FvH4_7g15040

Belongs to the glycosyl hydrolase 28 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
13117198 .. 13120351
3154 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15040.t1

Sequence Viewer

Length: 1464 bp
ATGGGACTGTTAAGAAGAAATCCCATTGAAACTCAAGTGATGAAATCGGTGTTCATAGTTGTTGTCGTGGCCTTGATACTAAGAGGTGGAGAGAGTAGAGGAGTAACCAAGGCCAAGCCTAAGGCCCCTAAAAAATTTGAGTCTTTTGAGTACTCAGCTATGAATTGCAGAGCTCACAGTGCCTCACTGACTGAGTTTGGAGGAGTTGGAGATGGAAAGACATCAAATACAAAGGCTTTTCAGACTGCAATTAGTAAGCTGAGCCAGTATGCAACAGATGGAGGTGCTCAGCTTTTTGTTCCAGCTGGGAAATGGCTGACAGGAAGTTTCAGCCTCACCAGCCATTTCACTCTTTATCTTCACAAGGATGCTGTTCTTCTTGCTTCTCAGGACTTGAATGAGTGGCCTGTGCTGAAAGCCCTTCCATCTTATGGTAGAGGAAGAGATGCAGCAGCCGGAAGGTACTCCAGTCTCATATTTGGAACAAATCTCACTGATGTCATTGTTACAGGAGAAAATGGCACAATTGATGGTCAAGGTGAATTTTGGTGGCAACAGTTCCACAAGAAGAAGCTAAAGTATACCCGCCCTTACCTGATTGAGATCATGTTCTCCAGTGATATTCAGATCTCAAATCTCACCCTTCTAAATTCTCCTTCATGGAATGTTCATCCTGTCTATAGCAGTAACATTCTTGTGCAAGGGATTACTATCATTGCTCCAATTTCATCTCCAAATACTGATGGGATCAATCCAGATTCTTGCACAAATACTAAAATTGAAGACTGTTACATAGTCTCTGGGGATGACTGTGTAGCTGTTAAGAGTGGCTGGGATGAGTATGGCATATCATTTGGTATGCCTACAAAACAACTTGTGATCAGACGGCTCACATGCATCTCACCTTATAGTGCAACAATCGCATTGGGAAGCGAAATGTCAGGCGGGATCCAAGATGTCAGAGCCGAGGACATCGTGGCCATCAATACTGAATCAGCCGTCAGGATCAAGACAGCTGTAGGTAGAGGAGCATATGTGAAAGACATATATGTGAGGAGAATGACACTGCACACAATGAAGTGGGCATTCTGGATGACTGGTAACTATGGATCACATGCTGATGGTAACTATGACAAAAATGCCTTTCCTGAGATCACTGGGATCAACTACAGAGATGTGGTGGCTGAAAATGTAACCATGGCTGCAAGGTTGGAAGGCATTGCCGACCATCCATTTACCGGGATTTGCATGTCCAATGTGACCATTGGATTGGCAAAGAAGGCAAAGAAGCAGCCATGGACATGTACTGATATTCAGGGGATCACAAGCGGTGTGACGCCAACGCCCTGTGGTCTGCTGCCTGATCAAGGAACTGATAAACCTGGTGGTTGTGATTTTCCTACAGATGATCTACCGATCGACATGGTAGAGATTAAGAAGTGTACTTATAGGAGTAATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

488

Amino Acids

53.13

Weight (kDa)

