Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008368

Physical Location & Seq

Genomic Coordinates Reverse (-)

8422002 .. 8426947

Gene Structure 4946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g07490.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2244 bp

ATGAGGCAAACAACGGCGGGAGAAGGAGCAGAGAGGAAGAACATGAGAGCAGATCTGGGAGTGATAACATGGATGGTGCTTCTGGGGATCGATCAAGATGCCGCTGACAACAACCCTCGTAAGAAGAAGCGTTACCACCGACACACCCCTCAGCAAATCCAAGAACTTGAAGCGCTGTTCAAAGAGTGCCCTCATCCTGATGAGAAGCAAAGATTGGAGCTCAGCAGAAGGCTTAACTTGGAGACCAGACAAGTCAAATTCTGGTTCCAAAATCGCCGAACCCAGATGAAGACGCAACTGGAACGCCATGAGAACTCGTTGCTGAGGCAAGAGAACGATAAGCTCCGAGCGGAGAACATGTCGATTCGTGACGCTATGAGGAACCCAATTTGCTCAAACTGTGGTGGTCCTGCAATTATTGGAGATATATCACTAGACGAGCAGCATCTCAGGATCGAAAATGCTCGATTGAAGGACGAGTTGGACCGAGTTTGTGCACTGGCCGGAAAGTTTCTAGGCCGACCCATTTCATCCCTGGCTACATCCATGGGGCCTCCGCTTCCGAGCTCCACTTTGGAGCTCGGAGTTGGGAGCAATGGGTTTGGTGGGATGAGCAATGTGGCTACATCAATATCCATGGGACCTGATTTTGGAGGTGGGATTGGGAGTGCTATGTCAATTGTGTCTCATGGTAGGCCGAGTGTGACGGGGCTAGACCGGTCGATAGAGAGATCGATGTTTCTAGAGCTTGCTTTGGCTGCCATGGATGAATTGGTTAAGATGGCTCAGACAGATGAGCCCCTTTGGCTGAGGAGTTTGGAGGGTGGACGGGAGGTTTTGAACCATGAGGAATACATGAGAAGTTTCACTCCTTGCATCGGATTGAAACCGAATGGTTTTGTCTCCGAGGCTTCTAGGGAGTCTGGAATGGTCATCATCAACAGCTTAACTCTTGTTGAAACTTTGATGGATTCGAATCGATGGTTGGAGATGTTTCCTGGCGTGATTGCAAGAACATCAACCACAGATGTGATTTCCAGTGGCATGGGAGGAACTAGAAATGGTGCACTTCAACTGATGCATGCTGAGTTGCAAGTCCTATCACCTTTGGTTCCGGTTCGTGAGGTCAATTTCCTCCGTTTCTGCAAGCAGCACGCAGAGGGCGTGTGGGCTGTGGTTGACGTGTCGGTTGACGTCATTCGCGACACCTCCAGTGCACCGACATTTATGAACTGCAGGAGGCTCCCTTCTGGCTGTGTTGTGCAAGACATGCCCAATGGGTACTCTAGGGTTACATGGGTTGAGCATGCGGAGTATGATGAAAGCCAAGTCCACCAGCTATACCGACCCTTGTTAAGTTCCGGCATGGGCTTCGGCGCTCAACGGTGGGTCGCCACCCTTCAACGCCAATCCGAGTGCCAGGCCATTCTTATGTCCTCCTCCGTCCCATCCCGCGACCACACTGCTATCACTACCAGCGGGAGGAGGAGCATGCTGAAGCTGGCGCAGCGGATGACAGACAACTTCTGTGCCGGAGTATGTGCATCGACCGTGCATAAATGGACCAAGCTTAACGCGGGGAACGTCGACGAGGACGTCCGGGTCATGACTCGGGAGAGCCTCGACGACCCCGGCGAGCCACCGGGTGTCGTGCTCAGCGCTGCCACTTCGGTCTGGCTGCCGGTCTCTCCGCAGAGGCTATTTGATTTCTTGCGTGATGAGCGGCTGAGGAGCGAGTGGGACATACTCTCCAACGGCGGGCCCATGCAGGAGATGGCCCACATCGCCAAGGGCCAGGACCCCGGCAACTGCGTTTCCCTCCTCCGCGCCAGAGCAAACGCAAACCAAGGCAGCATGCTGATCCTACAAGAGACACGCATAGACGCTGCGGGGTCGCTGGTGGTGTACGCGCCAGTTGACATTCCGGCCATGCACGTGGTCATGAACGGCGGAGACTCCGCGTACGTTGCTCTCCTGCCATCCGGGTTCGCAATCGTCCCTGATGGCCCAGGCTCGCGCGGGCCCATGTCCGGCAAAGGCACCACTCACGGCAGCAGCAACGGCGGCGGGTGCGGTGACGGCGGTGGCAATAGAGTGAGCGGGTCCCTCCTGACAATGACGTTTCAGATCCTTGTGAATAGCCTGCCGGCGGGCAAGCTGACCGTGGAGTCGGTGGAGACGGTGAACCACCTCATATCCTGCACGGTCCAGAAGATCAAGGCGTCCCTCCATTGTGAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042335 GO:0042545 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0045229 GO:0045595 GO:0045596 GO:0048364 GO:0048367 GO:0048437 GO:0048468 GO:0048469 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090627 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

748

Amino Acids

81.59

Weight (kDa)

6.44

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61150 AT4G00730 AT4G00730
fragaria_vesca	FvH4_7g13350 FvH4_7g13350
malus_domestica	MD01G1050200.v1.1 MD07G1127600.v1.1
prunus_persica	Prupe.2G156900_v2.0.a1 Prupe.2G156900_v2.0.a1
pyrus_communis	pycom01g07490 pycom07g12270
rosa_chinensis	RchiOBHm_Chr1g0352671
rosa_laevigata	RLG00000028322
rosa_multiflora	Rmu_co8513183.1_g000001 Rmu_sc0005118.1_g000003
rosa_roxburghii	Rroxscaffold_4G00302500
rosa_rugosa	Rorug01G0230700 Rorug01G0230800 Rorug01G0230900
rosa_samantha	Rh1AG243900 Rh1BG214500 Rh1CG227900 Rh1DG240600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	1595, 1601, 2167
AatII	GACGTC	2 cut(s)	1197, 1599
AccB1I	GGYRCC	1 cut(s)	2039
AccBSI	CCGCTC	3 cut(s)	350, 1723, 2100
AccI	GTMKAC	1 cut(s)	1587
AccII	CGCG	8 cut(s)	1203, 1455, 1577, 1827, 1910, 1961, 2017, 2019
AclWI	GGATC	4 cut(s)	95, 461, 1855, 2122
AcoI	YGGCCR	2 cut(s)	501, 1926
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	1517
AcvI	CACGTG	1 cut(s)	1936
AcyI	GRCGYC	3 cut(s)	1194, 1596, 2222
AdeI	CACNNNGTG	1 cut(s)	1646
AfaI	GTAC	3 cut(s)	1283, 1907, 1964
AfeI	AGCGCT	2 cut(s)	174, 1660
AfiI	CCNNNNNNNGG	6 cut(s)	650, 878, 1482, 1758, 2030, 2149
AflIII	ACRYGT	2 cut(s)	357, 1182
AgeI	ACCGGT	1 cut(s)	717
AgsI	TTSAA	8 cut(s)	170, 181, 472, 841, 886, 959, 1073, 1403
AjiI	CACGTC	1 cut(s)	1183
AjnI	CCWGG	5 cut(s)	534, 997, 1419, 1794, 2008
AjuI	GAANNNNNNNTTGG	6 cut(s)	197, 229, 464, 496, 968, 1000
AleI	CACNNNNGTG	1 cut(s)	1028
