Rorug01G0230700

Homeobox-leucine zipper protein ANTHOCYANINLESS

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
33281342 .. 33281904
563 bp
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UTR
Exon/CDS
Intron
Rorug01G0230700.1

Sequence Viewer

Length: 258 bp
ATGGATATAGCTGCATTGGGGTTTTGTCTTCAATTTAGTGCTGTGGTTTTCCTTCTATTGAAATGGATTTATGTGTTGGGACGGCTTATGTTCAAAAAGGAGTTTGACAGCAGCTATGGGGGATTTATGAAGGATGGAGCTAAGTGGTTGGTGGAGAACACTGAAATCCTTCTTTGTATGCAGCTATCTCCAGTGGCTGGATTTGTGAAATACAAAGTGGGTGTTAGCAACTGGAATTTTATTTGCTGTAGCAGTTGA

Protein Analysis

85

Amino Acids

9.62

Weight (kDa)

8.4

Isoelectric Point (pI)

33.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 197
AcsI RAATTY 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 3 cut(s) 32, 61, 94
AluBI AGCT 4 cut(s) 11, 114, 140, 184
AluI AGCT 4 cut(s) 11, 114, 140, 184
AlwNI CAGNNNCTG 1 cut(s) 197
ApeKI GCWGC 3 cut(s) 11, 111, 181
ApoI RAATTY 1 cut(s) 235
Asp700I GAANNNNTTC 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 20
BbvI GCAGC 2 cut(s) 123, 193
BccI CCATC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 247
BisI GCNGC 3 cut(s) 12, 112, 182
BlsI GCNGC 3 cut(s) 13, 113, 183
BpiI GAAGAC 1 cut(s) 20
BpmI CTGGAG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 2 cut(s) 191, 236
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 197
BseNI ACTGG 2 cut(s) 191, 236
BseXI GCAGC 2 cut(s) 123, 193
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 93
BsrI ACTGG 2 cut(s) 191, 236
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 247
BstV1I GCAGC 2 cut(s) 123, 193
BstV2I GAAGAC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 159, 198
CaiI CAGNNNCTG 1 cut(s) 197
CviJI RGCY 6 cut(s) 11, 85, 114, 140, 184, 197
CviKI_1 RGCY 6 cut(s) 11, 85, 114, 140, 184, 197
DdeI CTNAG 1 cut(s) 141
FaiI YATR 6 cut(s) 8, 72, 89, 117, 128, 179
FaqI GGGAC 1 cut(s) 93
Fnu4HI GCNGC 3 cut(s) 12, 112, 182
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 3 cut(s) 12, 112, 182
GluI GCNGC 3 cut(s) 12, 112, 182
GsuI CTGGAG 1 cut(s) 174
HpyAV CCTTC 3 cut(s) 62, 124, 179
HpyCH4V TGCA 2 cut(s) 14, 181
HpyF3I CTNAG 1 cut(s) 141
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 3 cut(s) 183, 204, 217
Lsp1109I GCAGC 2 cut(s) 123, 193
MboII GAAGA 1 cut(s) 20
MluCI AATT 2 cut(s) 32, 235
MroXI GAANNNNTTC 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 168
PflMI CCANNNNNTGG 1 cut(s) 197
PkrI GCNGC 3 cut(s) 13, 113, 183
PstNI CAGNNNCTG 1 cut(s) 197
SatI GCNGC 3 cut(s) 12, 112, 182
SetI ASST 4 cut(s) 13, 116, 142, 186
SfcI CTRYAG 1 cut(s) 247
SgeI CNNG 3 cut(s) 203, 210, 244
Sse9I AATT 2 cut(s) 32, 235
TasI AATT 2 cut(s) 32, 235
TscAI CASTG 2 cut(s) 166, 198
TseI GCWGC 3 cut(s) 11, 111, 181
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 2 cut(s) 166, 198
Van91I CCANNNNNTGG 1 cut(s) 197
XapI RAATTY 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.