Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008368

Physical Location & Seq

Genomic Coordinates Forward (+)

45651130 .. 45657659

Gene Structure 6530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG240600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1878 bp

ATGAGTTTTGGGGGTTTTCTTGACAATAGTACCGGCAGTAGTGGCGGTGCAAGAATCGTCGCTGATATTCCTTACAACAACAACCACCACCACCACAACGCCAACCACACCAGTATGCCCTCTGGTGCAATCGCTCAGCCTCGACTCGTGACTCAGTCTCTCACCAAATCAATGTTCAACAACTCACCAGGCCTCTCACTCGCTCTTACTAATGCCGACGGAGGCGGAGACGCGCCGAGAATGGCTGAGAATTTCGAGGCGAATAATAACGTCGGCGGGCGGAGGAGCCGGGAGGAGGAGAACGAGATCAGTAGATCTGGCAGTGATAACATGGACGGCGCCGGCTCCGGCGACGAAGGAGACGCCGCGGATAACAGCAACCCTCGTAAGAAGAAAAGATACCACCGACACACCCCGCAGCAAATCCAAGAGCTCGAAGCGTTATTCAAGGAGTGCCCTCATCCTGATGAGAAGCAAAGGTTGGAGCTTAGCAGAAGGCTAAATCTTGAGACCCGGCAAGTCAAGTTCTGGTTCCAAAATCGCCGAACCCAGATGAAGACTCAACTTGAACGGCATGAGAACTCTTTGCTGAGGCAAGAGAACGATAAGCTTCGAGCCGAAAACATGTCCATCAGGGATGCCATGAGGAACCCAATTTGCACAAACTGCGGTGGTCCGGCCATGATAGGCGATATTTCTATTGAAGAGCAACATCTCAGGATTGACAATGCCCGATTAAAGGACGAGTTAGACCGGGTTTGTGCACTTGCCGGCAAGTTCTTGGGCCGCCCAATTTCGTCTCTTGGTCCATCAATGGGGCCGCCACTGCCGAGTTCAGCTCTAGAACTCGGAGTTGGGAACAATGGGTTCGGTGGGATGAGCTCAGTGGCTACAACAATGCCATTGGGACCCGATTTCGGAGCGGGGCTTGGGGGTGGCATGCCTATTGTGGCTCACAATAGGCCAGTGGCGGGAGGGCTCGACGAGAGGACTATGTTTTTGGAGCTAGCTTTGGCCGCCATGGATGAGCTTGTGAAGCTGGCTCAGACTGATGAGCCACTTTGGCTGAGGAGCTTGGAAGGTGGGAGAGAGGTGCTGAATCACGAGGAGTACATGAGGAGTTTCACGCCTTGCATTGGGTTGAAGCCTAATGGCTTTGTTACCGAGGCTTCTCGGGAGACTGGTATGGTCATCATCAACAGTTTGGCTCTGGTTGAGACTCTGATGGACTCGAATCGATGGCTGGAGATGTTTCCTTGTATGATTGCCAGAACTTCTACCACTGATGTGATTTCCAGCGGTATGGGAGGGACTAGAAATGGTGCACTTCAACTGATGCATGCTGAGCTTCAAGTCCTATCGCCTTTGGTTCCAGTCCGTGAGGTCAACTTCCTCCGCTTCTGCAAGCAGCACGCCGAGGGTGTGTGGGCGGTGGTGGATGTGTCCGTCGACACAATCAGAGACAATTCTGGTGCACCCACATTTGTAAACTGCAGGAGGCTCCCTTCTGGCTGTGTTGTACAAGATATGCCTAATGGTTACTCCAAGGTTACATGGGTTGAGCATGCAGAGTACGACGAGAGCCAAGTCCACCACCTGTACCGACCCTTGTTGAGTTCCGGCATGGGGTTCGGCGCGCAGAGGTGGGTCGCCACCCTCCAGCGCCAATGCCAGTGCCTCGCTATCCTCATGTCCTCCACGGTCCCGGCCCGTGACCACGCCAACAGTAAGCTAATCAACTCAATCCATTCGTGCATTTCTCTCCCTGCTTTTATTTCGATGATAATGTTGTTTGACATCATATCATGGTTTTTAATGCACAGCCATCACTCAGAGCGGGAGGAAGAGCATGTTGAAGCTGGCGCAGCGAATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042335 GO:0042545 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0045229 GO:0045595 GO:0045596 GO:0048364 GO:0048367 GO:0048437 GO:0048468 GO:0048469 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090627 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

