Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008368

Physical Location & Seq

Genomic Coordinates Reverse (-)

15310065 .. 15316370

Gene Structure 6306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1050200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2472 bp

ATGAGTTTTGGGGGTTTTCTTGACAACAGTACCGGCAGTAGTGGCGGTGCGAGAATCGTGGCTGATATTCCTTACACCAATAGCAACAACAACATGCCATCGAGTGCAATCGCTCAGCCACACCTTGTAACTCAGTCTCTCACTAAATCTATGTTCAACTCTCCGGGACTCTCACTTGCCCTAACAAATGTGGATGGGCAAGGAGATGTGACGAGAGTGGCCGAGAGTTATGAGGCAAACAACGGCGGGAGAAGGAGCAGAGAGGAAGAACACGAGAGCAGATCCGGGAGTGATAACATGGATGGTGCTTCTGGGGACGATCAAGATGCCGCTGACAACAACCCTCGTAAGAAGAAGCGTTACCACCGACACACCCCTCAGCAAATCCAAGAACTTGAAGCGCTGTTCAAAGAGTGCCCTCATCCGGATGAGAAGCAAAGATTGGAGCTCAGCAGAAGGCTTAACTTGGAGACCAGACAAGTCAAATTCTGGTTCCAAAATCGCCGAACCCAGATGAAGACGCAACTGGAACGCCATGAGAACTCGTTGCTGAGGCAAGAGAACGATAAGCTCCGAGCGGAGAACATGTCGATTCGTGACGCTATGAGGAACCCAATTTGCTCAAATTGTGGTGGTCCGGCAATTATTGGAGATATATCACTAGACGAGCAGCATCTCAGGATCGAAAATGCTCGATTGAAGGACGAGTTGGACCGAGTTTGTACACTGGCCGGAAAGTTTCTAGGCCGACCCATTTCATCCCTGGCTACATCCATGGGGCCTCCGCTTCCGAGCTCCACTTTGGAGCTCGGAGTTGGGAGCAATGGGTTTGGTGGGATGAGCAATGTGGCTACATCAATATCCATGGGACCTGATTTTGGAGGTGGGATTGGGAGTGCTATGTCAATTGTGTCTCATGGTAGGCCGAGTGTGACGGGGCTAGACCGGTCGATAGAGAGATCGATGTTTCTAGAGCTTGCTTTGGCTGCCATGGATGAATTGGTTAAGATGGCTCAGACAGATGAGCCCCTTTGGCTAAGGAGTTTGGAGGGTGGAAGGGAGGTTTTGAACCATGAGGAATACATGAGAAGTTTCACTCCTTGCATCGGATTGAAACCGAGTGGTTTTGTCTCCGAGGCTTCTAGGGAGTCTGGAATGGTCATCATCAACAGCTTAACTCTTGTTGAAACTTTGATGGATTCGAATCGATGGTTGGAGATGTTTCCTGGTGTGATTGCAAGAACATCAACCACAGATGTGATTTCCAGTGGCATGGGAGGAACTAGAAATGGTGCACTTCAACTGATGCATGCTGAGTTGCAAGTCCTATCACCTTTGGTTCCGGTTCGTGAGGTCAATTTCCTCCGTTTCTGCAAGCAGCTCGCAGAGGGCGTGTGGGCTGTGGTTGACGTGTCGGTTGACGTCATTCGCGACACCTCCGGTGCACCAACATTTATGAACTGCAGGAGGCTCCCTTCTGGCTGTGTTGTGCAAGACATGCCCAATGGGTACTCTAGGGTTACATGGGTTGAGCATGCGGAGTATGATGAAAGCCAAGTCCACCAGCTATACCGACCCTTGTTAAGTTCCGGCATGGGCTTCGGCGCTCAACGGTGGGTCGCCACCCTTCAACGCCAATCCGAGTTCCAGGCCATTCTCATGTCCTCCTCCGTCCCATCCCGCGACCACACTGCTATCACTGCCAGCGGGAGGAGGAGCATGCTGAAGCTGGCGCAGCGGATGACAGACAACTTCTGTGCCGGAGTATGTGCATCGACTGTGCATAAATGGACCAAGCTTAACGCCGGGAACGTCGACGAGGACGTCCGGGTCATGACTCGGGAGAGCCTCGACGACCCCGGCGAGCCACCGGGTGTGGTGCTCAGCGCTGCCACTTCGGTCTGGCTGCCGGTCTCTCCGCAGAGGCTATTTGATTTCTTGCGTGATGAGCGACTGAGGAGCGAGTGGGACATACTCTCCAACGGCGGGCCCATGCAGGAGATGGCCCACATCGCCAAGGGCCAGGACCCCGGCAACTGCGTTTCCCTCCTCCGCGCCAGAGCAAACGCAAACCAAGGCAGCATGCTGATCCTACAAGAGACACGCATAGACGCTGCGGGGTCGCTAGTGGTGTACGCGCCAGTTGACATTCCGGCCATGCACGTGGTCATGAACGGCGGGGACTCCGCCTACGTTGCTCTCCTGCCATCCGGGTTCGCAATCGTCCCTGATGGCCCAGGCTCTCGCGGGCCCATGTCCGGCAAAGGCGCCACTCACGGCAGCAGCAATGGCGGCGGGTGCGGTGATGACGGTGGCAATAGAGTGAGCGGGTCCCTCCTGACAATGACGTTTCAGATCCTTGTGAACAGCCTGCCGGCGGGCAAGCTGACCGTAGAGTCGGTGGAGACGGTGAACCACCTCATATCCTGCACGGTCCAGAAGATCAAGGCGTCCCTCCATTGTGAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042335 GO:0042545 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0045229 GO:0045595 GO:0045596 GO:0048364 GO:0048367 GO:0048437 GO:0048468 GO:0048469 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090627 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

824

Amino Acids

89.32

Weight (kDa)

5.87

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	118 - 173	1.7e-19	Homeodomain
START	PF01852	325 - 547	4.4e-53	START domain
PDF2_C	PF25797	568 - 821	1.4e-99	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61150 AT4G00730 AT4G00730
fragaria_vesca	FvH4_7g13350 FvH4_7g13350
malus_domestica	MD01G1050200.v1.1 MD07G1127600.v1.1
prunus_persica	Prupe.2G156900_v2.0.a1 Prupe.2G156900_v2.0.a1
pyrus_communis	pycom01g07490 pycom07g12270
rosa_chinensis	RchiOBHm_Chr1g0352671
rosa_laevigata	RLG00000028322
rosa_multiflora	Rmu_co8513183.1_g000001 Rmu_sc0005118.1_g000003
rosa_roxburghii	Rroxscaffold_4G00302500
rosa_rugosa	Rorug01G0230700 Rorug01G0230800 Rorug01G0230900
rosa_samantha	Rh1AG243900 Rh1BG214500 Rh1CG227900 Rh1DG240600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	1823, 1829, 2395
AatII	GACGTC	2 cut(s)	1425, 1827
AccB1I	GGYRCC	1 cut(s)	2267
AccBSI	CCGCTC	2 cut(s)	578, 2328
AccI	GTMKAC	1 cut(s)	1815
AccII	CGCG	5 cut(s)	1431, 1683, 2055, 2138, 2247
AccIII	TCCGGA	1 cut(s)	424
AclWI	GGATC	4 cut(s)	276, 689, 2083, 2350
AcoI	YGGCCR	3 cut(s)	219, 729, 2154
AcsI	RAATTY	1 cut(s)	485
AcuI	CTGAAG	1 cut(s)	1745
AcvI	CACGTG	1 cut(s)	2164
AcyI	GRCGYC	4 cut(s)	1422, 1824, 2268, 2450
AdeI	CACNNNGTG	1 cut(s)	1874
AfaI	GTAC	4 cut(s)	31, 724, 1511, 2135
AfeI	AGCGCT	2 cut(s)	402, 1888
AfiI	CCNNNNNNNGG	7 cut(s)	424, 878, 1106, 1710, 1986, 2258, 2377
