Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008368

Physical Location & Seq

Genomic Coordinates Forward (+)

46105601 .. 46111832

Gene Structure 6232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57835

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2493 bp

ATGAGTTTTGGGGGTTTTCTTGACAATAGTACCGGCAGTAGTGGCGGTGCAAGAATCGTCTCTGATATTCCTTACAACAACAACCACCACCACCACCACCACAACGCCAACCACACCAGTATGCCCTCTAGTGCAATCGCTCAGCCTCGACTCGTGACTCAGTCTCTCACCAAATCAATGTTCAACAACTCACCAGGCCTCTCACTCGCTCTTCAGACTAATGCCGACGGAGGCGGAGACGCGCCGAGAATGGCTGAGAATTTCGAGGCGAATAATAACGTCGGCGGGCGGAGGAGCCGGGAGGAGGAGAACGAGATCAGTAGATCTGGCAGCGATAACATGGACGGCGCCGGCTCCGGCGACGAAGGAGACGCCGCGGATAACAGCAACCCTCGTAAGAAGAAGAGATACCACCGACACACCCCGCAGCAAATCCAAGAGCTCGAAGCGTTATTCAAGGAGTGCCCTCATCCTGATGAGAAGCAAAGGTTGGAGCTTAGCAGAAGGCTAAATCTTGAGACCCGGCAAGTCAAGTTCTGGTTCCAAAATCGCCGAACCCAGATGAAGACTCAACTTGAACGGCATGAGAACTCTTTGCTGAGGCAAGAGAACGATAAGCTTCGAGCCGAAAACATGTCCATCAGGGATGCCATGAGGAACCCAATTTGCACAAACTGCGGCGGTCCGGCCATGATAGGCGATATTTCTATTGAAGAGCAACATCTCAGGATTGACAATGCCCGATTAAAGGACGAGTTAGACCGGGTTTGTGCACTTGCCGGCAAGTTCTTGGGCCGCCCAATTTCGTCTCTAGGTCCATCAATGGGGCCTCCACTGCCGAGTTCAGCTCTAGAACTCGGAGTTGGGAACAATGGGTTCGGTGGGATGAGCTCAGTTGCTACAACAATGCCATTGGGACCTGATTTCGGAGCGGGGCTTGGGGGTGGCATGCCGATTGTGGCTCACACTAGGCCGGTGGCGGGAGGGCTCGACGAGAGGACTATGTTTTTGGAGCTAGCTTTGGCCGCCATGGATGAGCTTGTGAAGCTGGCTCAGACTGATGAGCTTTGGCTGAGGAGCTTGGAAGGTGGGAGAGAGGTGCTGAATCACGAGGAGTACATGAGGAGTTTCACGCCTTGCATTGGGTTGAAGCCTAATGGCTTTGTTACCGAGGCTTCTAGGGAGACTGGTATGGTCATCATCAACAGTTTGGCTCTGGTTGAGACTCTGATGGACTCGAATCGATGGCTGGAGATGTTTCCTTGTATGATTGCCAGAACTTCTACCACTGATGTGATTTCCAGCGGTATGGGAGGGACTAGAAATGGTGCACTTCAACTGATGCATGCTGAGCTTCAAGTCCTATCGCCTTTGGTTCCAGTCCGTGAGGTCAACTTCCTCCGCTTCTGCAAGCAGCACGCCGAGGGTGTGTGGGCGGTGGTGGATGTGTCCGTCGACACAATCAGAGACAATTCTGGTGCACCCACATTTGTGAACTGCAGGAGGCTCCCTTCTGGCTGTGTTGTACAAGATATGCCTAATGGTTACTCCAAGGTTACATGGGTTGAGCATGCAGAGTACGACGAGAGCCAAGTCCACCACCTGTACCGACCCTTGTTGAGTTCCGGCATGGGGTTCGGTGCGCAGAGGTGGGTCGCCACCCTCCAGCGCCAATGCCAGTGCCTTGCTATCCTCATGTCCTCCACGGTCCCGGCCCGTGACCACGCCAATACCATCACTCAGAGCGGGAGGAAGAGCATGTTGAAGCTGGCGCAGCGAATGACTGACAACTTCTGCGCCGGGGTCTGCGCCTCGACGGTCCACAAATGGAACAAGCTGCACGCCGGCAATGTGGACGAGGACGTCCGCTACATGACCAGAGAGAGCATGGACGACCCCGGCGAGCCGCCGGGCATTGTGCTCAGCGCTGCCACTTCGGTCTGGCTCCCAGTCTCCCCACAAAGGCTCTTCAATTTCTTGCGCGACGAGCGACTCAGGAGCGAGTGGGACATCCTCTCCAACGGTGGGCCCATGCAGGAGATGGCCCACATCGCTAAGGGCCAGGACCAAGGCAACTGCGTCTCCCTCCTCCGCGCCAGAGCCATGAACGCAAACCAAAACAGCATGCTGATATTACAAGAGACGTGCATCGACGCGGCCGGGTCGCTTGTGGTGTACGCGCCGGTGGATATTCCGGCCATGCACGTGGTGATGAACGGAGGGGACTCGGCCTACGTGGCGCTGCTGCCTTCGGGGTTCGCGATAGTCCCGGACGGGCCGGGCTCGCGTGGTTCGGAGGCCAAGGCCGGCCAGGGCAGCAGCAACGGCGGCGGTGAGGCCAGGGTGAGTGGGTCACTGTTAACGATGACGTTTCAGATATTGGTCAACAGTCTGCCGTCGGCGAAGTTGACCGTGGAGTCGGTGGAGACTGTCAACAATCTCATCTCCTGCACCGTTCAGAAGATCAAGGCCGCGCTCCAGTGCGAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042335 GO:0042545 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0045229 GO:0045595 GO:0045596 GO:0048364 GO:0048367 GO:0048437 GO:0048468 GO:0048469 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090627 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

830

Amino Acids

90.37

Weight (kDa)

6.08

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	134 - 189	1.7e-19	Homeodomain
START	PF01852	339 - 561	1.6e-51	START domain
PDF2_C	PF25797	581 - 828	1.3e-104	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61150 AT4G00730 AT4G00730
fragaria_vesca	FvH4_7g13350 FvH4_7g13350
malus_domestica	MD01G1050200.v1.1 MD07G1127600.v1.1
prunus_persica	Prupe.2G156900_v2.0.a1 Prupe.2G156900_v2.0.a1
pyrus_communis	pycom01g07490 pycom07g12270
rosa_chinensis	RchiOBHm_Chr1g0352671
rosa_laevigata	RLG00000028322
rosa_multiflora	Rmu_co8513183.1_g000001 Rmu_sc0005118.1_g000003
rosa_roxburghii	Rroxscaffold_4G00302500
rosa_rugosa	Rorug01G0230700 Rorug01G0230800 Rorug01G0230900
rosa_samantha	Rh1AG243900 Rh1BG214500 Rh1CG227900 Rh1DG240600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1862, 2416
AatII	GACGTC	1 cut(s)	1866
Acc16I	TGCGCA	1 cut(s)	1644
AccB1I	GGYRCC	1 cut(s)	347
AccBSI	CCGCTC	2 cut(s)	932, 1746
AccI	GTMKAC	1 cut(s)	1455
AccII	CGCG	9 cut(s)	242, 377, 1983, 2094, 2156, 2180, 2261, 2287, 2474
AcoI	YGGCCR	5 cut(s)	687, 1023, 2157, 2196, 2308
AcsI	RAATTY	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	197
AcvI	CACGTG	1 cut(s)	2206
