Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008368

Physical Location & Seq

Genomic Coordinates Forward (+)

33286346 .. 33292270

Gene Structure 5925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0230900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2232 bp

ATGTCGGGTTTCAATTTCGGATCCTCCGCGGCCTCCGCTTCTCAATCCACTTCCCCTTTCGGATCCTCCACCCCTGCTTTCTCATTCGCCTCCTCCCCTTCCCTCTTCGGATCCTCCGCGCCCGCCACCGCCTCCACCGGGTTCGGACTCGGCTCCTCCTCTTTCGGCTCCGCTTCCTCAAACCCCTCCACCTCCTCCTCCCCTTTCAGCTTCTTATCCAACACCGCCCCCTCCCCCGCTTTCAGTACCCCAAACCCTAGCCCCGCCCCGAACCCGAACCCGAACCCATTTCCCTCATTCGGAGTCGGATCCTCCACCGCCGCAGCATCTACACCTTCATTCGGATTCAATCCCTCCACCGCCGGTTCAGGCTCCACTCCGTCGCAGCTTATGTTCGGCTCAACCGCACCCCAATCCCTGTTTGGCTCATCCTCATCGGCGCAGGCTCCGGGTTCTACCCCATCCTTATTCGGGTCAACTGCATCTGCCTCCGCTTCCGGCACTACCAGCTCTCCTCTGTTCGGCTCGGCTTCGGCGTCGGCTTCACCTTTGTTCGGGAGTACTACTACTTCTTCTTTCGCTCCCAGCACAGGCTCGGCTCTGTTTGGCTCATCCTCTTCATCGGCGGCGCCGCCCTCTTCCACCACTCCGAACTTGTTTGGCTCTGCTCCGTCGTCCGCGGCTCCAACCACTCCCTCGTTCCCAAGCTTTTCAAGCTCTTCCTCTGCAGCCCCAACCACTCCCTCATTCCCCAGCTTTTTGGGCTCTTCGTCTGCAGCATCAACCACTCCCACTCCCGCATTCCCATCCTTTTCGAGCTCTTCCGCTGCAGCCTCAACCACTCCTGCTTTCGGAGGCTTTTCGAGCTCTTCTTCTGCAGCTCCGGCCACTTCCTCGTTCGCAAGCTCTTCGGGGTTCTCATCATTCCCGAGTTCAGCTCCTGCTAAGCCCACAGCAGCATCCACACCTACTACTACGGCGCCTTCATCAAGCAGCGGTTTCAACCTCTCATTTGGAGCGCCCACATCCTCGGCTTCTCAACCTTCTTTTGGACTCAGCAATGCCGCCTCATCAGCCGCGGCGGCTTCCACCGCATTGTCATTTTCAAAGTCTTCATCGCCATTGTTTTCAACCGTCACGACCACCACGGCTTCTTCAACTCCGGCTGCAAGTAGTACTACTACACAAGCTCCTTTCTCTTTGTCGGCTTTCAATGTAACTCCTACTGCTCCTCCTGCTGCGAGCACCACTGCACTGACTTCAACGGCAGTGCCTGCCAGCTCAGCTGCTGCTTCATCAAGCACTACTACGAGTTCCTTTACAGGTTTCTCCTTAACACCTGCTTCTTCGGTGGCTACTGCTTCTTCTTCTGGCCTTTCATTGTTTTCCAGTGCCTCAGTGCCCGCCTCGTCATCACAAGCACAACCAAGCACCACTCTGCCTGCATTTGGTCTCACTACTTCAGCAACTGCAACTACCACTGCAACTACAATGACGACTGGTACCAGTACCTCTGCAGCTCCGACATCAAGTGCACTTGCTGTGGCTTCTACTAGTGGGACAACCTCAAATGTTAATGGCAGCACTACAGTATCTACGACAACACCAAAATTACCTTCTGAGATCACTGGGAAGACTGTTGAGGAGATTATCAAGGAGTGGAATGCTGAGCTTCAAGAGCGTACTGGAAAATTCCGAAAGCAGGCTAATGCAATAGCAGACTGGGACAGGAGGATTTTGCAGAACCGTGATGTTCTTCTTAGGCTCGAGATCGAAGTGGCAAATGTGGTAGATACCCAAGCTAAGGTGGAGCGGCAACTAGAGTTAATTGAGACTCATCAGCAAGAGGTCGATAAGGCTTTACAAAGCATGGAACAAGAAGCTGAGCGTATATACAAGGATGAGCGTGGATCGCTTCTTGATGATGAAGCTGCATCCACAAGAGATGCAATGTATGAGCAGGCTGAGTTTATAGAGAGGGAGCTAGAGCAGGTGACAGAGCAAATCAAATCAATTATTGAGACTGTAAATGCCAACCAGGGAGGAGAATTGGAAGTAAATGATGGGATGGCTCCACTAGATGTGGTTGTACGAATCTTAAACAACCAACTAAGCTCTTTAATGTGGATTGATGAAAAGGCCGAAGAGTTCTCTTCACGAATTCAGAAGCTTGCCAATCAAGGTCCTGCTGCAGATCGTGAATTGATGGGTCCAAGATACTGGATGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042335 