AflIII	ACRYGT	2 cut(s)	585, 1410
AgeI	ACCGGT	1 cut(s)	945
AgsI	TTSAA	9 cut(s)	157, 398, 409, 700, 1069, 1114, 1187, 1301, 1631
AjiI	CACGTC	1 cut(s)	1411
AjnI	CCWGG	5 cut(s)	762, 1225, 1647, 2022, 2236
AjuI	GAANNNNNNNTTGG	6 cut(s)	425, 457, 692, 724, 1196, 1228
AleI	CACNNNNGTG	1 cut(s)	1256
Alw21I	GWGCWC	6 cut(s)	450, 797, 810, 1297, 1447, 1884
Alw26I	GTCTC	7 cut(s)	141, 464, 918, 1135, 1918, 2093, 2399
Alw44I	GTGCAC	2 cut(s)	1293, 1443
AlwI	GGATC	4 cut(s)	276, 689, 2083, 2350
Ama87I	CYCGRG	1 cut(s)	1839
Aor13HI	TCCGGA	1 cut(s)	424
Aor51HI	AGCGCT	2 cut(s)	402, 1888
ApaI	GGGCCC	2 cut(s)	1992, 2253
ApaLI	GTGCAC	2 cut(s)	1293, 1443
ApoI	RAATTY	1 cut(s)	485
AsiGI	ACCGGT	1 cut(s)	945
AspLEI	GCGC	7 cut(s)	403, 1607, 1735, 1889, 2057, 2140, 2270
AsuC2I	CCSGG	8 cut(s)	165, 286, 1807, 1829, 1860, 1872, 2031, 2212
AsuHPI	GGTGA	3 cut(s)	1323, 2315, 2422
AsuII	TTCGAA	1 cut(s)	1202
AvaI	CYCGRG	1 cut(s)	1839
AvaII	GGWCC	7 cut(s)	635, 712, 869, 1791, 2026, 2331, 2434
BaeGI	GKGCMC	5 cut(s)	419, 1297, 1447, 1992, 2253
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BanI	GGYRCC	1 cut(s)	2267
BanII	GRGCYC	6 cut(s)	450, 797, 810, 1029, 1992, 2253
BarI	GAAGNNNNNNTAC	2 cut(s)	344, 376
BauI	CACGAG	1 cut(s)	272
BbrPI	CACGTG	1 cut(s)	2164
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	6 cut(s)	450, 797, 810, 1297, 1447, 1884
BbvCI	CCTCAGC	2 cut(s)	378, 551
BceAI	ACGGC	4 cut(s)	259, 1999, 2191, 2293
BcgI	CGANNNNNNTGC	8 cut(s)	308, 342, 1363, 1397, 1582, 1616, 1673, 1707
BciT130I	CCWGG	5 cut(s)	764, 1227, 1649, 2024, 2238
BcnI	CCSGG	8 cut(s)	165, 286, 1807, 1829, 1860, 1872, 2031, 2212
BcoDI	GTCTC	7 cut(s)	141, 464, 918, 1135, 1918, 2093, 2399
BfaI	CTAG	8 cut(s)	662, 743, 941, 971, 1143, 1284, 1515, 2126
BfmI	CTRYAG	1 cut(s)	1462
BfoI	RGCGCY	4 cut(s)	404, 1608, 1890, 2271
BglI	GCCNNNNNGGC	1 cut(s)	1033
BlpI	GCTNAGC	3 cut(s)	114, 449, 1883
Bme18I	GGWCC	7 cut(s)	635, 712, 869, 1791, 2026, 2331, 2434
BmeT110I	CYCGRG	1 cut(s)	1839
BmgBI	CACGTC	1 cut(s)	1411
BmsI	GCATC	5 cut(s)	316, 682, 1113, 1296, 1781
BpiI	GAAGAC	1 cut(s)	524
Bpu10I	CCTNAGC	3 cut(s)	378, 551, 1037
Bpu1102I	GCTNAGC	3 cut(s)	114, 449, 1883
Bpu14I	TTCGAA	1 cut(s)	1202
BpuMI	CCSGG	8 cut(s)	165, 286, 1807, 1829, 1860, 1872, 2031, 2212