625

Amino Acids

68.77

Weight (kDa)

5.92

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	131 - 186	1.2e-19	Homeodomain
START	PF01852	335 - 559	2.8e-54	START domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61150 AT4G00730 AT4G00730
fragaria_vesca	FvH4_7g13350 FvH4_7g13350
malus_domestica	MD01G1050200.v1.1 MD07G1127600.v1.1
prunus_persica	Prupe.2G156900_v2.0.a1 Prupe.2G156900_v2.0.a1
pyrus_communis	pycom01g07490 pycom07g12270
rosa_chinensis	RchiOBHm_Chr1g0352671
rosa_laevigata	RLG00000028322
rosa_multiflora	Rmu_co8513183.1_g000001 Rmu_sc0005118.1_g000003
rosa_roxburghii	Rroxscaffold_4G00302500
rosa_rugosa	Rorug01G0230700 Rorug01G0230800 Rorug01G0230900
rosa_samantha	Rh1AG243900 Rh1BG214500 Rh1CG227900 Rh1DG240600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	338
AccBSI	CCGCTC	2 cut(s)	923, 1837
AccI	GTMKAC	1 cut(s)	1449
AccII	CGCG	3 cut(s)	233, 368, 1637
AcoI	YGGCCR	2 cut(s)	678, 1014
AcsI	RAATTY	1 cut(s)	250
AcyI	GRCGYC	2 cut(s)	339, 363
AfaI	GTAC	5 cut(s)	31, 1112, 1521, 1574, 1601
AfiI	CCNNNNNNNGG	7 cut(s)	295, 739, 815, 917, 971, 1136, 1626
AflIII	ACRYGT	1 cut(s)	624
AgsI	TTSAA	8 cut(s)	178, 448, 569, 704, 1144, 1331, 1352, 1856
AjnI	CCWGG	1 cut(s)	187
AjuI	GAANNNNNNNTTGG	6 cut(s)	158, 190, 464, 496, 837, 869
AleI	CACNNNNGTG	1 cut(s)	1286
Alw21I	GWGCWC	5 cut(s)	435, 766, 884, 1327, 1477
Alw26I	GTCTC	8 cut(s)	162, 222, 354, 503, 804, 1172, 1211, 1455
Alw44I	GTGCAC	3 cut(s)	762, 1323, 1473
Ama87I	CYCGRG	1 cut(s)	1173
AoxI	GGCC	7 cut(s)	190, 678, 784, 818, 962, 1014, 1707
ApaLI	GTGCAC	3 cut(s)	762, 1323, 1473
ApeKI	GCWGC	3 cut(s)	418, 1408, 1865
ApoI	RAATTY	1 cut(s)	250
ArsI	GACNNNNNNTTYG	2 cut(s)	982, 1014
AspLEI	GCGC	6 cut(s)	235, 341, 1637, 1639, 1665, 1865
AspS9I	GGNCC	7 cut(s)	674, 784, 806, 818, 908, 1702, 1708
AsuC2I	CCSGG	4 cut(s)	290, 514, 755, 1706
AsuHPI	GGTGA	2 cut(s)	154, 177
AsuNHI	GCTAGC	1 cut(s)	1006
AvaI	CYCGRG	1 cut(s)	1173
AvaII	GGWCC	4 cut(s)	674, 806, 908, 1702
BaeGI	GKGCMC	4 cut(s)	458, 766, 1327, 1477
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BanI	GGYRCC	1 cut(s)	338
BanII	GRGCYC	3 cut(s)	435, 884, 981
BarI	GAAGNNNNNNTAC	2 cut(s)	383, 415
BauI	CACGAG	2 cut(s)	146, 1103
BbsI	GAAGAC	1 cut(s)	563
Bbv12I	GWGCWC	5 cut(s)	435, 766, 884, 1327, 1477
