I	GCTNAGC	3 cut(s)	248, 1101, 1673
Bsp19I	CCATGG	1 cut(s)	780
Bsp68I	TCGCGA	1 cut(s)	2012
BspCNI	CTCAG	9 cut(s)	342, 489, 656, 816, 817, 1093, 1504, 1686, 1758
BspDI	ATCGAT	1 cut(s)	994
BspFNI	CGCG	8 cut(s)	128, 1734, 1845, 1907, 1931, 2012, 2038, 2228
BspMAI	CTGCAG	1 cut(s)	1253
BspOI	GCTAGC	1 cut(s)	770
BspQI	GCTCTTC	3 cut(s)	459, 1499, 1724
BspT107I	GGYRCC	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	263
BsrBI	CCGCTC	2 cut(s)	683, 1497
BsrDI	GCAATG	1 cut(s)	1606
BsrFI	RCCGGY	5 cut(s)	101, 530, 724, 1595, 1933
BsrGI	TGTACA	1 cut(s)	1276
BsrI	ACTGG	4 cut(s)	943, 1429, 1700, 2233
BssAI	RCCGGY	5 cut(s)	101, 530, 724, 1595, 1933
BssMI	GATC	3 cut(s)	66, 74, 2217
BssNI	GRCGYC	3 cut(s)	99, 123, 1614
BssSI	CACGAG	1 cut(s)	860
BssT1I	CCWWGG	5 cut(s)	780, 1302, 1806, 1819, 2052
Bst2BI	CACGAG	1 cut(s)	860
Bst2UI	CCWGG	3 cut(s)	1814, 2063, 2095
Bst4CI	ACNGT	9 cut(s)	959, 1459, 1570, 1775, 2112, 2144, 2167, 2185, 2209
Bst6I	CTCTTC	4 cut(s)	149, 459, 1499, 1724
BstACI	GRCGYC	3 cut(s)	99, 123, 1614
BstAPI	GCANNNNNTGC	1 cut(s)	426
BstAUI	TGTACA	1 cut(s)	1276
BstBAI	YACGTR	2 cut(s)	1957, 1987
BstDSI	CCRYGG	4 cut(s)	126, 780, 1455, 2166
BstF5I	GGATG	6 cut(s)	220, 403, 642, 790, 1201, 1761
BstFNI	CGCG	8 cut(s)	128, 1734, 1845, 1907, 1931, 2012, 2038, 2228
BstH2I	RGCGCY	4 cut(s)	102, 1423, 1680, 1994
BstKTI	GATC	3 cut(s)	69, 77, 2220
BstMBI	GATC	3 cut(s)	66, 74, 2217
BstMCI	CGRYCG	1 cut(s)	1911
BstNI	CCWGG	3 cut(s)	1814, 2063, 2095
BstNSI	RCATGY	6 cut(s)	388, 703, 1100, 1325, 1513, 1879
BstSFI	CTRYAG	1 cut(s)	1249
BstSLI	GKGCMC	4 cut(s)	218, 526, 1084, 1234
BstUI	CGCG	8 cut(s)	128, 1734, 1845, 1907, 1931, 2012, 2038, 2228
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	74
BstXI	CCANNNNNNTGG	2 cut(s)	1060, 1957
BstYI	RGATCY	1 cut(s)	74
BstZI	CGGCCG	1 cut(s)	1908
Bsu15I	ATCGAT	1 cut(s)	994
BsuTUI	ATCGAT	1 cut(s)	994
BtgI	CCRYGG	4 cut(s)	126, 780, 1455, 2166
BtgZI	GCGATG	1 cut(s)	1786
BtrI	CACGTC	1 cut(s)	1896
BtsCI	GGATG	6 cut(s)	220, 403, 642, 790, 1201, 1761
BtsI	GCAGTG	1 cut(s)	584
BtsIMutI	CAGTG	5 cut(s)	584, 1038, 1436, 2108, 2240
BtuMI	TCGCGA	1 cut(s)	2012
Cfr10I	RCCGGY	5 cut(s)	101, 530, 724, 1595, 1933
Cfr42I	CCGCGG	1 cut(s)	129
ClaI	ATCGAT	1 cut(s)	994
CpoI	CGGWCCG	1 cut(s)	434
CseI	GACGC	3 cut(s)	131, 1819, 1913
Csp6I	GTAC	5 cut(s)	868, 1277, 1330, 1357, 1927