GO:0042545 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0045229 GO:0045595 GO:0045596 GO:0048364 GO:0048367 GO:0048437 GO:0048468 GO:0048469 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090627 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

743

Amino Acids

74.16

Weight (kDa)

4.66

Isoelectric Point (pI)

59.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nsp1_C	PF05064	533 - 636	6.6e-22	Nsp1-like C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61150 AT4G00730 AT4G00730
fragaria_vesca	FvH4_7g13350 FvH4_7g13350
malus_domestica	MD01G1050200.v1.1 MD07G1127600.v1.1
prunus_persica	Prupe.2G156900_v2.0.a1 Prupe.2G156900_v2.0.a1
pyrus_communis	pycom01g07490 pycom07g12270
rosa_chinensis	RchiOBHm_Chr1g0352671
rosa_laevigata	RLG00000028322
rosa_multiflora	Rmu_co8513183.1_g000001 Rmu_sc0005118.1_g000003
rosa_roxburghii	Rroxscaffold_4G00302500
rosa_rugosa	Rorug01G0230700 Rorug01G0230800 Rorug01G0230900
rosa_samantha	Rh1AG243900 Rh1BG214500 Rh1CG227900 Rh1DG240600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1348, 1981
Acc36I	ACCTGC	2 cut(s)	1348, 1981
Acc65I	GGTACC	1 cut(s)	1502
AccB1I	GGYRCC	3 cut(s)	628, 979, 1502
AccBSI	CCGCTC	1 cut(s)	1813
AccII	CGCG	4 cut(s)	29, 119, 680, 1079
AclWI	GGATC	9 cut(s)	15, 28, 57, 70, 105, 118, 303, 316, 1918
AcoI	YGGCCR	1 cut(s)	885
AcsI	RAATTY	2 cut(s)	1691, 2160
AcuI	CTGAAG	1 cut(s)	1446
AcyI	GRCGYC	3 cut(s)	536, 629, 980
AfaI	GTAC	7 cut(s)	247, 562, 1177, 1504, 1510, 1684, 2091
AhlI	ACTAGT	1 cut(s)	1553
AjnI	CCWGG	1 cut(s)	2037
AjuI	GAANNNNNNNTTGG	2 cut(s)	1600, 1632
Alw21I	GWGCWC	4 cut(s)	821, 869, 1247, 1537
Alw26I	GTCTC	3 cut(s)	1457, 1826, 2015
Alw44I	GTGCAC	1 cut(s)	1533
AlwI	GGATC	9 cut(s)	15, 28, 57, 70, 105, 118, 303, 316, 1918
AlwNI	CAGNNNCTG	4 cut(s)	941, 1274, 1289, 1469
Ama87I	CYCGRG	2 cut(s)	928, 1766
AoxI	GGCC	4 cut(s)	30, 885, 1372, 2139
ApaLI	GTGCAC	1 cut(s)	1533
ApoI	RAATTY	2 cut(s)	1691, 2160