BbvCI	CCTCAGC	2 cut(s)	590, 1067
BbvI	GCAGC	2 cut(s)	430, 1420
BccI	CCATC	5 cut(s)	638, 817, 1219, 1233, 1833
BceAI	ACGGC	2 cut(s)	352, 587
BcgI	CGANNNNNNTGC	2 cut(s)	1612, 1646
BciT130I	CCWGG	1 cut(s)	189
BcnI	CCSGG	4 cut(s)	290, 514, 755, 1706
BcoDI	GTCTC	8 cut(s)	162, 222, 354, 503, 804, 1172, 1211, 1455
BfaI	CTAG	3 cut(s)	842, 1007, 1314
BfmI	CTRYAG	1 cut(s)	1492
BfoI	RGCGCY	2 cut(s)	342, 1666
BglI	GCCNNNNNGGC	1 cut(s)	1063
BglII	AGATCT	1 cut(s)	314
BisI	GCNGC	7 cut(s)	366, 419, 787, 821, 1017, 1409, 1866
BlpI	GCTNAGC	3 cut(s)	135, 488, 1344
BlsI	GCNGC	7 cut(s)	367, 420, 788, 822, 1018, 1410, 1867
Bme1390I	CCNGG	5 cut(s)	189, 290, 514, 755, 1706
Bme18I	GGWCC	4 cut(s)	674, 806, 908, 1702
BmeT110I	CYCGRG	1 cut(s)	1173
BmgT120I	GGNCC	7 cut(s)	674, 784, 806, 818, 908, 1702, 1708
BmrFI	CCNGG	5 cut(s)	189, 290, 514, 755, 1706
BmsI	GCATC	2 cut(s)	628, 1326
BmtI	GCTAGC	1 cut(s)	1010
BpiI	GAAGAC	1 cut(s)	563
BplI	GAGNNNNNCTC	2 cut(s)	823, 855
BpmI	CTGGAG	2 cut(s)	1265, 1643
Bpu10I	CCTNAGC	2 cut(s)	590, 1067
Bpu1102I	GCTNAGC	3 cut(s)	135, 488, 1344
BpuEI	CTTGAG	1 cut(s)	527
BpuMI	CCSGG	4 cut(s)	290, 514, 755, 1706
Bsa29I	ATCGAT	1 cut(s)	1237
BsaHI	GRCGYC	2 cut(s)	339, 363
BsaI	GGTCTC	1 cut(s)	503
BsaJI	CCNNGG	6 cut(s)	366, 1020, 1164, 1416, 1545, 1698
Bsc4I	CCNNNNNNNGG	7 cut(s)	295, 739, 815, 917, 971, 1136, 1626
Bse118I	RCCGGY	3 cut(s)	32, 341, 770
Bse1I	ACTGG	5 cut(s)	111, 965, 1186, 1373, 1672
BseBI	CCWGG	1 cut(s)	189
BseCI	ATCGAT	1 cut(s)	1237
BseDI	CCNNGG	6 cut(s)	366, 1020, 1164, 1416, 1545, 1698
BseGI	GGATG	5 cut(s)	460, 643, 882, 1030, 1444
BseLI	CCNNNNNNNGG	7 cut(s)	295, 739, 815, 917, 971, 1136, 1626
BseNI	ACTGG	5 cut(s)	111, 965, 1186, 1373, 1672
BsePI	GCGCGC	1 cut(s)	1635
BseRI	GAGGAG	6 cut(s)	298, 308, 311, 1084, 1121, 1132
BseSI	GKGCMC	4 cut(s)	458, 766, 1327, 1477
BseXI	GCAGC	2 cut(s)	430, 1420
Bsh1236I	CGCG	3 cut(s)	233, 368, 1637
BshFI	GGCC	7 cut(s)	192, 680, 786, 820, 964, 1016, 1709
BshNI	GGYRCC	1 cut(s)	338
BshVI	ATCGAT	1 cut(s)	1237
BsiHKAI	GWGCWC	5 cut(s)	435, 766, 884, 1327, 1477
BsiHKCI	CYCGRG	1 cut(s)	1173
BslFI	GGGAC	3 cut(s)	921, 1324, 1688
BslI	CCNNNNNNNGG	7 cut(s)	295, 739, 815, 917, 971, 1136, 1626
BsmAI	GTCTC	8 cut(s)	162, 222, 354, 503, 804, 1172, 1211, 1455
BsmBI	CGTCTC	3 cut(s)	222, 354, 804
BsmFI	GGGAC	3 cut(s)	921, 1324, 1688
BsnI	GGCC	7 cut(s)	192, 680, 786, 820, 964, 1016, 1709