AcyI	GRCGYC	3 cut(s)	348, 372, 1863
AdeI	CACNNNGTG	1 cut(s)	2209
AfaI	GTAC	6 cut(s)	31, 1118, 1527, 1580, 1607, 2177
AfeI	AGCGCT	1 cut(s)	1927
AfiI	CCNNNNNNNGG	9 cut(s)	304, 748, 824, 926, 980, 1142, 1632, 1962, 2025
AflIII	ACRYGT	1 cut(s)	633
AgsI	TTSAA	9 cut(s)	184, 457, 578, 713, 1150, 1337, 1358, 1765, 1972
AjiI	CACGTC	1 cut(s)	2145
AjnI	CCWGG	4 cut(s)	193, 2061, 2310, 2339
AjuI	GAANNNNNNNTTGG	6 cut(s)	164, 196, 473, 505, 846, 878
AleI	CACNNNNGTG	2 cut(s)	1292, 1490
Alw21I	GWGCWC	6 cut(s)	444, 775, 893, 1333, 1483, 1923
Alw44I	GTGCAC	3 cut(s)	771, 1329, 1479
Aor51HI	AGCGCT	1 cut(s)	1927
ApaI	GGGCCC	1 cut(s)	2031
ApaLI	GTGCAC	3 cut(s)	771, 1329, 1479
ApoI	RAATTY	1 cut(s)	259
ArsI	GACNNNNNNTTYG	2 cut(s)	991, 1023
AsuHPI	GGTGA	5 cut(s)	160, 183, 2221, 2345, 2356
AsuNHI	GCTAGC	1 cut(s)	1015
AvaII	GGWCC	6 cut(s)	683, 815, 917, 1708, 1819, 2065
BaeGI	GKGCMC	5 cut(s)	467, 775, 1333, 1483, 2031
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	5 cut(s)	444, 893, 990, 2031, 2285
BarI	GAAGNNNNNNTAC	2 cut(s)	392, 424
BauI	CACGAG	2 cut(s)	152, 1109
BbrPI	CACGTG	1 cut(s)	2206
BbsI	GAAGAC	1 cut(s)	572
Bbv12I	GWGCWC	6 cut(s)	444, 775, 893, 1333, 1483, 1923
BbvCI	CCTCAGC	2 cut(s)	599, 1073
BccI	CCATC	6 cut(s)	647, 826, 1225, 1239, 1742, 2035
BceAI	ACGGC	4 cut(s)	361, 596, 2341, 2380
BcgI	CGANNNNNNTGC	2 cut(s)	1618, 1652
BciT130I	CCWGG	4 cut(s)	195, 2063, 2312, 2341
BfaI	CTAG	7 cut(s)	129, 812, 851, 969, 1016, 1179, 1320
BfmI	CTRYAG	1 cut(s)	1498
BfoI	RGCGCY	4 cut(s)	351, 1672, 1929, 2243
BglI	GCCNNNNNGGC	1 cut(s)	2237
BglII	AGATCT	1 cut(s)	323
BlpI	GCTNAGC	4 cut(s)	141, 497, 1350, 1922
Bme18I	GGWCC	6 cut(s)	683, 815, 917, 1708, 1819, 2065
BmgBI	CACGTC	1 cut(s)	2145
BmrI	ACTGGG	1 cut(s)	1943
BmsI	GCATC	3 cut(s)	637, 1332, 2157
BmtI	GCTAGC	1 cut(s)	1019
BmuI	ACTGGG	1 cut(s)	1943
BpiI	GAAGAC	1 cut(s)	572
BplI	GAGNNNNNCTC	2 cut(s)	832, 864
BpmI	CTGGAG	3 cut(s)	1271, 1649, 2462
Bpu10I	CCTNAGC	3 cut(s)	599, 1073, 2055
Bpu1102I	GCTNAGC	4 cut(s)	141, 497, 1350, 1922
BpuEI	CTTGAG	1 cut(s)	536
Bsa29I	ATCGAT	1 cut(s)	1243
BsaAI	YACGTR	2 cut(s)	2206, 2236
BsaHI	GRCGYC	3 cut(s)	348, 372, 1863
BsaI	GGTCTC	1 cut(s)	512