Asp718I	GGTACC	1 cut(s)	1502
AspLEI	GCGC	5 cut(s)	121, 442, 631, 982, 1021
AspS9I	GGNCC	2 cut(s)	2183, 2210
AsuC2I	CCSGG	2 cut(s)	139, 450
AsuHPI	GGTGA	2 cut(s)	537, 2005
AvaI	CYCGRG	2 cut(s)	928, 1766
AvaII	GGWCC	2 cut(s)	2183, 2210
BaeGI	GKGCMC	2 cut(s)	1404, 1537
BaeI	ACNNNNGTAYC	2 cut(s)	1575, 1608
BamHI	GGATCC	4 cut(s)	20, 62, 110, 308
BanI	GGYRCC	3 cut(s)	628, 979, 1502
BanII	GRGCYC	3 cut(s)	767, 821, 869
BarI	GAAGNNNNNNTAC	2 cut(s)	553, 585
BbsI	GAAGAC	2 cut(s)	1104, 1640
Bbv12I	GWGCWC	4 cut(s)	821, 869, 1247, 1537
BccI	CCATC	5 cut(s)	469, 814, 2057, 2062, 2200
BceAI	ACGGC	3 cut(s)	993, 1164, 1281
BcgI	CGANNNNNNTGC	2 cut(s)	891, 925
BciT130I	CCWGG	1 cut(s)	2039
BcnI	CCSGG	2 cut(s)	139, 450
BcoDI	GTCTC	3 cut(s)	1457, 1826, 2015
BcuI	ACTAGT	1 cut(s)	1553
BfaI	CTAG	5 cut(s)	258, 1554, 1820, 1985, 2078
BfmI	CTRYAG	7 cut(s)	726, 774, 828, 876, 1515, 1587, 2190
BfoI	RGCGCY	3 cut(s)	632, 983, 1022
BfuAI	ACCTGC	2 cut(s)	1348, 1981
BglI	GCCNNNNNGGC	1 cut(s)	1082
BlpI	GCTNAGC	4 cut(s)	945, 1282, 1668, 1884
BmcAI	AGTACT	2 cut(s)	562, 1177
Bme1390I	CCNGG	3 cut(s)	139, 450, 2039
Bme18I	GGWCC	2 cut(s)	2183, 2210
BmeT110I	CYCGRG	2 cut(s)	928, 1766
BmgT120I	GGNCC	2 cut(s)	2183, 2210
BmrFI	CCNGG	3 cut(s)	139, 450, 2039
BmrI	ACTGGG	2 cut(s)	1638, 1732
BmsI	GCATC	6 cut(s)	335, 491, 788, 968, 1936, 1943
BmuI	ACTGGG	2 cut(s)	1638, 1732
BpiI	GAAGAC	2 cut(s)	1104, 1640
BplI	GAGNNNNNCTC	2 cut(s)	922, 954
Bpu10I	CCTNAGC	1 cut(s)	1803
Bpu1102I	GCTNAGC	4 cut(s)	945, 1282, 1668, 1884
BpuMI	CCSGG	2 cut(s)	139, 450
BsaHI	GRCGYC	3 cut(s)	536, 629, 980
BsaI	GGTCTC	1 cut(s)	1457
BsaJI	CCNNGG	6 cut(s)	27, 678, 1029, 1077, 1146, 2038
BsaXI	ACNNNNNCTCC	8 cut(s)	496, 526, 778, 808, 1174, 1204, 1216, 1246
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	7 cut(s)	1389, 1504, 1506, 1633, 1690, 1727, 2225
Bse3DI	GCAATG	2 cut(s)	1066, 1956
BseBI	CCWGG	1 cut(s)	2039
BseDI	CCNNGG	6 cut(s)	27, 678, 1029, 1077, 1146, 2038
BseMI	GCAATG	2 cut(s)	1066, 1956
BseMII	CTCAG	7 cut(s)	1069, 1296, 1410, 1611, 1659, 1875, 1956
BseNI	ACTGG	7 cut(s)	1389, 1504, 1506, 1633, 1690, 1727, 2225
BseRI	GAGGAG	9 cut(s)	82, 145, 148, 184, 187, 504, 1221, 1658, 2058
BseSI	GKGCMC	2 cut(s)	1404, 1537
BseYI	CCCAGC	2 cut(s)	584, 752
BsgI	GTGCAG	1 cut(s)	1236