Bso31I	GGTCTC	1 cut(s)	503
BsoBI	CYCGRG	1 cut(s)	1173
Bsp1286I	GDGCHC	7 cut(s)	435, 458, 766, 884, 981, 1327, 1477
Bsp1407I	TGTACA	1 cut(s)	1519
Bsp143I	GATC	2 cut(s)	306, 314
Bsp1720I	GCTNAGC	3 cut(s)	135, 488, 1344
Bsp19I	CCATGG	1 cut(s)	1020
BspANI	GGCC	7 cut(s)	192, 680, 786, 820, 964, 1016, 1709
BspDI	ATCGAT	1 cut(s)	1237
BspFNI	CGCG	3 cut(s)	233, 368, 1637
BspMAI	CTGCAG	1 cut(s)	1496
BspOI	GCTAGC	1 cut(s)	1010
BspQI	GCTCTTC	2 cut(s)	699, 1839
BspT107I	GGYRCC	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	503
BsrBI	CCGCTC	2 cut(s)	923, 1837
BsrFI	RCCGGY	3 cut(s)	32, 341, 770
BsrGI	TGTACA	1 cut(s)	1519
BsrI	ACTGG	5 cut(s)	111, 965, 1186, 1373, 1672
BssAI	RCCGGY	3 cut(s)	32, 341, 770
BssECI	CCNNGG	6 cut(s)	366, 1020, 1164, 1416, 1545, 1698
BssHII	GCGCGC	1 cut(s)	1635
BssMI	GATC	2 cut(s)	306, 314
BssNI	GRCGYC	2 cut(s)	339, 363
BssSI	CACGAG	2 cut(s)	146, 1103
BssT1I	CCWWGG	2 cut(s)	1020, 1545
Bst2BI	CACGAG	2 cut(s)	146, 1103
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	3 cut(s)	1202, 1702, 1727
Bst6I	CTCTTC	2 cut(s)	699, 1839
BstACI	GRCGYC	2 cut(s)	339, 363
BstAPI	GCANNNNNTGC	1 cut(s)	666
BstAUI	TGTACA	1 cut(s)	1519
BstDSI	CCRYGG	3 cut(s)	366, 1020, 1698
BstF5I	GGATG	5 cut(s)	460, 643, 882, 1030, 1444
BstFNI	CGCG	3 cut(s)	233, 368, 1637
BstH2I	RGCGCY	2 cut(s)	342, 1666
BstHHI	GCGC	6 cut(s)	235, 341, 1637, 1639, 1665, 1865
BstKTI	GATC	2 cut(s)	309, 317
BstMAI	GTCTC	8 cut(s)	162, 222, 354, 503, 804, 1172, 1211, 1455
BstMBI	GATC	2 cut(s)	306, 314
BstMWI	GCNNNNNNNGC	8 cut(s)	42, 666, 826, 1016, 1036, 1063, 1345, 1865
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	5 cut(s)	628, 943, 1343, 1568, 1853
BstSCI	CCNGG	5 cut(s)	187, 288, 512, 753, 1704
BstSFI	CTRYAG	1 cut(s)	1492
BstSLI	GKGCMC	4 cut(s)	458, 766, 1327, 1477
BstUI	CGCG	3 cut(s)	233, 368, 1637
BstV1I	GCAGC	2 cut(s)	430, 1420
BstV2I	GAAGAC	1 cut(s)	563
BstX2I	RGATCY	1 cut(s)	314
BstXI	CCANNNNNNTGG	1 cut(s)	1303
BstYI	RGATCY	1 cut(s)	314
Bsu15I	ATCGAT	1 cut(s)	1237
BsuRI	GGCC	7 cut(s)	192, 680, 786, 820, 964, 1016, 1709
BsuTUI	ATCGAT	1 cut(s)	1237
BtgI	CCRYGG	3 cut(s)	366, 1020, 1698
BtsCI	GGATG	5 cut(s)	460, 643, 882, 1030, 1444
BtsI	GCAGTG	2 cut(s)	328, 824
BtsIMutI	CAGTG	6 cut(s)	328, 824, 891, 972, 1281, 1679
CfoI	GCGC	6 cut(s)	235, 341, 1637, 1639, 1665, 1865
Cfr10I	RCCGGY	3 cut(s)	32, 341, 770