CspI	CGGWCCG	1 cut(s)	434
CviQI	GTAC	5 cut(s)	868, 1277, 1330, 1357, 1927
DinI	GGCGCC	1 cut(s)	100
DpnI	GATC	3 cut(s)	68, 76, 2219
DpnII	GATC	3 cut(s)	66, 74, 2217
DraIII	CACNNNGTG	1 cut(s)	1960
DrdI	GACNNNNNNGTC	2 cut(s)	1613, 2170
DseDI	GACNNNNNNGTC	2 cut(s)	1613, 2170
EaeI	YGGCCR	4 cut(s)	438, 774, 1908, 1947
EagI	CGGCCG	1 cut(s)	1908
Eam1104I	CTCTTC	4 cut(s)	149, 459, 1499, 1724
EarI	CTCTTC	4 cut(s)	149, 459, 1499, 1724
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	2 cut(s)	193, 642
EclXI	CGGCCG	1 cut(s)	1908
Eco130I	CCWWGG	5 cut(s)	780, 1302, 1806, 1819, 2052
Eco24I	GRGCYC	4 cut(s)	195, 644, 741, 2036
Eco31I	GGTCTC	1 cut(s)	263
Eco47I	GGWCC	6 cut(s)	434, 566, 668, 1459, 1570, 1816
Eco47III	AGCGCT	1 cut(s)	1678
Eco52I	CGGCCG	1 cut(s)	1908
Eco53kI	GAGCTC	2 cut(s)	193, 642
Eco72I	CACGTG	1 cut(s)	1957
EcoICRI	GAGCTC	2 cut(s)	193, 642
EcoO109I	RGGNCCY	2 cut(s)	578, 668
EcoRII	CCWGG	3 cut(s)	1812, 2061, 2093
EcoT14I	CCWWGG	5 cut(s)	780, 1302, 1806, 1819, 2052
EcoT22I	ATGCAT	1 cut(s)	1098
EcoT38I	GRGCYC	4 cut(s)	195, 644, 741, 2036
EgeI	GGCGCC	1 cut(s)	100
EheI	GGCGCC	1 cut(s)	100
ErhI	CCWWGG	5 cut(s)	780, 1302, 1806, 1819, 2052
Esp3I	CGTCTC	4 cut(s)	114, 564, 1837, 1886
FaqI	GGGAC	6 cut(s)	681, 1081, 1445, 1772, 1988, 2003
FauI	CCCGC	5 cut(s)	29, 183, 676, 724, 1490
FblI	GTMKAC	1 cut(s)	1206
FokI	GGATG	6 cut(s)	207, 410, 649, 797, 1208, 1748
FriOI	GRGCYC	4 cut(s)	195, 644, 741, 2036
FspBI	CTAG	6 cut(s)	563, 602, 720, 767, 930, 1071
FspI	TGCGCA	1 cut(s)	1395
GsuI	CTGGAG	3 cut(s)	1022, 1400, 2216
HaeII	RGCGCY	4 cut(s)	102, 1423, 1680, 1994
HgaI	GACGC	3 cut(s)	131, 1819, 1913
Hin1I	GRCGYC	3 cut(s)	99, 123, 1614
HincII	GTYRAC	6 cut(s)	1144, 1207, 2115, 2140, 2163, 2188
HindII	GTYRAC	6 cut(s)	1144, 1207, 2115, 2140, 2163, 2188
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	8 cut(s)	319, 856, 976, 986, 991, 1743, 1976, 2171
HpaI	GTTAAC	1 cut(s)	2115
HphI	GGTGA	3 cut(s)	1972, 2099, 2110
Hpy188I	TCNGA	9 cut(s)	611, 680, 807, 981, 1217, 1494, 2047, 2130, 2214
Hpy188III	TCNNGA	7 cut(s)	224, 266, 478, 602, 860, 1747, 2011
Hpy99I	CGWCG	9 cut(s)	35, 116, 746, 1208, 1337, 1570, 1739, 1907, 2155
HpyAV	CCTTC	5 cut(s)	110, 249, 830, 1272, 2010
HpyCH4III	ACNGT	9 cut(s)	959, 1459, 1570, 1775, 2112, 2144, 2167, 2185, 2209