Bsa29I	ATCGAT	2 cut(s)	962, 1207
BsaAI	YACGTR	1 cut(s)	2164
BsaBI	GATNNNNATC	1 cut(s)	1203
BsaHI	GRCGYC	4 cut(s)	1422, 1824, 2268, 2450
BsaI	GGTCTC	2 cut(s)	464, 1918
BsaWI	WCCGGW	4 cut(s)	424, 945, 1342, 1439
BsaXI	ACNNNNNCTCC	4 cut(s)	572, 602, 1961, 1991
Bsc4I	CCNNNNNNNGG	7 cut(s)	424, 878, 1106, 1710, 1986, 2258, 2377
Bse118I	RCCGGY	4 cut(s)	32, 945, 1909, 2374
Bse1I	ACTGG	4 cut(s)	531, 732, 1266, 2141
Bse3DI	GCAATG	3 cut(s)	829, 850, 2293
Bse8I	GATNNNNATC	1 cut(s)	1203
BseAI	TCCGGA	1 cut(s)	424
BseBI	CCWGG	5 cut(s)	764, 1227, 1649, 2024, 2238
BseCI	ATCGAT	2 cut(s)	962, 1207
BseJI	GATNNNNATC	1 cut(s)	1203
BseLI	CCNNNNNNNGG	7 cut(s)	424, 878, 1106, 1710, 1986, 2258, 2377
BseMI	GCAATG	3 cut(s)	829, 850, 2293
BseNI	ACTGG	4 cut(s)	531, 732, 1266, 2141
BseRI	GAGGAG	5 cut(s)	1657, 1726, 1729, 1972, 2039
BseSI	GKGCMC	5 cut(s)	419, 1297, 1447, 1992, 2253
BsgI	GTGCAG	1 cut(s)	2413
Bsh1236I	CGCG	5 cut(s)	1431, 1683, 2055, 2138, 2247
Bsh1285I	CGRYCG	1 cut(s)	950
BshNI	GGYRCC	1 cut(s)	2267
BshTI	ACCGGT	1 cut(s)	945
BshVI	ATCGAT	2 cut(s)	962, 1207
BsiEI	CGRYCG	1 cut(s)	950
BsiHKAI	GWGCWC	6 cut(s)	450, 797, 810, 1297, 1447, 1884
BsiHKCI	CYCGRG	1 cut(s)	1839
BslFI	GGGAC	9 cut(s)	180, 329, 882, 1658, 1982, 2195, 2210, 2317, 2437
BslI	CCNNNNNNNGG	7 cut(s)	424, 878, 1106, 1710, 1986, 2258, 2377
BsmAI	GTCTC	7 cut(s)	141, 464, 918, 1135, 1918, 2093, 2399
BsmBI	CGTCTC	1 cut(s)	2399
BsmFI	GGGAC	9 cut(s)	180, 329, 882, 1658, 1982, 2195, 2210, 2317, 2437
Bso31I	GGTCTC	2 cut(s)	464, 1918
BsoBI	CYCGRG	1 cut(s)	1839
Bsp119I	TTCGAA	1 cut(s)	1202
Bsp120I	GGGCCC	2 cut(s)	1988, 2249
Bsp13I	TCCGGA	1 cut(s)	424
Bsp1407I	TGTACA	1 cut(s)	722
Bsp143I	GATC	7 cut(s)	281, 319, 681, 959, 2088, 2355, 2442
Bsp1720I	GCTNAGC	3 cut(s)	114, 449, 1883
Bsp19I	CCATGG	3 cut(s)	774, 864, 990
Bsp68I	TCGCGA	1 cut(s)	1431
BspDI	ATCGAT	2 cut(s)	962, 1207
BspEI	TCCGGA	1 cut(s)	424
BspFNI	CGCG	5 cut(s)	1431, 1683, 2055, 2138, 2247
BspHI	TCATGA	2 cut(s)	1833, 2169
BspMAI	CTGCAG	1 cut(s)	1466
BspPI	GGATC	4 cut(s)	276, 689, 2083, 2350
BspT104I	TTCGAA	1 cut(s)	1202
BspT107I	GGYRCC	1 cut(s)	2267
BspTNI	GGTCTC	2 cut(s)	464, 1918
BsrBI	CCGCTC	2 cut(s)	578, 2328
BsrDI	GCAATG	3 cut(s)	829, 850, 2293
BsrFI	RCCGGY	4 cut(s)	32, 945, 1909, 2374