Cfr13I	GGNCC	7 cut(s)	674, 784, 806, 818, 908, 1702, 1708
Cfr42I	CCGCGG	1 cut(s)	369
ClaI	ATCGAT	1 cut(s)	1237
CseI	GACGC	2 cut(s)	239, 371
Csp6I	GTAC	5 cut(s)	30, 1111, 1520, 1573, 1600
CviQI	GTAC	5 cut(s)	30, 1111, 1520, 1573, 1600
DinI	GGCGCC	1 cut(s)	340
DpnI	GATC	2 cut(s)	308, 316
DpnII	GATC	2 cut(s)	306, 314
EaeI	YGGCCR	2 cut(s)	678, 1014
Eam1104I	CTCTTC	2 cut(s)	699, 1839
EarI	CTCTTC	2 cut(s)	699, 1839
EciI	GGCGGA	2 cut(s)	240, 295
Ecl136II	GAGCTC	2 cut(s)	433, 882
Eco130I	CCWWGG	2 cut(s)	1020, 1545
Eco147I	AGGCCT	1 cut(s)	192
Eco24I	GRGCYC	3 cut(s)	435, 884, 981
Eco31I	GGTCTC	1 cut(s)	503
Eco47I	GGWCC	4 cut(s)	674, 806, 908, 1702
Eco53kI	GAGCTC	2 cut(s)	433, 882
Eco88I	CYCGRG	1 cut(s)	1173
EcoICRI	GAGCTC	2 cut(s)	433, 882
EcoO109I	RGGNCCY	1 cut(s)	908
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	1020, 1545
EcoT22I	ATGCAT	1 cut(s)	1341
EcoT38I	GRGCYC	3 cut(s)	435, 884, 981
EgeI	GGCGCC	1 cut(s)	340
EheI	GGCGCC	1 cut(s)	340
ErhI	CCWWGG	2 cut(s)	1020, 1545
Esp3I	CGTCTC	3 cut(s)	222, 354, 804
FaqI	GGGAC	3 cut(s)	921, 1324, 1688
FauI	CCCGC	5 cut(s)	269, 423, 916, 964, 1830
FblI	GTMKAC	1 cut(s)	1449
Fnu4HI	GCNGC	7 cut(s)	366, 419, 787, 821, 1017, 1409, 1866
FokI	GGATG	5 cut(s)	447, 650, 889, 1037, 1451
FriOI	GRGCYC	3 cut(s)	435, 884, 981
Fsp4HI	GCNGC	7 cut(s)	366, 419, 787, 821, 1017, 1409, 1866
FspBI	CTAG	3 cut(s)	842, 1007, 1314
GlaI	GCGC	6 cut(s)	234, 340, 1636, 1638, 1664, 1864
GluI	GCNGC	7 cut(s)	366, 419, 787, 821, 1017, 1409, 1866
GsuI	CTGGAG	2 cut(s)	1265, 1643
HaeII	RGCGCY	2 cut(s)	342, 1666
HaeIII	GGCC	7 cut(s)	192, 680, 786, 820, 964, 1016, 1709
HgaI	GACGC	2 cut(s)	239, 371
HhaI	GCGC	6 cut(s)	235, 341, 1637, 1639, 1665, 1865
Hin1I	GRCGYC	2 cut(s)	339, 363
Hin6I	GCGC	6 cut(s)	233, 339, 1635, 1637, 1663, 1863
HinP1I	GCGC	6 cut(s)	233, 339, 1635, 1637, 1663, 1863
HincII	GTYRAC	2 cut(s)	1387, 1450
HindII	GTYRAC	2 cut(s)	1387, 1450
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	8 cut(s)	54, 144, 151, 559, 1099, 1219, 1229, 1234
HphI	GGTGA	2 cut(s)	154, 177
Hpy166II	GTNNAC	7 cut(s)	764, 1325, 1387, 1450, 1475, 1489, 1591
Hpy188I	TCNGA	6 cut(s)	851, 920, 1047, 1224, 1460, 1834
Hpy188III	TCNNGA	8 cut(s)	20, 148, 464, 506, 718, 842, 1103, 1175
Hpy8I	GTNNAC	7 cut(s)	764, 1325, 1387, 1450, 1475, 1489, 1591
Hpy99I	CGWCG	7 cut(s)	62, 221, 275, 356, 986, 1451, 1580
HpyAV	CCTTC	4 cut(s)	350, 489, 1073, 1515