Alw21I	GWGCWC	7 cut(s)	222, 499, 569, 582, 1069, 1219, 1656
Alw26I	GTCTC	7 cut(s)	236, 690, 907, 1690, 1865, 1947, 2171
Alw44I	GTGCAC	3 cut(s)	495, 1065, 1215
AlwI	GGATC	4 cut(s)	95, 461, 1855, 2122
Ama87I	CYCGRG	1 cut(s)	1611
Aor51HI	AGCGCT	2 cut(s)	174, 1660
ApaI	GGGCCC	2 cut(s)	1764, 2025
ApaLI	GTGCAC	3 cut(s)	495, 1065, 1215
ApoI	RAATTY	1 cut(s)	257
AsiGI	ACCGGT	1 cut(s)	717
AspLEI	GCGC	7 cut(s)	175, 1379, 1507, 1661, 1829, 1912, 2019
AsuC2I	CCSGG	5 cut(s)	1601, 1632, 1644, 1803, 1984
AsuHPI	GGTGA	3 cut(s)	1095, 2087, 2194
AsuII	TTCGAA	1 cut(s)	974
AvaI	CYCGRG	1 cut(s)	1611
AvaII	GGWCC	7 cut(s)	407, 484, 641, 1563, 1798, 2103, 2206
BaeGI	GKGCMC	6 cut(s)	191, 499, 1069, 1219, 1764, 2025
BanI	GGYRCC	1 cut(s)	2039
BanII	GRGCYC	6 cut(s)	222, 569, 582, 801, 1764, 2025
BarI	GAAGNNNNNNTAC	2 cut(s)	116, 148
BbrPI	CACGTG	1 cut(s)	1936
BbsI	GAAGAC	1 cut(s)	296
Bbv12I	GWGCWC	7 cut(s)	222, 499, 569, 582, 1069, 1219, 1656
BbvCI	CCTCAGC	4 cut(s)	150, 323, 809, 1727
BccI	CCATC	8 cut(s)	67, 775, 961, 975, 1456, 1768, 1987, 1997
BceAI	ACGGC	6 cut(s)	30, 1771, 1963, 2065, 2077, 2095
BcgI	CGANNNNNNTGC	6 cut(s)	80, 114, 1354, 1388, 1445, 1479
BciT130I	CCWGG	5 cut(s)	536, 999, 1421, 1796, 2010
BcnI	CCSGG	5 cut(s)	1601, 1632, 1644, 1803, 1984
BcoDI	GTCTC	7 cut(s)	236, 690, 907, 1690, 1865, 1947, 2171
BfaI	CTAG	7 cut(s)	434, 515, 713, 743, 915, 1056, 1287
BfmI	CTRYAG	1 cut(s)	1234
BfoI	RGCGCY	3 cut(s)	176, 1380, 1662
BglI	GCCNNNNNGGC	1 cut(s)	805
BglII	AGATCT	1 cut(s)	52
BlpI	GCTNAGC	2 cut(s)	221, 1655
Bme18I	GGWCC	7 cut(s)	407, 484, 641, 1563, 1798, 2103, 2206
BmeT110I	CYCGRG	1 cut(s)	1611
BmgBI	CACGTC	1 cut(s)	1183
BmsI	GCATC	5 cut(s)	88, 454, 885, 1068, 1553
BpiI	GAAGAC	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	1195
Bpu10I	CCTNAGC	4 cut(s)	150, 323, 809, 1727
Bpu1102I	GCTNAGC	2 cut(s)	221, 1655
Bpu14I	TTCGAA	1 cut(s)	974
BpuMI	CCSGG	5 cut(s)	1601, 1632, 1644, 1803, 1984
Bsa29I	ATCGAT	3 cut(s)	90, 734, 979
BsaAI	YACGTR	1 cut(s)	1936
BsaBI	GATNNNNATC	1 cut(s)	975
BsaHI	GRCGYC	3 cut(s)	1194, 1596, 2222
BsaI	GGTCTC	2 cut(s)	236, 1690
BsaWI	WCCGGW	2 cut(s)	717, 1114
BsaXI	ACNNNNNCTCC	4 cut(s)	344, 374, 1733, 1763