BsaXI	ACNNNNNCTCC	4 cut(s)	2000, 2030, 2066, 2096
Bsc4I	CCNNNNNNNGG	9 cut(s)	304, 748, 824, 926, 980, 1142, 1632, 1962, 2025
Bse118I	RCCGGY	7 cut(s)	32, 350, 779, 973, 1844, 2182, 2306
Bse1I	ACTGG	6 cut(s)	117, 1192, 1379, 1678, 1949, 2479
Bse3DI	GCAATG	1 cut(s)	1855
BseBI	CCWGG	4 cut(s)	195, 2063, 2312, 2341
BseCI	ATCGAT	1 cut(s)	1243
BseGI	GGATG	6 cut(s)	469, 652, 891, 1039, 1450, 2010
BseLI	CCNNNNNNNGG	9 cut(s)	304, 748, 824, 926, 980, 1142, 1632, 1962, 2025
BseMI	GCAATG	1 cut(s)	1855
BseNI	ACTGG	6 cut(s)	117, 1192, 1379, 1678, 1949, 2479
BseRI	GAGGAG	7 cut(s)	307, 317, 320, 1090, 1127, 1138, 2078
BseSI	GKGCMC	5 cut(s)	467, 775, 1333, 1483, 2031
BseX3I	CGGCCG	1 cut(s)	2157
BsgI	GTGCAG	2 cut(s)	1823, 2434
Bsh1236I	CGCG	9 cut(s)	242, 377, 1983, 2094, 2156, 2180, 2261, 2287, 2474
Bsh1285I	CGRYCG	1 cut(s)	2160
BshNI	GGYRCC	1 cut(s)	347
BshVI	ATCGAT	1 cut(s)	1243
BsiEI	CGRYCG	1 cut(s)	2160
BsiHKAI	GWGCWC	6 cut(s)	444, 775, 893, 1333, 1483, 1923
BslFI	GGGAC	6 cut(s)	930, 1330, 1694, 2021, 2237, 2252
BslI	CCNNNNNNNGG	9 cut(s)	304, 748, 824, 926, 980, 1142, 1632, 1962, 2025
BsmBI	CGTCTC	6 cut(s)	64, 231, 363, 813, 2086, 2135
BsmFI	GGGAC	6 cut(s)	930, 1330, 1694, 2021, 2237, 2252
Bso31I	GGTCTC	1 cut(s)	512
Bsp120I	GGGCCC	1 cut(s)	2027
Bsp1407I	TGTACA	1 cut(s)	1525
Bsp143I	GATC	3 cut(s)	315, 323, 2463
Bsp1720I	GCTNAGC	4 cut(s)	141, 497, 1350, 1922
Bsp19I	CCATGG	1 cut(s)	1029
Bsp68I	TCGCGA	1 cut(s)	2261
BspDI	ATCGAT	1 cut(s)	1243
BspFNI	CGCG	9 cut(s)	242, 377, 1983, 2094, 2156, 2180, 2261, 2287, 2474
BspMAI	CTGCAG	1 cut(s)	1502
BspOI	GCTAGC	1 cut(s)	1019
BspQI	GCTCTTC	4 cut(s)	216, 708, 1748, 1973
BspT107I	GGYRCC	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	512
BsrBI	CCGCTC	2 cut(s)	932, 1746
BsrDI	GCAATG	1 cut(s)	1855
BsrFI	RCCGGY	7 cut(s)	32, 350, 779, 973, 1844, 2182, 2306
BsrGI	TGTACA	1 cut(s)	1525
BsrI	ACTGG	6 cut(s)	117, 1192, 1379, 1678, 1949, 2479
BssAI	RCCGGY	7 cut(s)	32, 350, 779, 973, 1844, 2182, 2306
BssMI	GATC	3 cut(s)	315, 323, 2463
BssNI	GRCGYC	3 cut(s)	348, 372, 1863
BssSI	CACGAG	2 cut(s)	152, 1109
BssT1I	CCWWGG	4 cut(s)	1029, 1551, 2068, 2301
Bst2BI	CACGAG	2 cut(s)	152, 1109
Bst2UI	CCWGG	4 cut(s)	195, 2063, 2312, 2341