Bsh1236I	CGCG	4 cut(s)	29, 119, 680, 1079
BshFI	GGCC	4 cut(s)	32, 887, 1374, 2141
BshNI	GGYRCC	3 cut(s)	628, 979, 1502
BsiHKAI	GWGCWC	4 cut(s)	821, 869, 1247, 1537
BsiHKCI	CYCGRG	2 cut(s)	928, 1766
BsiSI	CCGG	6 cut(s)	138, 363, 449, 498, 884, 1163
BslFI	GGGAC	2 cut(s)	1573, 1739
BsmAI	GTCTC	3 cut(s)	1457, 1826, 2015
BsmFI	GGGAC	2 cut(s)	1573, 1739
BsmI	GAATGC	2 cut(s)	800, 1669
BsnI	GGCC	4 cut(s)	32, 887, 1374, 2141
Bso31I	GGTCTC	1 cut(s)	1457
BsoBI	CYCGRG	2 cut(s)	928, 1766
Bsp1286I	GDGCHC	6 cut(s)	767, 821, 869, 1247, 1404, 1537
Bsp143I	GATC	8 cut(s)	20, 62, 110, 308, 1623, 1770, 1910, 2194
Bsp1720I	GCTNAGC	4 cut(s)	945, 1282, 1668, 1884
BspANI	GGCC	4 cut(s)	32, 887, 1374, 2141
BspCNI	CTCAG	7 cut(s)	1068, 1295, 1409, 1612, 1660, 1876, 1957
BspFNI	CGCG	4 cut(s)	29, 119, 680, 1079
BspHI	TCATGA	1 cut(s)	2228
BspMAI	CTGCAG	6 cut(s)	730, 778, 832, 880, 1519, 2194
BspMI	ACCTGC	2 cut(s)	1348, 1981
BspPI	GGATC	9 cut(s)	15, 28, 57, 70, 105, 118, 303, 316, 1918
BspQI	GCTCTTC	5 cut(s)	724, 772, 826, 874, 913
BspT107I	GGYRCC	3 cut(s)	628, 979, 1502
BspTNI	GGTCTC	1 cut(s)	1457
BsrBI	CCGCTC	1 cut(s)	1813
BsrDI	GCAATG	2 cut(s)	1066, 1956
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	7 cut(s)	1389, 1504, 1506, 1633, 1690, 1727, 2225
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	6 cut(s)	27, 678, 1029, 1077, 1146, 2038
BssMI	GATC	8 cut(s)	20, 62, 110, 308, 1623, 1770, 1910, 2194
BssNI	GRCGYC	3 cut(s)	536, 629, 980
Bst2UI	CCWGG	1 cut(s)	2039
Bst4CI	ACNGT	5 cut(s)	1135, 1591, 1639, 1748, 2026
BstACI	GRCGYC	3 cut(s)	536, 629, 980
BstAPI	GCANNNNNTGC	1 cut(s)	1274
BstDSI	CCRYGG	4 cut(s)	27, 678, 1077, 1146
BstFNI	CGCG	4 cut(s)	29, 119, 680, 1079
BstH2I	RGCGCY	3 cut(s)	632, 983, 1022
BstHHI	GCGC	5 cut(s)	121, 442, 631, 982, 1021
BstKTI	GATC	8 cut(s)	23, 65, 113, 311, 1626, 1773, 1913, 2197
BstMAI	GTCTC	3 cut(s)	1457, 1826, 2015
BstMBI	GATC	8 cut(s)	20, 62, 110, 308, 1623, 1770, 1910, 2194
BstNI	CCWGG	1 cut(s)	2039
BstSCI	CCNGG	3 cut(s)	137, 448, 2037
BstSFI	CTRYAG	7 cut(s)	726, 774, 828, 876, 1515, 1587, 2190
BstSLI	GKGCMC	2 cut(s)	1404, 1537
BstUI	CGCG	4 cut(s)	29, 119, 680, 1079
BstV2I	GAAGAC	2 cut(s)	1104, 1640
BstX2I	RGATCY	4 cut(s)	20, 62, 110, 308
BstXI	CCANNNNNNTGG	2 cut(s)	760, 2220