BsrGI	TGTACA	1 cut(s)	722
BsrI	ACTGG	4 cut(s)	531, 732, 1266, 2141
BssAI	RCCGGY	4 cut(s)	32, 945, 1909, 2374
BssMI	GATC	7 cut(s)	281, 319, 681, 959, 2088, 2355, 2442
BssNI	GRCGYC	4 cut(s)	1422, 1824, 2268, 2450
BssSI	CACGAG	1 cut(s)	272
BssT1I	CCWWGG	5 cut(s)	774, 864, 990, 2016, 2074
Bst2BI	CACGAG	1 cut(s)	272
Bst2UI	CCWGG	5 cut(s)	764, 1227, 1649, 2024, 2238
Bst4CI	ACNGT	7 cut(s)	29, 1614, 1780, 2312, 2392, 2410, 2434
BstACI	GRCGYC	4 cut(s)	1422, 1824, 2268, 2450
BstAPI	GCANNNNNTGC	1 cut(s)	1498
BstAUI	TGTACA	1 cut(s)	722
BstBAI	YACGTR	1 cut(s)	2164
BstBI	TTCGAA	1 cut(s)	1202
BstDSI	CCRYGG	3 cut(s)	774, 864, 990
BstFNI	CGCG	5 cut(s)	1431, 1683, 2055, 2138, 2247
BstH2I	RGCGCY	4 cut(s)	404, 1608, 1890, 2271
BstHHI	GCGC	7 cut(s)	403, 1607, 1735, 1889, 2057, 2140, 2270
BstKTI	GATC	7 cut(s)	284, 322, 684, 962, 2091, 2358, 2445
BstMAI	GTCTC	7 cut(s)	141, 464, 918, 1135, 1918, 2093, 2399
BstMBI	GATC	7 cut(s)	281, 319, 681, 959, 2088, 2355, 2442
BstMCI	CGRYCG	1 cut(s)	950
BstNI	CCWGG	5 cut(s)	764, 1227, 1649, 2024, 2238
BstNSI	RCATGY	7 cut(s)	97, 589, 1313, 1501, 1538, 1723, 2086
BstSFI	CTRYAG	1 cut(s)	1462
BstSLI	GKGCMC	5 cut(s)	419, 1297, 1447, 1992, 2253
BstUI	CGCG	5 cut(s)	1431, 1683, 2055, 2138, 2247
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	2 cut(s)	281, 2355
BstXI	CCANNNNNNTGG	2 cut(s)	1273, 2164
BstYI	RGATCY	2 cut(s)	281, 2355
Bsu15I	ATCGAT	2 cut(s)	962, 1207
BsuTUI	ATCGAT	2 cut(s)	962, 1207
BtgI	CCRYGG	3 cut(s)	774, 864, 990
BtgZI	GCGATG	1 cut(s)	1996
BtrI	CACGTC	1 cut(s)	1411
BtsI	GCAGTG	2 cut(s)	1689, 1698
BtsIMutI	CAGTG	4 cut(s)	725, 1273, 1689, 1698
BtuMI	TCGCGA	1 cut(s)	1431
CciI	TCATGA	2 cut(s)	1833, 2169
CfoI	GCGC	7 cut(s)	403, 1607, 1735, 1889, 2057, 2140, 2270
Cfr10I	RCCGGY	4 cut(s)	32, 945, 1909, 2374
ClaI	ATCGAT	2 cut(s)	962, 1207
CseI	GACGC	4 cut(s)	529, 608, 2120, 2439
Csp6I	GTAC	4 cut(s)	30, 723, 1510, 2134
CspAI	ACCGGT	1 cut(s)	945
CviQI	GTAC	4 cut(s)	30, 723, 1510, 2134
DinI	GGCGCC	1 cut(s)	2269
DpnI	GATC	7 cut(s)	283, 321, 683, 961, 2090, 2357, 2444
DpnII	GATC	7 cut(s)	281, 319, 681, 959, 2088, 2355, 2442
DraIII	CACNNNGTG	1 cut(s)	1874
DrdI	GACNNNNNNGTC	3 cut(s)	1823, 1829, 2395
DseDI	GACNNNNNNGTC	3 cut(s)	1823, 1829, 2395