HpyCH4III	ACNGT	3 cut(s)	1202, 1702, 1727
HpyCH4IV	ACGT	1 cut(s)	270
HpyF10VI	GCNNNNNNNGC	8 cut(s)	42, 666, 826, 1016, 1036, 1063, 1345, 1865
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	2 cut(s)	339, 363
HspAI	GCGC	6 cut(s)	233, 339, 1635, 1637, 1663, 1863
KasI	GGCGCC	1 cut(s)	338
KflI	GGGWCCC	1 cut(s)	908
KroI	GCCGGC	2 cut(s)	341, 770
KroNI	GCCGGC	2 cut(s)	343, 772
KspI	CCGCGG	1 cut(s)	369
Kzo9I	GATC	2 cut(s)	306, 314
LguI	GCTCTTC	2 cut(s)	699, 1839
LmnI	GCTCC	7 cut(s)	285, 350, 484, 920, 1003, 1071, 1506
Lsp1109I	GCAGC	2 cut(s)	430, 1420
LweI	GCATC	2 cut(s)	628, 1326
MaeI	CTAG	3 cut(s)	842, 1007, 1314
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	5 cut(s)	148, 1159, 1538, 1549, 1712
MalI	GATC	2 cut(s)	308, 316
MbiI	CCGCTC	2 cut(s)	923, 1837
MboI	GATC	2 cut(s)	306, 314
MboII	GAAGA	4 cut(s)	403, 568, 716, 1856
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	7 cut(s)	435, 458, 766, 884, 981, 1327, 1477
MluCI	AATT	4 cut(s)	250, 654, 792, 1465
Mly113I	GGCGCC	1 cut(s)	339
MlyI	GAGTC	5 cut(s)	138, 145, 553, 1213, 1223
MmeI	TCCRAC	1 cut(s)	462
Mph1103I	ATGCAT	1 cut(s)	1341
MroNI	GCCGGC	2 cut(s)	341, 770
MseI	TTAA	2 cut(s)	737, 1814
MslI	CAYNNNNRTG	3 cut(s)	113, 465, 1286
MspA1I	CMGCKG	2 cut(s)	368, 1299
MspR9I	CCNGG	5 cut(s)	189, 290, 514, 755, 1706
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	3 cut(s)	233, 368, 1637
MwoI	GCNNNNNNNGC	8 cut(s)	42, 666, 826, 1016, 1036, 1063, 1345, 1865
NaeI	GCCGGC	2 cut(s)	343, 772
NarI	GGCGCC	1 cut(s)	339
NciI	CCSGG	4 cut(s)	290, 514, 755, 1706
NcoI	CCATGG	1 cut(s)	1020
NdeII	GATC	2 cut(s)	306, 314
NgoMIV	GCCGGC	2 cut(s)	341, 770
NheI	GCTAGC	1 cut(s)	1006
NmeAIII	GCCGAG	3 cut(s)	261, 855, 1441
NmuCI	GTSAC	2 cut(s)	148, 1712
NsiI	ATGCAT	1 cut(s)	1341
NspI	RCATGY	5 cut(s)	628, 943, 1343, 1568, 1853
OliI	CACNNNNGTG	1 cut(s)	1286
PaeI	GCATGC	3 cut(s)	943, 1343, 1568
PauI	GCGCGC	1 cut(s)	1635
PceI	AGGCCT	1 cut(s)	192
PciI	ACATGT	1 cut(s)	624
PciSI	GCTCTTC	2 cut(s)	699, 1839
PdiI	GCCGGC	2 cut(s)	343, 772
PfeI	GAWTC	3 cut(s)	54, 1099, 1234
PflFI	GACNNNGTC	1 cut(s)	154
PkrI	GCNGC	7 cut(s)	367, 420, 788, 822, 1018, 1410, 1867
PleI	GAGTC	5 cut(s)	138, 145, 553, 1213, 1223
PluTI	GGCGCC	1 cut(s)	342
PpsI	GAGTC	5 cut(s)	138, 145, 553, 1213, 1223
PpuMI	RGGWCCY	1 cut(s)	908
PscI	ACATGT	1 cut(s)	624
Psp124BI	GAGCTC	2 cut(s)	435, 884
Psp5II	RGGWCCY	1 cut(s)	908