BstYI	RGATCY	4 cut(s)	20, 62, 110, 308
BsuRI	GGCC	4 cut(s)	32, 887, 1374, 2141
BtgI	CCRYGG	4 cut(s)	27, 678, 1077, 1146
BtgZI	GCGATG	1 cut(s)	1101
BtsI	GCAGTG	3 cut(s)	1248, 1275, 1479
BtsIMutI	CAGTG	7 cut(s)	1248, 1253, 1275, 1396, 1404, 1479, 1626
BveI	ACCTGC	2 cut(s)	1348, 1981
CaiI	CAGNNNCTG	4 cut(s)	941, 1274, 1289, 1469
CciI	TCATGA	1 cut(s)	2228
CfoI	GCGC	5 cut(s)	121, 442, 631, 982, 1021
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	2 cut(s)	2183, 2210
Cfr42I	CCGCGG	3 cut(s)	30, 681, 1080
CseI	GACGC	1 cut(s)	525
Csp6I	GTAC	7 cut(s)	246, 561, 1176, 1503, 1509, 1683, 2090
CviAII	CATG	2 cut(s)	1870, 2229
CviQI	GTAC	7 cut(s)	246, 561, 1176, 1503, 1509, 1683, 2090
DinI	GGCGCC	2 cut(s)	630, 981
DpnI	GATC	8 cut(s)	22, 64, 112, 310, 1625, 1772, 1912, 2196
DpnII	GATC	8 cut(s)	20, 62, 110, 308, 1623, 1770, 1910, 2194
EaeI	YGGCCR	1 cut(s)	885
Ecl136II	GAGCTC	2 cut(s)	819, 867
Eco24I	GRGCYC	3 cut(s)	767, 821, 869
Eco31I	GGTCTC	1 cut(s)	1457
Eco47I	GGWCC	2 cut(s)	2183, 2210
Eco53kI	GAGCTC	2 cut(s)	819, 867
Eco57I	CTGAAG	1 cut(s)	1446
Eco88I	CYCGRG	2 cut(s)	928, 1766
EcoICRI	GAGCTC	2 cut(s)	819, 867
EcoO109I	RGGNCCY	1 cut(s)	2183
EcoRI	GAATTC	1 cut(s)	2160
EcoRII	CCWGG	1 cut(s)	2037
EcoT38I	GRGCYC	3 cut(s)	767, 821, 869
EgeI	GGCGCC	2 cut(s)	630, 981
EheI	GGCGCC	2 cut(s)	630, 981
FaeI	CATG	2 cut(s)	1873, 2232
FaiI	YATR	7 cut(s)	392, 1871, 1892, 1894, 1956, 1973, 2230
FaqI	GGGAC	2 cut(s)	1573, 1739
FatI	CATG	2 cut(s)	1869, 2228
FauI	CCCGC	5 cut(s)	130, 244, 271, 805, 1411
FokI	GGATG	9 cut(s)	415, 448, 598, 793, 946, 1012, 1913, 1921, 2080
FriOI	GRGCYC	3 cut(s)	767, 821, 869
FspBI	CTAG	5 cut(s)	258, 1554, 1820, 1985, 2078
GlaI	GCGC	5 cut(s)	120, 441, 630, 981, 1020
GsaI	CCCAGC	2 cut(s)	588, 756
HaeII	RGCGCY	3 cut(s)	632, 983, 1022
HaeIII	GGCC	4 cut(s)	32, 887, 1374, 2141
HapII	CCGG	6 cut(s)	138, 363, 449, 498, 884, 1163
HgaI	GACGC	1 cut(s)	525
HhaI	GCGC	5 cut(s)	121, 442, 631, 982, 1021
Hin1I	GRCGYC	3 cut(s)	536, 629, 980
Hin1II	CATG	2 cut(s)	1873, 2232
Hin6I	GCGC	5 cut(s)	119, 440, 629, 980, 1019
HinP1I	GCGC	5 cut(s)	119, 440, 629, 980, 1019
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HindIII	AAGCTT	2 cut(s)	706, 2168
HinfI	GANTC	6 cut(s)	147, 303, 345, 1053, 1834, 2094
HpaII	CCGG	6 cut(s)	138, 363, 449, 498, 884, 1163