Bst4CI	ACNGT	9 cut(s)	1208, 1708, 1819, 2024, 2358, 2390, 2413, 2431, 2455
Bst6I	CTCTTC	5 cut(s)	216, 398, 708, 1748, 1973
BstACI	GRCGYC	3 cut(s)	348, 372, 1863
BstAPI	GCANNNNNTGC	1 cut(s)	675
BstAUI	TGTACA	1 cut(s)	1525
BstBAI	YACGTR	2 cut(s)	2206, 2236
BstDSI	CCRYGG	4 cut(s)	375, 1029, 1704, 2412
BstF5I	GGATG	6 cut(s)	469, 652, 891, 1039, 1450, 2010
BstFNI	CGCG	9 cut(s)	242, 377, 1983, 2094, 2156, 2180, 2261, 2287, 2474
BstH2I	RGCGCY	4 cut(s)	351, 1672, 1929, 2243
BstKTI	GATC	3 cut(s)	318, 326, 2466
BstMBI	GATC	3 cut(s)	315, 323, 2463
BstMCI	CGRYCG	1 cut(s)	2160
BstNI	CCWGG	4 cut(s)	195, 2063, 2312, 2341
BstNSI	RCATGY	6 cut(s)	637, 952, 1349, 1574, 1762, 2128
BstSFI	CTRYAG	1 cut(s)	1498
BstSLI	GKGCMC	5 cut(s)	467, 775, 1333, 1483, 2031
BstUI	CGCG	9 cut(s)	242, 377, 1983, 2094, 2156, 2180, 2261, 2287, 2474
BstV2I	GAAGAC	1 cut(s)	572
BstX2I	RGATCY	1 cut(s)	323
BstXI	CCANNNNNNTGG	2 cut(s)	1309, 2206
BstYI	RGATCY	1 cut(s)	323
BstZI	CGGCCG	1 cut(s)	2157
Bsu15I	ATCGAT	1 cut(s)	1243
BsuTUI	ATCGAT	1 cut(s)	1243
BtgI	CCRYGG	4 cut(s)	375, 1029, 1704, 2412
BtgZI	GCGATG	1 cut(s)	2035
BtrI	CACGTC	1 cut(s)	2145
BtsCI	GGATG	6 cut(s)	469, 652, 891, 1039, 1450, 2010
BtsI	GCAGTG	1 cut(s)	833
BtsIMutI	CAGTG	5 cut(s)	833, 1287, 1685, 2354, 2486
BtuMI	TCGCGA	1 cut(s)	2261
Cfr10I	RCCGGY	7 cut(s)	32, 350, 779, 973, 1844, 2182, 2306
Cfr42I	CCGCGG	1 cut(s)	378
ClaI	ATCGAT	1 cut(s)	1243
CpoI	CGGWCCG	1 cut(s)	683
CseI	GACGC	4 cut(s)	248, 380, 2068, 2162
Csp6I	GTAC	6 cut(s)	30, 1117, 1526, 1579, 1606, 2176
CspI	CGGWCCG	1 cut(s)	683
CviQI	GTAC	6 cut(s)	30, 1117, 1526, 1579, 1606, 2176
DinI	GGCGCC	1 cut(s)	349
DpnI	GATC	3 cut(s)	317, 325, 2465
DpnII	GATC	3 cut(s)	315, 323, 2463
DraIII	CACNNNGTG	1 cut(s)	2209
DrdI	GACNNNNNNGTC	2 cut(s)	1862, 2416
DseDI	GACNNNNNNGTC	2 cut(s)	1862, 2416
EaeI	YGGCCR	5 cut(s)	687, 1023, 2157, 2196, 2308
EagI	CGGCCG	1 cut(s)	2157
Eam1104I	CTCTTC	5 cut(s)	216, 398, 708, 1748, 1973
EarI	CTCTTC	5 cut(s)	216, 398, 708, 1748, 1973
EciI	GGCGGA	2 cut(s)	249, 304
Ecl136II	GAGCTC	2 cut(s)	442, 891
EclXI	CGGCCG	1 cut(s)	2157
Eco130I	CCWWGG	4 cut(s)	1029, 1551, 2068, 2301
Eco147I	AGGCCT	1 cut(s)	198