Bsc4I	CCNNNNNNNGG	6 cut(s)	650, 878, 1482, 1758, 2030, 2149
Bse118I	RCCGGY	3 cut(s)	717, 1681, 2146
Bse1I	ACTGG	5 cut(s)	303, 504, 1038, 1212, 1913
Bse3DI	GCAATG	2 cut(s)	601, 622
Bse8I	GATNNNNATC	1 cut(s)	975
BseBI	CCWGG	5 cut(s)	536, 999, 1421, 1796, 2010
BseCI	ATCGAT	3 cut(s)	90, 734, 979
BseGI	GGATG	9 cut(s)	78, 193, 530, 542, 615, 772, 1448, 1518, 1979
BseJI	GATNNNNATC	1 cut(s)	975
BseLI	CCNNNNNNNGG	6 cut(s)	650, 878, 1482, 1758, 2030, 2149
BseMI	GCAATG	2 cut(s)	601, 622
BseMII	CTCAG	9 cut(s)	164, 235, 314, 463, 800, 800, 1077, 1669, 1718
BseNI	ACTGG	5 cut(s)	303, 504, 1038, 1212, 1913
BseRI	GAGGAG	6 cut(s)	826, 1429, 1498, 1501, 1744, 1811
BseSI	GKGCMC	6 cut(s)	191, 499, 1069, 1219, 1764, 2025
BsgI	GTGCAG	1 cut(s)	2185
Bsh1236I	CGCG	8 cut(s)	1203, 1455, 1577, 1827, 1910, 1961, 2017, 2019
Bsh1285I	CGRYCG	2 cut(s)	722, 1551
BshNI	GGYRCC	1 cut(s)	2039
BshTI	ACCGGT	1 cut(s)	717
BshVI	ATCGAT	3 cut(s)	90, 734, 979
BsiEI	CGRYCG	2 cut(s)	722, 1551
BsiHKAI	GWGCWC	7 cut(s)	222, 499, 569, 582, 1069, 1219, 1656
BsiHKCI	CYCGRG	1 cut(s)	1611
BsiWI	CGTACG	1 cut(s)	1962
BslFI	GGGAC	6 cut(s)	654, 1430, 1754, 1982, 2089, 2209
BslI	CCNNNNNNNGG	6 cut(s)	650, 878, 1482, 1758, 2030, 2149
BsmAI	GTCTC	7 cut(s)	236, 690, 907, 1690, 1865, 1947, 2171
BsmBI	CGTCTC	1 cut(s)	2171
BsmFI	GGGAC	6 cut(s)	654, 1430, 1754, 1982, 2089, 2209
Bso31I	GGTCTC	2 cut(s)	236, 1690
BsoBI	CYCGRG	1 cut(s)	1611
Bsp119I	TTCGAA	1 cut(s)	974
Bsp120I	GGGCCC	2 cut(s)	1760, 2021
Bsp143I	GATC	8 cut(s)	52, 87, 91, 453, 731, 1860, 2127, 2214
Bsp1720I	GCTNAGC	2 cut(s)	221, 1655
Bsp19I	CCATGG	3 cut(s)	546, 636, 762
Bsp68I	TCGCGA	1 cut(s)	1203
BspCNI	CTCAG	9 cut(s)	163, 234, 315, 462, 799, 801, 1078, 1668, 1719
BspDI	ATCGAT	3 cut(s)	90, 734, 979
BspFNI	CGCG	8 cut(s)	1203, 1455, 1577, 1827, 1910, 1961, 2017, 2019
BspHI	TCATGA	2 cut(s)	1605, 1941
BspMAI	CTGCAG	1 cut(s)	1238
BspPI	GGATC	4 cut(s)	95, 461, 1855, 2122
BspT104I	TTCGAA	1 cut(s)	974
BspT107I	GGYRCC	1 cut(s)	2039
BspTNI	GGTCTC	2 cut(s)	236, 1690
BsrBI	CCGCTC	3 cut(s)	350, 1723, 2100
BsrDI	GCAATG	2 cut(s)	601, 622
BsrFI	RCCGGY	3 cut(s)	717, 1681, 2146
BsrI	ACTGG	5 cut(s)	303, 504, 1038, 1212, 1913
BssAI	RCCGGY	3 cut(s)	717, 1681, 2146