EaeI	YGGCCR	3 cut(s)	219, 729, 2154
EciI	GGCGGA	1 cut(s)	2176
Ecl136II	GAGCTC	3 cut(s)	448, 795, 808
Eco130I	CCWWGG	5 cut(s)	774, 864, 990, 2016, 2074
Eco24I	GRGCYC	6 cut(s)	450, 797, 810, 1029, 1992, 2253
Eco31I	GGTCTC	2 cut(s)	464, 1918
Eco47I	GGWCC	7 cut(s)	635, 712, 869, 1791, 2026, 2331, 2434
Eco47III	AGCGCT	2 cut(s)	402, 1888
Eco53kI	GAGCTC	3 cut(s)	448, 795, 808
Eco57I	CTGAAG	1 cut(s)	1745
Eco72I	CACGTG	1 cut(s)	2164
Eco88I	CYCGRG	1 cut(s)	1839
EcoICRI	GAGCTC	3 cut(s)	448, 795, 808
EcoO109I	RGGNCCY	4 cut(s)	779, 869, 2026, 2331
EcoRII	CCWGG	5 cut(s)	762, 1225, 1647, 2022, 2236
EcoT14I	CCWWGG	5 cut(s)	774, 864, 990, 2016, 2074
EcoT22I	ATGCAT	1 cut(s)	1311
EcoT38I	GRGCYC	6 cut(s)	450, 797, 810, 1029, 1992, 2253
EgeI	GGCGCC	1 cut(s)	2269
EheI	GGCGCC	1 cut(s)	2269
ErhI	CCWWGG	5 cut(s)	774, 864, 990, 2016, 2074
Esp3I	CGTCTC	1 cut(s)	2399
FaqI	GGGAC	9 cut(s)	180, 329, 882, 1658, 1982, 2195, 2210, 2317, 2437
FblI	GTMKAC	1 cut(s)	1815
FriOI	GRGCYC	6 cut(s)	450, 797, 810, 1029, 1992, 2253
FspBI	CTAG	8 cut(s)	662, 743, 941, 971, 1143, 1284, 1515, 2126
GlaI	GCGC	7 cut(s)	402, 1606, 1734, 1888, 2056, 2139, 2269
HaeII	RGCGCY	4 cut(s)	404, 1608, 1890, 2271
HgaI	GACGC	4 cut(s)	529, 608, 2120, 2439
HhaI	GCGC	7 cut(s)	403, 1607, 1735, 1889, 2057, 2140, 2270
Hin1I	GRCGYC	4 cut(s)	1422, 1824, 2268, 2450
Hin6I	GCGC	7 cut(s)	401, 1605, 1733, 1887, 2055, 2138, 2268
HinP1I	GCGC	7 cut(s)	401, 1605, 1733, 1887, 2055, 2138, 2268
HincII	GTYRAC	4 cut(s)	1408, 1420, 1816, 2146
HindII	GTYRAC	4 cut(s)	1408, 1420, 1816, 2146
HindIII	AAGCTT	1 cut(s)	1796
HinfI	GANTC	9 cut(s)	54, 168, 592, 1148, 1199, 1204, 1837, 2183, 2396
HphI	GGTGA	3 cut(s)	1323, 2315, 2422
Hpy188I	TCNGA	8 cut(s)	575, 792, 812, 1017, 1109, 1135, 1642, 2355
Hpy99I	CGWCG	3 cut(s)	1817, 1820, 1856
HpyAV	CCTTC	6 cut(s)	246, 450, 694, 1050, 1485, 1637
HpyCH4III	ACNGT	7 cut(s)	29, 1614, 1780, 2312, 2392, 2410, 2434
HpyCH4IV	ACGT	7 cut(s)	1410, 1422, 1812, 1824, 2163, 2193, 2348
HpySE526I	ACGT	7 cut(s)	1410, 1422, 1812, 1824, 2163, 2193, 2348
Hsp92I	GRCGYC	4 cut(s)	1422, 1824, 2268, 2450
HspAI	GCGC	7 cut(s)	401, 1605, 1733, 1887, 2055, 2138, 2268
KasI	GGCGCC	1 cut(s)	2267
KflI	GGGWCCC	1 cut(s)	2331
Kpn2I	TCCGGA	1 cut(s)	424
KroI	GCCGGC	1 cut(s)	2374
KroNI	GCCGGC	1 cut(s)	2376