Eco24I	GRGCYC	5 cut(s)	444, 893, 990, 2031, 2285
Eco31I	GGTCTC	1 cut(s)	512
Eco47I	GGWCC	6 cut(s)	683, 815, 917, 1708, 1819, 2065
Eco47III	AGCGCT	1 cut(s)	1927
Eco52I	CGGCCG	1 cut(s)	2157
Eco53kI	GAGCTC	2 cut(s)	442, 891
Eco57I	CTGAAG	1 cut(s)	197
Eco72I	CACGTG	1 cut(s)	2206
EcoICRI	GAGCTC	2 cut(s)	442, 891
EcoO109I	RGGNCCY	2 cut(s)	827, 917
EcoRII	CCWGG	4 cut(s)	193, 2061, 2310, 2339
EcoT14I	CCWWGG	4 cut(s)	1029, 1551, 2068, 2301
EcoT22I	ATGCAT	1 cut(s)	1347
EcoT38I	GRGCYC	5 cut(s)	444, 893, 990, 2031, 2285
EgeI	GGCGCC	1 cut(s)	349
EheI	GGCGCC	1 cut(s)	349
ErhI	CCWWGG	4 cut(s)	1029, 1551, 2068, 2301
Esp3I	CGTCTC	6 cut(s)	64, 231, 363, 813, 2086, 2135
FaqI	GGGAC	6 cut(s)	930, 1330, 1694, 2021, 2237, 2252
FauI	CCCGC	5 cut(s)	278, 432, 925, 973, 1739
FblI	GTMKAC	1 cut(s)	1455
FokI	GGATG	6 cut(s)	456, 659, 898, 1046, 1457, 1997
FriOI	GRGCYC	5 cut(s)	444, 893, 990, 2031, 2285
FseI	GGCCGGCC	1 cut(s)	2310
FspBI	CTAG	7 cut(s)	129, 812, 851, 969, 1016, 1179, 1320
FspI	TGCGCA	1 cut(s)	1644
GsuI	CTGGAG	3 cut(s)	1271, 1649, 2462
HaeII	RGCGCY	4 cut(s)	351, 1672, 1929, 2243
HgaI	GACGC	4 cut(s)	248, 380, 2068, 2162
Hin1I	GRCGYC	3 cut(s)	348, 372, 1863
HincII	GTYRAC	6 cut(s)	1393, 1456, 2361, 2386, 2409, 2434
HindII	GTYRAC	6 cut(s)	1393, 1456, 2361, 2386, 2409, 2434
HindIII	AAGCTT	1 cut(s)	617
HpaI	GTTAAC	1 cut(s)	2361
HphI	GGTGA	5 cut(s)	160, 183, 2221, 2345, 2356
Hpy188III	TCNNGA	9 cut(s)	20, 154, 473, 515, 727, 851, 1109, 1996, 2260
HpyAV	CCTTC	5 cut(s)	359, 498, 1079, 1521, 2259
HpyCH4III	ACNGT	9 cut(s)	1208, 1708, 1819, 2024, 2358, 2390, 2413, 2431, 2455
HpyCH4IV	ACGT	6 cut(s)	279, 1863, 2144, 2205, 2235, 2369
HpySE526I	ACGT	6 cut(s)	279, 1863, 2144, 2205, 2235, 2369
Hsp92I	GRCGYC	3 cut(s)	348, 372, 1863
KasI	GGCGCC	1 cut(s)	347
KroI	GCCGGC	4 cut(s)	350, 779, 1844, 2306
KroNI	GCCGGC	4 cut(s)	352, 781, 1846, 2308
KspAI	GTTAAC	1 cut(s)	2361
KspI	CCGCGG	1 cut(s)	378
Kzo9I	GATC	3 cut(s)	315, 323, 2463
LguI	GCTCTTC	4 cut(s)	216, 708, 1748, 1973
LweI	GCATC	3 cut(s)	637, 1332, 2157
MaeI	CTAG	7 cut(s)	129, 812, 851, 969, 1016, 1179, 1320
MaeII	ACGT	6 cut(s)	279, 1863, 2144, 2205, 2235, 2369
MaeIII	GTNAC	6 cut(s)	154, 1165, 1544, 1555, 1718, 2352