BssMI	GATC	8 cut(s)	52, 87, 91, 453, 731, 1860, 2127, 2214
BssNI	GRCGYC	3 cut(s)	1194, 1596, 2222
BssT1I	CCWWGG	5 cut(s)	546, 636, 762, 1788, 1846
Bst2UI	CCWGG	5 cut(s)	536, 999, 1421, 1796, 2010
Bst4CI	ACNGT	6 cut(s)	401, 1386, 1552, 2164, 2182, 2206
BstACI	GRCGYC	3 cut(s)	1194, 1596, 2222
BstAPI	GCANNNNNTGC	1 cut(s)	1270
BstBAI	YACGTR	1 cut(s)	1936
BstBI	TTCGAA	1 cut(s)	974
BstDEI	CTNAG	9 cut(s)	150, 221, 323, 449, 786, 809, 1086, 1655, 1727
BstDSI	CCRYGG	4 cut(s)	546, 636, 762, 2163
BstF5I	GGATG	9 cut(s)	78, 193, 530, 542, 615, 772, 1448, 1518, 1979
BstFNI	CGCG	8 cut(s)	1203, 1455, 1577, 1827, 1910, 1961, 2017, 2019
BstH2I	RGCGCY	3 cut(s)	176, 1380, 1662
BstHHI	GCGC	7 cut(s)	175, 1379, 1507, 1661, 1829, 1912, 2019
BstKTI	GATC	8 cut(s)	55, 90, 94, 456, 734, 1863, 2130, 2217
BstMAI	GTCTC	7 cut(s)	236, 690, 907, 1690, 1865, 1947, 2171
BstMBI	GATC	8 cut(s)	52, 87, 91, 453, 731, 1860, 2127, 2214
BstMCI	CGRYCG	2 cut(s)	722, 1551
BstNI	CCWGG	5 cut(s)	536, 999, 1421, 1796, 2010
BstNSI	RCATGY	6 cut(s)	361, 1085, 1273, 1310, 1495, 1858
BstSFI	CTRYAG	1 cut(s)	1234
BstSLI	GKGCMC	6 cut(s)	191, 499, 1069, 1219, 1764, 2025
BstUI	CGCG	8 cut(s)	1203, 1455, 1577, 1827, 1910, 1961, 2017, 2019
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	2 cut(s)	52, 2127
BstXI	CCANNNNNNTGG	2 cut(s)	1045, 1936
BstYI	RGATCY	2 cut(s)	52, 2127
Bsu15I	ATCGAT	3 cut(s)	90, 734, 979
BsuTUI	ATCGAT	3 cut(s)	90, 734, 979
BtgI	CCRYGG	4 cut(s)	546, 636, 762, 2163
BtgZI	GCGATG	1 cut(s)	1768
BtrI	CACGTC	1 cut(s)	1183
BtsCI	GGATG	9 cut(s)	78, 193, 530, 542, 615, 772, 1448, 1518, 1979
BtsI	GCAGTG	1 cut(s)	1461
BtsIMutI	CAGTG	4 cut(s)	497, 1045, 1219, 1461
BtuMI	TCGCGA	1 cut(s)	1203
CciI	TCATGA	2 cut(s)	1605, 1941
CfoI	GCGC	7 cut(s)	175, 1379, 1507, 1661, 1829, 1912, 2019
Cfr10I	RCCGGY	3 cut(s)	717, 1681, 2146
ClaI	ATCGAT	3 cut(s)	90, 734, 979
CseI	GACGC	4 cut(s)	301, 380, 1892, 2211
Csp6I	GTAC	3 cut(s)	1282, 1906, 1963
CspAI	ACCGGT	1 cut(s)	717
CviQI	GTAC	3 cut(s)	1282, 1906, 1963
DdeI	CTNAG	9 cut(s)	150, 221, 323, 449, 786, 809, 1086, 1655, 1727
DpnI	GATC	8 cut(s)	54, 89, 93, 455, 733, 1862, 2129, 2216
DpnII	GATC	8 cut(s)	52, 87, 91, 453, 731, 1860, 2127, 2214
DraIII	CACNNNGTG	1 cut(s)	1646