Kzo9I	GATC	7 cut(s)	281, 319, 681, 959, 2088, 2355, 2442
LmnI	GCTCC	9 cut(s)	255, 445, 576, 800, 805, 819, 1476, 1716, 1959
LweI	GCATC	5 cut(s)	316, 682, 1113, 1296, 1781
MaeI	CTAG	8 cut(s)	662, 743, 941, 971, 1143, 1284, 1515, 2126
MaeII	ACGT	7 cut(s)	1410, 1422, 1812, 1824, 2163, 2193, 2348
MaeIII	GTNAC	6 cut(s)	127, 208, 359, 596, 931, 1519
MalI	GATC	7 cut(s)	283, 321, 683, 961, 2090, 2357, 2444
MbiI	CCGCTC	2 cut(s)	578, 2328
MboI	GATC	7 cut(s)	281, 319, 681, 959, 2088, 2355, 2442
MboII	GAAGA	4 cut(s)	278, 364, 529, 2452
MfeI	CAATTG	1 cut(s)	906
MflI	RGATCY	2 cut(s)	281, 2355
MluCI	AATT	7 cut(s)	485, 615, 625, 642, 906, 998, 1357
Mly113I	GGCGCC	1 cut(s)	2268
MlyI	GAGTC	5 cut(s)	162, 1157, 1831, 2177, 2405
MmeI	TCCRAC	3 cut(s)	690, 1194, 2004
Mph1103I	ATGCAT	1 cut(s)	1311
MroI	TCCGGA	1 cut(s)	424
MroNI	GCCGGC	1 cut(s)	2374
MseI	TTAA	5 cut(s)	462, 1005, 1175, 1583, 1800
MslI	CAYNNNNRTG	4 cut(s)	426, 1256, 1658, 2162
MspA1I	CMGCKG	3 cut(s)	332, 1707, 1738
MunI	CAATTG	1 cut(s)	906
MvaI	CCWGG	5 cut(s)	764, 1227, 1649, 2024, 2238
MvnI	CGCG	5 cut(s)	1431, 1683, 2055, 2138, 2247
NaeI	GCCGGC	1 cut(s)	2376
NarI	GGCGCC	1 cut(s)	2268
NciI	CCSGG	8 cut(s)	165, 286, 1807, 1829, 1860, 1872, 2031, 2212
NcoI	CCATGG	3 cut(s)	774, 864, 990
NdeII	GATC	7 cut(s)	281, 319, 681, 959, 2088, 2355, 2442
NgoMIV	GCCGGC	1 cut(s)	2374
NmeAIII	GCCGAG	2 cut(s)	247, 951
NmuCI	GTSAC	3 cut(s)	208, 596, 931
NruI	TCGCGA	1 cut(s)	1431
NsiI	ATGCAT	1 cut(s)	1311
NspI	RCATGY	7 cut(s)	97, 589, 1313, 1501, 1538, 1723, 2086
NspV	TTCGAA	1 cut(s)	1202
OliI	CACNNNNGTG	1 cut(s)	1256
PaeI	GCATGC	4 cut(s)	1313, 1538, 1723, 2086
PagI	TCATGA	2 cut(s)	1833, 2169
PciI	ACATGT	1 cut(s)	585
PcsI	WCGNNNNNNNCGW	5 cut(s)	1389, 1428, 1809, 1821, 1860
PdiI	GCCGGC	1 cut(s)	2376
PfeI	GAWTC	4 cut(s)	54, 592, 1199, 1204
PfoI	TCCNGGA	2 cut(s)	163, 284
PinAI	ACCGGT	1 cut(s)	945
PleI	GAGTC	5 cut(s)	162, 1156, 1831, 2177, 2404
PluTI	GGCGCC	1 cut(s)	2271
PmaCI	CACGTG	1 cut(s)	2164
PmlI	CACGTG	1 cut(s)	2164
PpsI	GAGTC	5 cut(s)	162, 1156, 1831, 2177, 2404
Ppu21I	YACGTR	1 cut(s)	2164
PpuMI	RGGWCCY	3 cut(s)	869, 2026, 2331
PscI	ACATGT	1 cut(s)	585
Psp124BI	GAGCTC	3 cut(s)	450, 797, 810
Psp5II	RGGWCCY	3 cut(s)	869, 2026, 2331