HpyCH4IV	ACGT	6 cut(s)	30, 1614, 1895, 1956, 1986, 2123
HpySE526I	ACGT	6 cut(s)	30, 1614, 1895, 1956, 1986, 2123
Hsp92I	GRCGYC	3 cut(s)	99, 123, 1614
KasI	GGCGCC	1 cut(s)	98
KroI	GCCGGC	3 cut(s)	101, 530, 1595
KroNI	GCCGGC	3 cut(s)	103, 532, 1597
KspAI	GTTAAC	1 cut(s)	2115
KspI	CCGCGG	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	66, 74, 2217
LguI	GCTCTTC	3 cut(s)	459, 1499, 1724
LweI	GCATC	3 cut(s)	388, 1083, 1908
MaeI	CTAG	6 cut(s)	563, 602, 720, 767, 930, 1071
MaeII	ACGT	6 cut(s)	30, 1614, 1895, 1956, 1986, 2123
MaeIII	GTNAC	4 cut(s)	916, 1295, 1306, 1469
MalI	GATC	3 cut(s)	68, 76, 2219
MbiI	CCGCTC	2 cut(s)	683, 1497
MboI	GATC	3 cut(s)	66, 74, 2217
MboII	GAAGA	7 cut(s)	163, 166, 328, 476, 1516, 1711, 2227
MflI	RGATCY	1 cut(s)	74
MhlI	GDGCHC	9 cut(s)	195, 218, 526, 644, 741, 1084, 1234, 1674, 2036
MluCI	AATT	4 cut(s)	10, 552, 1222, 1723
Mly113I	GGCGCC	1 cut(s)	99
MlyI	GAGTC	6 cut(s)	313, 970, 980, 1737, 1970, 2180
MmeI	TCCRAC	2 cut(s)	222, 1794
Mph1103I	ATGCAT	1 cut(s)	1098
MroNI	GCCGGC	3 cut(s)	101, 530, 1595
MseI	TTAA	2 cut(s)	497, 2114
MslI	CAYNNNNRTG	3 cut(s)	225, 1043, 1955
MspA1I	CMGCKG	2 cut(s)	128, 1056
MvaI	CCWGG	3 cut(s)	1814, 2063, 2095
MvnI	CGCG	8 cut(s)	128, 1734, 1845, 1907, 1931, 2012, 2038, 2228
NaeI	GCCGGC	3 cut(s)	103, 532, 1597
NarI	GGCGCC	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	780
NdeII	GATC	3 cut(s)	66, 74, 2217
NgoMIV	GCCGGC	3 cut(s)	101, 530, 1595
NheI	GCTAGC	1 cut(s)	766
NmeAIII	GCCGAG	3 cut(s)	615, 1198, 1958
NmuCI	GTSAC	1 cut(s)	1469
NruI	TCGCGA	1 cut(s)	2012
NsbI	TGCGCA	1 cut(s)	1395
NsiI	ATGCAT	1 cut(s)	1098
NspI	RCATGY	6 cut(s)	388, 703, 1100, 1325, 1513, 1879
OliI	CACNNNNGTG	1 cut(s)	1043
PaeI	GCATGC	4 cut(s)	703, 1100, 1325, 1879
PciI	ACATGT	1 cut(s)	384
PciSI	GCTCTTC	3 cut(s)	459, 1499, 1724
PcsI	WCGNNNNNNNCGW	2 cut(s)	1650, 2009
PdiI	GCCGGC	3 cut(s)	103, 532, 1597
PfeI	GAWTC	2 cut(s)	856, 991
PfoI	TCCNGGA	1 cut(s)	2019
PleI	GAGTC	6 cut(s)	313, 970, 980, 1737, 1970, 2179
PluTI	GGCGCC	1 cut(s)	102
PmaCI	CACGTG	1 cut(s)	1957
PmlI	CACGTG	1 cut(s)	1957
PpsI	GAGTC	6 cut(s)	313, 970, 980, 1737, 1970, 2179
Ppu21I	YACGTR	2 cut(s)	1957, 1987
PpuMI	RGGWCCY	1 cut(s)	668
PscI	ACATGT	1 cut(s)	384
Psp124BI	GAGCTC	2 cut(s)	195, 644
Psp5II	RGGWCCY	1 cut(s)	668
Psp6I	CCWGG	3 cut(s)	1812, 2061, 2093
PspCI	CACGTG	1 cut(s)	1957