DrdI	GACNNNNNNGTC	3 cut(s)	1595, 1601, 2167
DseDI	GACNNNNNNGTC	3 cut(s)	1595, 1601, 2167
EaeI	YGGCCR	2 cut(s)	501, 1926
EciI	GGCGGA	1 cut(s)	1965
Ecl136II	GAGCTC	3 cut(s)	220, 567, 580
Eco130I	CCWWGG	5 cut(s)	546, 636, 762, 1788, 1846
Eco24I	GRGCYC	6 cut(s)	222, 569, 582, 801, 1764, 2025
Eco31I	GGTCTC	2 cut(s)	236, 1690
Eco47I	GGWCC	7 cut(s)	407, 484, 641, 1563, 1798, 2103, 2206
Eco47III	AGCGCT	2 cut(s)	174, 1660
Eco53kI	GAGCTC	3 cut(s)	220, 567, 580
Eco57I	CTGAAG	1 cut(s)	1517
Eco72I	CACGTG	1 cut(s)	1936
Eco88I	CYCGRG	1 cut(s)	1611
EcoICRI	GAGCTC	3 cut(s)	220, 567, 580
EcoO109I	RGGNCCY	4 cut(s)	551, 641, 1798, 2103
EcoRII	CCWGG	5 cut(s)	534, 997, 1419, 1794, 2008
EcoT14I	CCWWGG	5 cut(s)	546, 636, 762, 1788, 1846
EcoT22I	ATGCAT	1 cut(s)	1083
EcoT38I	GRGCYC	6 cut(s)	222, 569, 582, 801, 1764, 2025
ErhI	CCWWGG	5 cut(s)	546, 636, 762, 1788, 1846
Esp3I	CGTCTC	1 cut(s)	2171
FaqI	GGGAC	6 cut(s)	654, 1430, 1754, 1982, 2089, 2209
FblI	GTMKAC	1 cut(s)	1587
FokI	GGATG	9 cut(s)	85, 180, 517, 529, 622, 779, 1435, 1525, 1966
FriOI	GRGCYC	6 cut(s)	222, 569, 582, 801, 1764, 2025
FspBI	CTAG	7 cut(s)	434, 515, 713, 743, 915, 1056, 1287
GlaI	GCGC	7 cut(s)	174, 1378, 1506, 1660, 1828, 1911, 2018
GsuI	CTGGAG	1 cut(s)	1195
HaeII	RGCGCY	3 cut(s)	176, 1380, 1662
HgaI	GACGC	4 cut(s)	301, 380, 1892, 2211
HhaI	GCGC	7 cut(s)	175, 1379, 1507, 1661, 1829, 1912, 2019
Hin1I	GRCGYC	3 cut(s)	1194, 1596, 2222
Hin6I	GCGC	7 cut(s)	173, 1377, 1505, 1659, 1827, 1910, 2017
HinP1I	GCGC	7 cut(s)	173, 1377, 1505, 1659, 1827, 1910, 2017
HincII	GTYRAC	4 cut(s)	1180, 1192, 1588, 1918
HindII	GTYRAC	4 cut(s)	1180, 1192, 1588, 1918
HindIII	AAGCTT	1 cut(s)	1568
HinfI	GANTC	7 cut(s)	364, 920, 971, 976, 1609, 1955, 2168
HphI	GGTGA	3 cut(s)	1095, 2087, 2194
Hpy188I	TCNGA	8 cut(s)	347, 564, 584, 789, 881, 907, 1414, 2127
Hpy99I	CGWCG	3 cut(s)	1589, 1592, 1628
HpyAV	CCTTC	5 cut(s)	17, 222, 466, 1257, 1409
HpyCH4III	ACNGT	6 cut(s)	401, 1386, 1552, 2164, 2182, 2206
HpyCH4IV	ACGT	7 cut(s)	1182, 1194, 1584, 1596, 1935, 1965, 2120
HpyF3I	CTNAG	9 cut(s)	150, 221, 323, 449, 786, 809, 1086, 1655, 1727
HpySE526I	ACGT	7 cut(s)	1182, 1194, 1584, 1596, 1935, 1965, 2120
Hsp92I	GRCGYC	3 cut(s)	1194, 1596, 2222