MalI	GATC	3 cut(s)	317, 325, 2465
MbiI	CCGCTC	2 cut(s)	932, 1746
MboI	GATC	3 cut(s)	315, 323, 2463
MboII	GAAGA	8 cut(s)	203, 412, 415, 577, 725, 1765, 1960, 2473
MflI	RGATCY	1 cut(s)	323
MluCI	AATT	5 cut(s)	259, 663, 801, 1471, 1972
Mly113I	GGCGCC	1 cut(s)	348
MlyI	GAGTC	8 cut(s)	144, 151, 562, 1219, 1229, 1986, 2219, 2426
MmeI	TCCRAC	2 cut(s)	471, 2043
Mph1103I	ATGCAT	1 cut(s)	1347
MroNI	GCCGGC	4 cut(s)	350, 779, 1844, 2306
MseI	TTAA	2 cut(s)	746, 2360
MslI	CAYNNNNRTG	5 cut(s)	119, 474, 1292, 1490, 2204
MspA1I	CMGCKG	2 cut(s)	377, 1305
MvaI	CCWGG	4 cut(s)	195, 2063, 2312, 2341
MvnI	CGCG	9 cut(s)	242, 377, 1983, 2094, 2156, 2180, 2261, 2287, 2474
NaeI	GCCGGC	4 cut(s)	352, 781, 1846, 2308
NarI	GGCGCC	1 cut(s)	348
NcoI	CCATGG	1 cut(s)	1029
NdeII	GATC	3 cut(s)	315, 323, 2463
NgoMIV	GCCGGC	4 cut(s)	350, 779, 1844, 2306
NheI	GCTAGC	1 cut(s)	1015
NmeAIII	GCCGAG	4 cut(s)	270, 864, 1447, 2207
NmuCI	GTSAC	3 cut(s)	154, 1718, 2352
NruI	TCGCGA	1 cut(s)	2261
NsbI	TGCGCA	1 cut(s)	1644
NsiI	ATGCAT	1 cut(s)	1347
NspI	RCATGY	6 cut(s)	637, 952, 1349, 1574, 1762, 2128
OliI	CACNNNNGTG	2 cut(s)	1292, 1490
PaeI	GCATGC	4 cut(s)	952, 1349, 1574, 2128
PceI	AGGCCT	1 cut(s)	198
PciI	ACATGT	1 cut(s)	633
PciSI	GCTCTTC	4 cut(s)	216, 708, 1748, 1973
PcsI	WCGNNNNNNNCGW	2 cut(s)	1899, 2258
PdiI	GCCGGC	4 cut(s)	352, 781, 1846, 2308
PfeI	GAWTC	3 cut(s)	54, 1105, 1240
PflFI	GACNNNGTC	1 cut(s)	160
PfoI	TCCNGGA	1 cut(s)	2268
PleI	GAGTC	8 cut(s)	144, 151, 562, 1219, 1229, 1986, 2219, 2425
PluTI	GGCGCC	1 cut(s)	351
PmaCI	CACGTG	1 cut(s)	2206
PmlI	CACGTG	1 cut(s)	2206
PpsI	GAGTC	8 cut(s)	144, 151, 562, 1219, 1229, 1986, 2219, 2425
Ppu21I	YACGTR	2 cut(s)	2206, 2236
PpuMI	RGGWCCY	1 cut(s)	917
PscI	ACATGT	1 cut(s)	633
Psp124BI	GAGCTC	2 cut(s)	444, 893
Psp5II	RGGWCCY	1 cut(s)	917
Psp6I	CCWGG	4 cut(s)	193, 2061, 2310, 2339
PspCI	CACGTG	1 cut(s)	2206
PspGI	CCWGG	4 cut(s)	193, 2061, 2310, 2339
PspOMI	GGGCCC	1 cut(s)	2027
PspPPI	RGGWCCY	1 cut(s)	917
PstI	CTGCAG	1 cut(s)	1502
PsuI	RGATCY	1 cut(s)	323
PsyI	GACNNNGTC	1 cut(s)	160
RigI	GGCCGGCC	1 cut(s)	2310
RruI	TCGCGA	1 cut(s)	2261
RsaI	GTAC	6 cut(s)	31, 1118, 1527, 1580, 1607, 2177