PspGI	CCWGG	3 cut(s)	1812, 2061, 2093
PspPPI	RGGWCCY	1 cut(s)	668
PstI	CTGCAG	1 cut(s)	1253
PsuI	RGATCY	1 cut(s)	74
RruI	TCGCGA	1 cut(s)	2012
RsaI	GTAC	5 cut(s)	869, 1278, 1331, 1358, 1928
RsaNI	GTAC	5 cut(s)	868, 1277, 1330, 1357, 1927
RseI	CAYNNNNRTG	3 cut(s)	225, 1043, 1955
Rsr2I	CGGWCCG	1 cut(s)	434
RsrII	CGGWCCG	1 cut(s)	434
SacI	GAGCTC	2 cut(s)	195, 644
SacII	CCGCGG	1 cut(s)	129
SalI	GTCGAC	1 cut(s)	1205
SapI	GCTCTTC	3 cut(s)	459, 1499, 1724
SaqAI	TTAA	2 cut(s)	497, 2114
Sau3AI	GATC	3 cut(s)	66, 74, 2217
SchI	GAGTC	6 cut(s)	313, 970, 980, 1737, 1970, 2180
SduI	GDGCHC	9 cut(s)	195, 218, 526, 644, 741, 1084, 1234, 1674, 2036
SfaNI	GCATC	3 cut(s)	388, 1083, 1908
SfcI	CTRYAG	1 cut(s)	1249
SfoI	GGCGCC	1 cut(s)	100
Sfr303I	CCGCGG	1 cut(s)	129
SgrAI	CRCCGGYG	1 cut(s)	1933
SgrBI	CCGCGG	1 cut(s)	129
SinI	GGWCC	6 cut(s)	434, 566, 668, 1459, 1570, 1816
SmiMI	CAYNNNNRTG	3 cut(s)	225, 1043, 1955
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SphI	GCATGC	4 cut(s)	703, 1100, 1325, 1879
Sse9I	AATT	4 cut(s)	10, 552, 1222, 1723
SspDI	GGCGCC	1 cut(s)	98
SspMI	CTAG	6 cut(s)	563, 602, 720, 767, 930, 1071
SstI	GAGCTC	2 cut(s)	195, 644
StyI	CCWWGG	5 cut(s)	780, 1302, 1806, 1819, 2052
TaaI	ACNGT	9 cut(s)	959, 1459, 1570, 1775, 2112, 2144, 2167, 2185, 2209
TaiI	ACGT	6 cut(s)	33, 1617, 1898, 1959, 1989, 2126
TaqI	TCGA	9 cut(s)	15, 195, 373, 741, 989, 994, 1206, 1565, 1902
TaqII	GACCGA	1 cut(s)	1678
TasI	AATT	4 cut(s)	10, 552, 1222, 1723
TatI	WGTACW	2 cut(s)	867, 1276
TauI	GCSGC	9 cut(s)	128, 432, 549, 779, 1660, 1910, 2082, 2085, 2228
TfiI	GAWTC	2 cut(s)	856, 991
Tru1I	TTAA	2 cut(s)	497, 2114
Tru9I	TTAA	2 cut(s)	497, 2114
TscAI	CASTG	5 cut(s)	591, 1045, 1436, 2115, 2240
TseFI	GTSAC	1 cut(s)	1469
Tsp45I	GTSAC	1 cut(s)	1469
TspDTI	ATGAA	3 cut(s)	329, 1871, 1979
TspGWI	ACGGA	3 cut(s)	1124, 1192, 1983
TspRI	CASTG	5 cut(s)	591, 1045, 1436, 2115, 2240
VneI	GTGCAC	3 cut(s)	522, 1080, 1230
VpaK11BI	GGWCC	6 cut(s)	434, 566, 668, 1459, 1570, 1816
XapI	RAATTY	1 cut(s)	10
XbaI	TCTAGA	1 cut(s)	601
XceI	RCATGY	6 cut(s)	388, 703, 1100, 1325, 1513, 1879
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1636
XmiI	GTMKAC	1 cut(s)	1206
XspI	CTAG	6 cut(s)	563, 602, 720, 767, 930, 1071
ZraI	GACGTC	1 cut(s)	1615
Zsp2I	ATGCAT	1 cut(s)	1098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.