HspAI	GCGC	7 cut(s)	173, 1377, 1505, 1659, 1827, 1910, 2017
KflI	GGGWCCC	1 cut(s)	2103
KroI	GCCGGC	1 cut(s)	2146
KroNI	GCCGGC	1 cut(s)	2148
Kzo9I	GATC	8 cut(s)	52, 87, 91, 453, 731, 1860, 2127, 2214
LmnI	GCTCC	9 cut(s)	26, 217, 348, 572, 577, 591, 1248, 1488, 1731
LweI	GCATC	5 cut(s)	88, 454, 885, 1068, 1553
MaeI	CTAG	7 cut(s)	434, 515, 713, 743, 915, 1056, 1287
MaeII	ACGT	7 cut(s)	1182, 1194, 1584, 1596, 1935, 1965, 2120
MaeIII	GTNAC	5 cut(s)	131, 368, 703, 1291, 2075
MalI	GATC	8 cut(s)	54, 89, 93, 455, 733, 1862, 2129, 2216
MbiI	CCGCTC	3 cut(s)	350, 1723, 2100
MboI	GATC	8 cut(s)	52, 87, 91, 453, 731, 1860, 2127, 2214
MboII	GAAGA	4 cut(s)	49, 136, 301, 2224
MfeI	CAATTG	1 cut(s)	678
MflI	RGATCY	2 cut(s)	52, 2127
MluCI	AATT	6 cut(s)	257, 387, 414, 678, 770, 1129
MlyI	GAGTC	4 cut(s)	929, 1603, 1949, 2177
MmeI	TCCRAC	3 cut(s)	462, 966, 1776
Mph1103I	ATGCAT	1 cut(s)	1083
MroNI	GCCGGC	1 cut(s)	2146
MseI	TTAA	5 cut(s)	234, 777, 947, 1355, 1572
MslI	CAYNNNNRTG	4 cut(s)	198, 1028, 1430, 1934
MspA1I	CMGCKG	3 cut(s)	104, 1479, 1510
MunI	CAATTG	1 cut(s)	678
MvaI	CCWGG	5 cut(s)	536, 999, 1421, 1796, 2010
MvnI	CGCG	8 cut(s)	1203, 1455, 1577, 1827, 1910, 1961, 2017, 2019
NaeI	GCCGGC	1 cut(s)	2148
NciI	CCSGG	5 cut(s)	1601, 1632, 1644, 1803, 1984
NcoI	CCATGG	3 cut(s)	546, 636, 762
NdeII	GATC	8 cut(s)	52, 87, 91, 453, 731, 1860, 2127, 2214
NgoMIV	GCCGGC	1 cut(s)	2146
NmeAIII	GCCGAG	1 cut(s)	723
NmuCI	GTSAC	3 cut(s)	368, 703, 2075
NruI	TCGCGA	1 cut(s)	1203
NsiI	ATGCAT	1 cut(s)	1083
NspI	RCATGY	6 cut(s)	361, 1085, 1273, 1310, 1495, 1858
NspV	TTCGAA	1 cut(s)	974
OliI	CACNNNNGTG	1 cut(s)	1028
PaeI	GCATGC	4 cut(s)	1085, 1310, 1495, 1858
PagI	TCATGA	2 cut(s)	1605, 1941
PciI	ACATGT	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	5 cut(s)	1161, 1200, 1581, 1593, 1632
PdiI	GCCGGC	1 cut(s)	2148
PfeI	GAWTC	3 cut(s)	364, 971, 976
Pfl23II	CGTACG	1 cut(s)	1962
PinAI	ACCGGT	1 cut(s)	717
PleI	GAGTC	4 cut(s)	928, 1603, 1949, 2176
PmaCI	CACGTG	1 cut(s)	1936
PmlI	CACGTG	1 cut(s)	1936
PpsI	GAGTC	4 cut(s)	928, 1603, 1949, 2176
Ppu21I	YACGTR	1 cut(s)	1936
PpuMI	RGGWCCY	3 cut(s)	641, 1798, 2103
PscI	ACATGT	1 cut(s)	357
Psp124BI	GAGCTC	3 cut(s)	222, 569, 582