HphI	GGTGA	2 cut(s)	537, 2005
Hpy166II	GTNNAC	2 cut(s)	477, 1535
Hpy188III	TCNNGA	9 cut(s)	556, 928, 1138, 1676, 1768, 1919, 2157, 2198, 2229
Hpy8I	GTNNAC	2 cut(s)	477, 1535
Hpy99I	CGWCG	3 cut(s)	385, 541, 676
HpyAV	CCTTC	5 cut(s)	108, 345, 993, 1053, 1626
HpyCH4III	ACNGT	5 cut(s)	1135, 1591, 1639, 1748, 2026
Hsp92I	GRCGYC	3 cut(s)	536, 629, 980
Hsp92II	CATG	2 cut(s)	1873, 2232
HspAI	GCGC	5 cut(s)	119, 440, 629, 980, 1019
KasI	GGCGCC	2 cut(s)	628, 979
KpnI	GGTACC	1 cut(s)	1506
KspI	CCGCGG	3 cut(s)	30, 681, 1080
Kzo9I	GATC	8 cut(s)	20, 62, 110, 308, 1623, 1770, 1910, 2194
LguI	GCTCTTC	5 cut(s)	724, 772, 826, 874, 913
LweI	GCATC	6 cut(s)	335, 491, 788, 968, 1936, 1943
MaeI	CTAG	5 cut(s)	258, 1554, 1820, 1985, 2078
MaeIII	GTNAC	3 cut(s)	1135, 1216, 1993
MalI	GATC	8 cut(s)	22, 64, 112, 310, 1625, 1772, 1912, 2196
MbiI	CCGCTC	1 cut(s)	1813
MboI	GATC	8 cut(s)	20, 62, 110, 308, 1623, 1770, 1910, 2194
MflI	RGATCY	4 cut(s)	20, 62, 110, 308
MhlI	GDGCHC	6 cut(s)	767, 821, 869, 1247, 1404, 1537
MluCI	AATT	8 cut(s)	13, 1610, 1691, 1827, 2013, 2048, 2160, 2201
Mly113I	GGCGCC	2 cut(s)	629, 980
MlyI	GAGTC	4 cut(s)	141, 312, 1047, 1828
MmeI	TCCRAC	4 cut(s)	243, 286, 710, 1547
MseI	TTAA	5 cut(s)	1334, 1575, 1826, 2099, 2120
MspA1I	CMGCKG	6 cut(s)	29, 680, 827, 996, 1079, 1286
MspI	CCGG	6 cut(s)	138, 363, 449, 498, 884, 1163
MspR9I	CCNGG	3 cut(s)	139, 450, 2039
Mva1269I	GAATGC	2 cut(s)	800, 1669
MvaI	CCWGG	1 cut(s)	2039
MvnI	CGCG	4 cut(s)	29, 119, 680, 1079
NarI	GGCGCC	2 cut(s)	629, 980
NciI	CCSGG	2 cut(s)	139, 450
NdeII	GATC	8 cut(s)	20, 62, 110, 308, 1623, 1770, 1910, 2194
NlaIII	CATG	2 cut(s)	1873, 2232
NmeAIII	GCCGAG	4 cut(s)	129, 506, 575, 1010
NmuCI	GTSAC	2 cut(s)	1135, 1993
PaeR7I	CTCGAG	1 cut(s)	1766
PagI	TCATGA	1 cut(s)	2228
PaqCI	CACCTGC	2 cut(s)	1348, 1981
PciSI	GCTCTTC	5 cut(s)	724, 772, 826, 874, 913
PcsI	WCGNNNNNNNCGW	1 cut(s)	533
PctI	GAATGC	2 cut(s)	800, 1669
PfeI	GAWTC	2 cut(s)	345, 2094
PleI	GAGTC	4 cut(s)	141, 311, 1047, 1828
PluTI	GGCGCC	2 cut(s)	632, 983
PpsI	GAGTC	4 cut(s)	141, 311, 1047, 1828
PpuMI	RGGWCCY	1 cut(s)	2183
Psp124BI	GAGCTC	2 cut(s)	821, 869
Psp5II	RGGWCCY	1 cut(s)	2183
Psp6I	CCWGG	1 cut(s)	2037
PspFI	CCCAGC	2 cut(s)	584, 752
PspGI	CCWGG	1 cut(s)	2037
PspPI	GGNCC	2 cut(s)	2183, 2210
