Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008368

Physical Location & Seq

Genomic Coordinates Forward (+)

33282944 .. 33283444

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0230800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGAGCCTATGAACGCTGGGGCAAGCAGAGCTAAGGAGGAGTTGAAGCACCTGAAGGTTTTGAGGATGGCAGTGATTTACATGATGATGTGTGTGCTGAATCTGTACGAGTACGAGAAAAAGAACTTGGGGCCTCTGAGATCGATTGTGTGGACTGTGGAGGTTGCTATGATCAATATTGTTGCTCCAATCTACTGGAGATTCAAAGGAGTGCCTGATGATTTCCTTGGTTTACTCTCACTCTTATCCCTTCTTACAAGCAAAAGAAGAAATACAAATTGTATGGAAGTAAGGAACCAGAAGTTTCTCGGATTCATTAGTTTCTTTGGGATGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042335 GO:0042545 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0045229 GO:0045595 GO:0045596 GO:0048364 GO:0048367 GO:0048437 GO:0048468 GO:0048469 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090627 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

112

Amino Acids

13.0

Weight (kDa)

9.59

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
REF	PF05755	11 - 77	2.9e-19	Rubber elongation factor protein (REF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61150 AT4G00730 AT4G00730
fragaria_vesca	FvH4_7g13350 FvH4_7g13350
malus_domestica	MD01G1050200.v1.1 MD07G1127600.v1.1
prunus_persica	Prupe.2G156900_v2.0.a1 Prupe.2G156900_v2.0.a1
pyrus_communis	pycom01g07490 pycom07g12270
rosa_chinensis	RchiOBHm_Chr1g0352671
rosa_laevigata	RLG00000028322
rosa_multiflora	Rmu_co8513183.1_g000001 Rmu_sc0005118.1_g000003
rosa_roxburghii	Rroxscaffold_4G00302500
rosa_rugosa	Rorug01G0230700 Rorug01G0230800 Rorug01G0230900
rosa_samantha	Rh1AG243900 Rh1BG214500 Rh1CG227900 Rh1DG240600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	2 cut(s)	107, 113
AgsI	TTSAA	2 cut(s)	46, 205
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
AoxI	GGCC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	131
BccI	CCATC	1 cut(s)	61
BclI	TGATCA	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	3 cut(s)	6, 132, 296
BpmI	CTGGAG	1 cut(s)	217
Bpu10I	CCTNAGC	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	200
BseCI	ATCGAT	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	2 cut(s)	72, 336
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	53
BseYI	CCCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	133
BshVI	ATCGAT	1 cut(s)	143
BsnI	GGCC	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	140, 171
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	129
BspDI	ATCGAT	1 cut(s)	143
BspLI	GGNNCC	3 cut(s)	6, 132, 296
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	2 cut(s)	140, 171
BssT1I	CCWWGG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	2 cut(s)	33, 137
BstF5I	GGATG	2 cut(s)	72, 336
BstKTI	GATC	2 cut(s)	143, 174
BstMBI	GATC	2 cut(s)	140, 171
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstXI	CCANNNNNNTGG	1 cut(s)	195
Bsu15I	ATCGAT	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	133
BsuTUI	ATCGAT	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	72, 336
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	131
ClaI	ATCGAT	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	106, 112
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	3 cut(s)	7, 32, 133
CviKI_1	RGCY	3 cut(s)	7, 32, 133
CviQI	GTAC	2 cut(s)	106, 112
DdeI	CTNAG	2 cut(s)	33, 137
DpnI	GATC	2 cut(s)	142, 173
DpnII	GATC	2 cut(s)	140, 171
Eco130I	CCWWGG	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	1 cut(s)	85
FaiI	YATR	4 cut(s)	11, 83, 170, 284
FatI	CATG	1 cut(s)	81
FbaI	TGATCA	1 cut(s)	171
FokI	GGATG	1 cut(s)	79
GsaI	CCCAGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	133
Hin1II	CATG	1 cut(s)	85
HinfI	GANTC	3 cut(s)	100, 201, 312
Hpy166II	GTNNAC	2 cut(s)	153, 233
Hpy188I	TCNGA	2 cut(s)	138, 311
Hpy8I	GTNNAC	2 cut(s)	153, 233
HpyAV	CCTTC	2 cut(s)	49, 260
HpyCH4III	ACNGT	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	2 cut(s)	33, 137
Hsp92II	CATG	1 cut(s)	85
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	140, 171
LmnI	GCTCC	2 cut(s)	4, 190
LpnPI	CCDG	5 cut(s)	3, 65, 181, 228, 311
MalI	GATC	2 cut(s)	142, 173
MboI	GATC	2 cut(s)	140, 171
MboII	GAAGA	1 cut(s)	279
MluCI	AATT	2 cut(s)	277, 334
MnlI	CCTC	4 cut(s)	31, 57, 144, 154
MseI	TTAA	1 cut(s)	337
MslI	CAYNNNNRTG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	2 cut(s)	140, 171
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	3 cut(s)	6, 132, 296
PfeI	GAWTC	3 cut(s)	100, 201, 312
PspFI	CCCAGC	1 cut(s)	17
PspN4I	GGNNCC	3 cut(s)	6, 132, 296
PspPI	GGNCC	1 cut(s)	131
RsaI	GTAC	2 cut(s)	107, 113
RsaNI	GTAC	2 cut(s)	106, 112
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	337
Sau3AI	GATC	2 cut(s)	140, 171
Sau96I	GGNCC	1 cut(s)	131
SetI	ASST	4 cut(s)	34, 54, 60, 165
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	277, 334
SspI	AATATT	1 cut(s)	178
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	143
TasI	AATT	2 cut(s)	277, 334
TfiI	GAWTC	3 cut(s)	100, 201, 312
Tru1I	TTAA	1 cut(s)	337
Tru9I	TTAA	1 cut(s)	337
TscAI	CASTG	1 cut(s)	78
TspDTI	ATGAA	2 cut(s)	26, 304
TspRI	CASTG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.