Psp5II	RGGWCCY	3 cut(s)	641, 1798, 2103
Psp6I	CCWGG	5 cut(s)	534, 997, 1419, 1794, 2008
PspCI	CACGTG	1 cut(s)	1936
PspGI	CCWGG	5 cut(s)	534, 997, 1419, 1794, 2008
PspLI	CGTACG	1 cut(s)	1962
PspOMI	GGGCCC	2 cut(s)	1760, 2021
PspPPI	RGGWCCY	3 cut(s)	641, 1798, 2103
PstI	CTGCAG	1 cut(s)	1238
PsuI	RGATCY	2 cut(s)	52, 2127
RruI	TCGCGA	1 cut(s)	1203
RsaI	GTAC	3 cut(s)	1283, 1907, 1964
RsaNI	GTAC	3 cut(s)	1282, 1906, 1963
RseI	CAYNNNNRTG	4 cut(s)	198, 1028, 1430, 1934
SacI	GAGCTC	3 cut(s)	222, 569, 582
SalI	GTCGAC	1 cut(s)	1586
SaqAI	TTAA	5 cut(s)	234, 777, 947, 1355, 1572
Sau3AI	GATC	8 cut(s)	52, 87, 91, 453, 731, 1860, 2127, 2214
SchI	GAGTC	4 cut(s)	929, 1603, 1949, 2177
SfaNI	GCATC	5 cut(s)	88, 454, 885, 1068, 1553
SfcI	CTRYAG	1 cut(s)	1234
SfuI	TTCGAA	1 cut(s)	974
SgrDI	CGTCGACG	1 cut(s)	1586
SinI	GGWCC	7 cut(s)	407, 484, 641, 1563, 1798, 2103, 2206
SmiMI	CAYNNNNRTG	4 cut(s)	198, 1028, 1430, 1934
SphI	GCATGC	4 cut(s)	1085, 1310, 1495, 1858
Sse9I	AATT	6 cut(s)	257, 387, 414, 678, 770, 1129
SspMI	CTAG	7 cut(s)	434, 515, 713, 743, 915, 1056, 1287
SstI	GAGCTC	3 cut(s)	222, 569, 582
StyI	CCWWGG	5 cut(s)	546, 636, 762, 1788, 1846
TaaI	ACNGT	6 cut(s)	401, 1386, 1552, 2164, 2182, 2206
TaiI	ACGT	7 cut(s)	1185, 1197, 1587, 1599, 1938, 1968, 2123
TaqII	GACCGA	2 cut(s)	501, 1660
TasI	AATT	6 cut(s)	257, 387, 414, 678, 770, 1129
TauI	GCSGC	3 cut(s)	104, 1726, 2067
TfiI	GAWTC	3 cut(s)	364, 971, 976
Tru1I	TTAA	5 cut(s)	234, 777, 947, 1355, 1572
Tru9I	TTAA	5 cut(s)	234, 777, 947, 1355, 1572
TscAI	CASTG	4 cut(s)	504, 1045, 1219, 1468
TseFI	GTSAC	3 cut(s)	368, 703, 2075
Tsp45I	GTSAC	3 cut(s)	368, 703, 2075
TspDTI	ATGAA	6 cut(s)	302, 519, 783, 1244, 1335, 1958
TspGWI	ACGGA	2 cut(s)	1127, 1432
TspRI	CASTG	4 cut(s)	504, 1045, 1219, 1468
VneI	GTGCAC	3 cut(s)	495, 1065, 1215
VpaK11BI	GGWCC	7 cut(s)	407, 484, 641, 1563, 1798, 2103, 2206
XapI	RAATTY	1 cut(s)	257
XbaI	TCTAGA	1 cut(s)	742
XceI	RCATGY	6 cut(s)	361, 1085, 1273, 1310, 1495, 1858
XcmI	CCANNNNNNNNNTGG	3 cut(s)	532, 769, 1771
XmiI	GTMKAC	1 cut(s)	1587
XspI	CTAG	7 cut(s)	434, 515, 713, 743, 915, 1056, 1287
ZraI	GACGTC	2 cut(s)	1195, 1597
Zsp2I	ATGCAT	1 cut(s)	1083

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.