PspPPI	RGGWCCY	1 cut(s)	2183
PstI	CTGCAG	6 cut(s)	730, 778, 832, 880, 1519, 2194
PstNI	CAGNNNCTG	4 cut(s)	941, 1274, 1289, 1469
PsuI	RGATCY	4 cut(s)	20, 62, 110, 308
PvuII	CAGCTG	1 cut(s)	1286
RsaI	GTAC	7 cut(s)	247, 562, 1177, 1504, 1510, 1684, 2091
RsaNI	GTAC	7 cut(s)	246, 561, 1176, 1503, 1509, 1683, 2090
SacI	GAGCTC	2 cut(s)	821, 869
SacII	CCGCGG	3 cut(s)	30, 681, 1080
SapI	GCTCTTC	5 cut(s)	724, 772, 826, 874, 913
SaqAI	TTAA	5 cut(s)	1334, 1575, 1826, 2099, 2120
Sau3AI	GATC	8 cut(s)	20, 62, 110, 308, 1623, 1770, 1910, 2194
Sau96I	GGNCC	2 cut(s)	2183, 2210
ScaI	AGTACT	2 cut(s)	562, 1177
SchI	GAGTC	4 cut(s)	141, 312, 1047, 1828
ScrFI	CCNGG	3 cut(s)	139, 450, 2039
SduI	GDGCHC	6 cut(s)	767, 821, 869, 1247, 1404, 1537
SfaNI	GCATC	6 cut(s)	335, 491, 788, 968, 1936, 1943
SfcI	CTRYAG	7 cut(s)	726, 774, 828, 876, 1515, 1587, 2190
SfoI	GGCGCC	2 cut(s)	630, 981
Sfr274I	CTCGAG	1 cut(s)	1766
Sfr303I	CCGCGG	3 cut(s)	30, 681, 1080
SgrBI	CCGCGG	3 cut(s)	30, 681, 1080
SinI	GGWCC	2 cut(s)	2183, 2210
SlaI	CTCGAG	1 cut(s)	1766
SmlI	CTYRAG	1 cut(s)	1766
SmoI	CTYRAG	1 cut(s)	1766
SpeI	ACTAGT	1 cut(s)	1553
Sse9I	AATT	8 cut(s)	13, 1610, 1691, 1827, 2013, 2048, 2160, 2201
SspDI	GGCGCC	2 cut(s)	628, 979
SspMI	CTAG	5 cut(s)	258, 1554, 1820, 1985, 2078
SstI	GAGCTC	2 cut(s)	821, 869
StyD4I	CCNGG	3 cut(s)	137, 448, 2037
TaaI	ACNGT	5 cut(s)	1135, 1591, 1639, 1748, 2026
TaqI	TCGA	5 cut(s)	815, 863, 1767, 1773, 1851
TasI	AATT	8 cut(s)	13, 1610, 1691, 1827, 2013, 2048, 2160, 2201
TatI	WGTACW	2 cut(s)	560, 1175
TfiI	GAWTC	2 cut(s)	345, 2094
Tru1I	TTAA	5 cut(s)	1334, 1575, 1826, 2099, 2120
Tru9I	TTAA	5 cut(s)	1334, 1575, 1826, 2099, 2120
TscAI	CASTG	7 cut(s)	1255, 1260, 1275, 1396, 1404, 1486, 1633
TseFI	GTSAC	2 cut(s)	1135, 1993
Tsp45I	GTSAC	2 cut(s)	1135, 1993
TspDTI	ATGAA	8 cut(s)	327, 609, 975, 1104, 1284, 1368, 1941, 2148
TspGWI	ACGGA	2 cut(s)	369, 660
TspRI	CASTG	7 cut(s)	1255, 1260, 1275, 1396, 1404, 1486, 1633
VneI	GTGCAC	1 cut(s)	1533
VpaK11BI	GGWCC	2 cut(s)	2183, 2210
XapI	RAATTY	2 cut(s)	1691, 2160
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XhoI	CTCGAG	1 cut(s)	1766
XspI	CTAG	5 cut(s)	258, 1554, 1820, 1985, 2078
ZrmI	AGTACT	2 cut(s)	562, 1177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.