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspPI	GGNCC	7 cut(s)	674, 784, 806, 818, 908, 1702, 1708
PspPPI	RGGWCCY	1 cut(s)	908
PstI	CTGCAG	1 cut(s)	1496
PsuI	RGATCY	1 cut(s)	314
PsyI	GACNNNGTC	1 cut(s)	154
PteI	GCGCGC	1 cut(s)	1635
RsaI	GTAC	5 cut(s)	31, 1112, 1521, 1574, 1601
RsaNI	GTAC	5 cut(s)	30, 1111, 1520, 1573, 1600
RseI	CAYNNNNRTG	3 cut(s)	113, 465, 1286
SacI	GAGCTC	2 cut(s)	435, 884
SacII	CCGCGG	1 cut(s)	369
SalI	GTCGAC	1 cut(s)	1448
SapI	GCTCTTC	2 cut(s)	699, 1839
SaqAI	TTAA	2 cut(s)	737, 1814
SatI	GCNGC	7 cut(s)	366, 419, 787, 821, 1017, 1409, 1866
Sau3AI	GATC	2 cut(s)	306, 314
Sau96I	GGNCC	7 cut(s)	674, 784, 806, 818, 908, 1702, 1708
SchI	GAGTC	5 cut(s)	138, 145, 553, 1213, 1223
ScrFI	CCNGG	5 cut(s)	189, 290, 514, 755, 1706
SduI	GDGCHC	7 cut(s)	435, 458, 766, 884, 981, 1327, 1477
SfaNI	GCATC	2 cut(s)	628, 1326
SfcI	CTRYAG	1 cut(s)	1492
SfoI	GGCGCC	1 cut(s)	340
Sfr303I	CCGCGG	1 cut(s)	369
SgrBI	CCGCGG	1 cut(s)	369
SinI	GGWCC	4 cut(s)	674, 806, 908, 1702
SmiMI	CAYNNNNRTG	3 cut(s)	113, 465, 1286
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SphI	GCATGC	3 cut(s)	943, 1343, 1568
Sse9I	AATT	4 cut(s)	250, 654, 792, 1465
SseBI	AGGCCT	1 cut(s)	192
SspDI	GGCGCC	1 cut(s)	338
SspMI	CTAG	3 cut(s)	842, 1007, 1314
SstI	GAGCTC	2 cut(s)	435, 884
StuI	AGGCCT	1 cut(s)	192
StyD4I	CCNGG	5 cut(s)	187, 288, 512, 753, 1704
StyI	CCWWGG	2 cut(s)	1020, 1545
TaaI	ACNGT	3 cut(s)	1202, 1702, 1727
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	9 cut(s)	142, 255, 435, 613, 981, 1232, 1237, 1449, 1778
TasI	AATT	4 cut(s)	250, 654, 792, 1465
TatI	WGTACW	2 cut(s)	1110, 1519
TauI	GCSGC	4 cut(s)	368, 789, 823, 1019
TfiI	GAWTC	3 cut(s)	54, 1099, 1234
Tru1I	TTAA	2 cut(s)	737, 1814
Tru9I	TTAA	2 cut(s)	737, 1814
TscAI	CASTG	6 cut(s)	328, 831, 891, 972, 1288, 1679
TseFI	GTSAC	2 cut(s)	148, 1712
TseI	GCWGC	3 cut(s)	418, 1408, 1865
Tsp45I	GTSAC	2 cut(s)	148, 1712
TspDTI	ATGAA	1 cut(s)	569
TspGWI	ACGGA	3 cut(s)	234, 1367, 1435
TspRI	CASTG	6 cut(s)	328, 831, 891, 972, 1288, 1679
Tth111I	GACNNNGTC	1 cut(s)	154
VneI	GTGCAC	3 cut(s)	762, 1323, 1473
VpaK11BI	GGWCC	4 cut(s)	674, 806, 908, 1702
XapI	RAATTY	1 cut(s)	250
XbaI	TCTAGA	1 cut(s)	841
XceI	RCATGY	5 cut(s)	628, 943, 1343, 1568, 1853
XmiI	GTMKAC	1 cut(s)	1449
XspI	CTAG	3 cut(s)	842, 1007, 1314
Zsp2I	ATGCAT	1 cut(s)	1341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.