Psp6I	CCWGG	5 cut(s)	762, 1225, 1647, 2022, 2236
PspCI	CACGTG	1 cut(s)	2164
PspGI	CCWGG	5 cut(s)	762, 1225, 1647, 2022, 2236
PspOMI	GGGCCC	2 cut(s)	1988, 2249
PspPPI	RGGWCCY	3 cut(s)	869, 2026, 2331
PstI	CTGCAG	1 cut(s)	1466
PsuI	RGATCY	2 cut(s)	281, 2355
RruI	TCGCGA	1 cut(s)	1431
RsaI	GTAC	4 cut(s)	31, 724, 1511, 2135
RsaNI	GTAC	4 cut(s)	30, 723, 1510, 2134
RseI	CAYNNNNRTG	4 cut(s)	426, 1256, 1658, 2162
SacI	GAGCTC	3 cut(s)	450, 797, 810
SalI	GTCGAC	1 cut(s)	1814
SaqAI	TTAA	5 cut(s)	462, 1005, 1175, 1583, 1800
Sau3AI	GATC	7 cut(s)	281, 319, 681, 959, 2088, 2355, 2442
SchI	GAGTC	5 cut(s)	162, 1157, 1831, 2177, 2405
SfaNI	GCATC	5 cut(s)	316, 682, 1113, 1296, 1781
SfcI	CTRYAG	1 cut(s)	1462
SfoI	GGCGCC	1 cut(s)	2269
SfuI	TTCGAA	1 cut(s)	1202
SgrDI	CGTCGACG	1 cut(s)	1814
SinI	GGWCC	7 cut(s)	635, 712, 869, 1791, 2026, 2331, 2434
SmiMI	CAYNNNNRTG	4 cut(s)	426, 1256, 1658, 2162
SphI	GCATGC	4 cut(s)	1313, 1538, 1723, 2086
Sse9I	AATT	7 cut(s)	485, 615, 625, 642, 906, 998, 1357
SspDI	GGCGCC	1 cut(s)	2267
SspMI	CTAG	8 cut(s)	662, 743, 941, 971, 1143, 1284, 1515, 2126
SstI	GAGCTC	3 cut(s)	450, 797, 810
StyI	CCWWGG	5 cut(s)	774, 864, 990, 2016, 2074
TaaI	ACNGT	7 cut(s)	29, 1614, 1780, 2312, 2392, 2410, 2434
TaiI	ACGT	7 cut(s)	1413, 1425, 1815, 1827, 2166, 2196, 2351
TaqII	GACCGA	2 cut(s)	729, 1888
TasI	AATT	7 cut(s)	485, 615, 625, 642, 906, 998, 1357
TatI	WGTACW	1 cut(s)	722
TauI	GCSGC	2 cut(s)	332, 2295
TfiI	GAWTC	4 cut(s)	54, 592, 1199, 1204
Tru1I	TTAA	5 cut(s)	462, 1005, 1175, 1583, 1800
Tru9I	TTAA	5 cut(s)	462, 1005, 1175, 1583, 1800
TscAI	CASTG	4 cut(s)	732, 1273, 1696, 1705
TseFI	GTSAC	3 cut(s)	208, 596, 931
Tsp45I	GTSAC	3 cut(s)	208, 596, 931
TspDTI	ATGAA	6 cut(s)	530, 747, 1011, 1472, 1563, 2186
TspGWI	ACGGA	2 cut(s)	1355, 1660
TspRI	CASTG	4 cut(s)	732, 1273, 1696, 1705
VneI	GTGCAC	2 cut(s)	1293, 1443
VpaK11BI	GGWCC	7 cut(s)	635, 712, 869, 1791, 2026, 2331, 2434
XapI	RAATTY	1 cut(s)	485
XbaI	TCTAGA	1 cut(s)	970
XceI	RCATGY	7 cut(s)	97, 589, 1313, 1501, 1538, 1723, 2086
XcmI	CCANNNNNNNNNTGG	3 cut(s)	760, 997, 1999
XmiI	GTMKAC	1 cut(s)	1815
XspI	CTAG	8 cut(s)	662, 743, 941, 971, 1143, 1284, 1515, 2126
ZraI	GACGTC	2 cut(s)	1423, 1825
Zsp2I	ATGCAT	1 cut(s)	1311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.