RsaNI	GTAC	6 cut(s)	30, 1117, 1526, 1579, 1606, 2176
RseI	CAYNNNNRTG	5 cut(s)	119, 474, 1292, 1490, 2204
Rsr2I	CGGWCCG	1 cut(s)	683
RsrII	CGGWCCG	1 cut(s)	683
SacI	GAGCTC	2 cut(s)	444, 893
SacII	CCGCGG	1 cut(s)	378
SalI	GTCGAC	1 cut(s)	1454
SapI	GCTCTTC	4 cut(s)	216, 708, 1748, 1973
SaqAI	TTAA	2 cut(s)	746, 2360
Sau3AI	GATC	3 cut(s)	315, 323, 2463
SchI	GAGTC	8 cut(s)	144, 151, 562, 1219, 1229, 1986, 2219, 2426
SfaNI	GCATC	3 cut(s)	637, 1332, 2157
SfcI	CTRYAG	1 cut(s)	1498
SfoI	GGCGCC	1 cut(s)	349
Sfr303I	CCGCGG	1 cut(s)	378
SgrAI	CRCCGGYG	1 cut(s)	2182
SgrBI	CCGCGG	1 cut(s)	378
SinI	GGWCC	6 cut(s)	683, 815, 917, 1708, 1819, 2065
SmiMI	CAYNNNNRTG	5 cut(s)	119, 474, 1292, 1490, 2204
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
SphI	GCATGC	4 cut(s)	952, 1349, 1574, 2128
Sse9I	AATT	5 cut(s)	259, 663, 801, 1471, 1972
SseBI	AGGCCT	1 cut(s)	198
SspDI	GGCGCC	1 cut(s)	347
SspMI	CTAG	7 cut(s)	129, 812, 851, 969, 1016, 1179, 1320
SstI	GAGCTC	2 cut(s)	444, 893
StuI	AGGCCT	1 cut(s)	198
StyI	CCWWGG	4 cut(s)	1029, 1551, 2068, 2301
TaaI	ACNGT	9 cut(s)	1208, 1708, 1819, 2024, 2358, 2390, 2413, 2431, 2455
TaiI	ACGT	6 cut(s)	282, 1866, 2147, 2208, 2238, 2372
TaqII	GACCGA	1 cut(s)	1927
TasI	AATT	5 cut(s)	259, 663, 801, 1471, 1972
TatI	WGTACW	2 cut(s)	1116, 1525
TauI	GCSGC	8 cut(s)	377, 681, 798, 1028, 1909, 2159, 2331, 2474
TfiI	GAWTC	3 cut(s)	54, 1105, 1240
Tru1I	TTAA	2 cut(s)	746, 2360
Tru9I	TTAA	2 cut(s)	746, 2360
TscAI	CASTG	5 cut(s)	840, 1294, 1685, 2361, 2486
TseFI	GTSAC	3 cut(s)	154, 1718, 2352
Tsp45I	GTSAC	3 cut(s)	154, 1718, 2352
TspDTI	ATGAA	3 cut(s)	578, 2120, 2228
TspGWI	ACGGA	4 cut(s)	243, 1373, 1441, 2232
TspRI	CASTG	5 cut(s)	840, 1294, 1685, 2361, 2486
Tth111I	GACNNNGTC	1 cut(s)	160
VneI	GTGCAC	3 cut(s)	771, 1329, 1479
VpaK11BI	GGWCC	6 cut(s)	683, 815, 917, 1708, 1819, 2065
XapI	RAATTY	1 cut(s)	259
XbaI	TCTAGA	1 cut(s)	850
XceI	RCATGY	6 cut(s)	637, 952, 1349, 1574, 1762, 2128
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1885, 2038
XmiI	GTMKAC	1 cut(s)	1455
XspI	CTAG	7 cut(s)	129, 812, 851, 969, 1016, 1179, 1320
ZraI	GACGTC	1 cut(s)	1864
Zsp2I	ATGCAT	1 cut(s)	1347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.