8.2

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pect-lyase_RHGA_epim PF12708 63 - 107 7.3e-06 Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28 PF00295 156 - 439 7.6e-37 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 431
AccI GTMKAC 1 cut(s) 581
AciI CCGC 3 cut(s) 586, 945, 1329
AclWI GGATC 7 cut(s) 755, 943, 956, 1013, 1117, 1169, 1328
AcoI YGGCCR 1 cut(s) 978
AcsI RAATTY 3 cut(s) 134, 542, 649
AcyI GRCGYC 1 cut(s) 1337
AfaI GTAC 4 cut(s) 152, 464, 1306, 1444
AfiI CCNNNNNNNGG 3 cut(s) 431, 1238, 1367
AflIII ACRYGT 1 cut(s) 1301
AgsI TTSAA 3 cut(s) 29, 397, 782
AjnI CCWGG 1 cut(s) 1381
AluBI AGCT 8 cut(s) 158, 173, 259, 292, 305, 574, 818, 1016
AluI AGCT 8 cut(s) 158, 173, 259, 292, 305, 574, 818, 1016
Alw21I GWGCWC 2 cut(s) 175, 289
Alw26I GTCTC 2 cut(s) 476, 802
AlwI GGATC 7 cut(s) 755, 943, 956, 1013, 1117, 1169, 1328
AoxI GGCC 5 cut(s) 69, 111, 123, 404, 978
ApeKI GCWGC 5 cut(s) 449, 452, 1202, 1291, 1357
ApoI RAATTY 3 cut(s) 134, 542, 649
AspS9I GGNCC 1 cut(s) 124
AsuC2I CCSGG 1 cut(s) 1240
AsuHPI GGTGA 4 cut(s) 328, 551, 631, 894
AxyI CCTNAGG 1 cut(s) 120
BaeI ACNNNNGTAYC 2 cut(s) 454, 487
BalI TGGCCA 1 cut(s) 980
BamHI GGATCC 1 cut(s) 948
BanII GRGCYC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 789
Bbv12I GWGCWC 2 cut(s) 175, 289
BbvI GCAGC 5 cut(s) 461, 464, 1189, 1303, 1344
BccI CCATC 8 cut(s) 206, 272, 433, 524, 737, 989, 1115, 1236
BceAI ACGGC 2 cut(s) 902, 983
BciT130I CCWGG 1 cut(s) 1383
BclI TGATCA 2 cut(s) 879, 1363
BcnI CCSGG 1 cut(s) 1240
BcoDI GTCTC 2 cut(s) 476, 802
BfmI CTRYAG 4 cut(s) 679, 1017, 1168, 1401
BglII AGATCT 1 cut(s) 627
BisI GCNGC 5 cut(s) 450, 453, 1203, 1292, 1358
BlpI GCTNAGC 2 cut(s) 260, 288
BlsI GCNGC 5 cut(s) 451, 454, 1204, 1293, 1359
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 2 cut(s) 1240, 1383
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 2 cut(s) 126, 950
BmrFI CCNGG 2 cut(s) 1240, 1383
BmrI ACTGGG 1 cut(s) 1167
BmsI GCATC 3 cut(s) 358, 436, 906
BmuI ACTGGG 1 cut(s) 1167
BpiI GAAGAC 1 cut(s) 789
BpmI CTGGAG 2 cut(s) 451, 598
Bpu1102I GCTNAGC 2 cut(s) 260, 288
BpuEI CTTGAG 1 cut(s) 18
BpuMI CCSGG 1 cut(s) 1240
BsaBI GATNNNNATC 2 cut(s) 602, 710
BsaHI GRCGYC 1 cut(s) 1337
BsaJI CCNNGG 4 cut(s) 108, 966, 1197, 1295
BsaXI ACNNNNNCTCC 2 cut(s) 1020, 1050
Bsc4I CCNNNNNNNGG 3 cut(s) 431, 1238, 1367
Bse1I ACTGG 5 cut(s) 265, 468, 615, 1102, 1162
Bse21I CCTNAGG 1 cut(s) 120
Bse3DI GCAATG 2 cut(s) 714, 1218
Bse8I GATNNNNATC 2 cut(s) 602, 710
BseBI CCWGG 1 cut(s) 1383
BseDI CCNNGG 4 cut(s) 108, 966, 1197, 1295
BseGI GGATG 6 cut(s) 373, 670, 811, 841, 1098, 1228
BseJI GATNNNNATC 2 cut(s) 602, 710
BseLI CCNNNNNNNGG 3 cut(s) 431, 1238, 1367
BseMI GCAATG 2 cut(s) 714, 1218
BseMII CTCAG 6 cut(s) 168, 183, 251, 302, 401, 1140
BseNI ACTGG 5 cut(s) 265, 468, 615, 1102, 1162
BseRI GAGGAG 4 cut(s) 114, 216, 1041, 1069
BseXI GCAGC 5 cut(s) 461, 464, 1189, 1303, 1344
BseYI CCCAGC 2 cut(s) 305, 831
BsgI GTGCAG 1 cut(s) 1052
Bsh1285I CGRYCG 1 cut(s) 1419
BshFI GGCC 5 cut(s) 71, 113, 125, 406, 980
BsiEI CGRYCG 1 cut(s) 1419
BsiHKAI GWGCWC 2 cut(s) 175, 289
BsiSI CCGG 2 cut(s) 456, 1239
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 431, 1238, 1367
BsmAI GTCTC 2 cut(s) 476, 802
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 1085
BsnI GGCC 5 cut(s) 71, 113, 125, 406, 980
Bsp1286I GDGCHC 2 cut(s) 175, 289
Bsp1720I GCTNAGC 2 cut(s) 260, 288
Bsp19I CCATGG 2 cut(s) 1197, 1295
BspACI CCGC 3 cut(s) 586, 945, 1329
BspANI GGCC 5 cut(s) 71, 113, 125, 406, 980
BspCNI CTCAG 6 cut(s) 167, 184, 252, 301, 400, 1141
BspLI GGNNCC 2 cut(s) 126, 950
BspPI GGATC 7 cut(s) 755, 943, 956, 1013, 1117, 1169, 1328
BsrDI GCAATG 2 cut(s) 714, 1218
BsrI ACTGG 5 cut(s) 265, 468, 615, 1102, 1162
BssECI CCNNGG 4 cut(s) 108, 966, 1197, 1295
BssNAI GTATAC 1 cut(s) 582
BssNI GRCGYC 1 cut(s) 1337
BssT1I CCWWGG 3 cut(s) 108, 1197, 1295
Bst1107I GTATAC 1 cut(s) 582
Bst2UI CCWGG 1 cut(s) 1383
Bst4CI ACNGT 5 cut(s) 9, 179, 558, 788, 812
Bst6I CTCTTC 1 cut(s) 436
BstACI GRCGYC 1 cut(s) 1337
BstDEI CTNAG 8 cut(s) 80, 120, 154, 192, 260, 288, 387, 1149
BstDSI CCRYGG 2 cut(s) 1197, 1295
BstENI CCTNNNNNAGG 1 cut(s) 1365
BstF5I GGATG 6 cut(s) 373, 670, 811, 841, 1098, 1228
BstMAI GTCTC 2 cut(s) 476, 802
BstMCI CGRYCG 1 cut(s) 1419
BstMWI GCNNNNNNNGC 4 cut(s) 179, 339, 920, 1280
BstNI CCWGG 1 cut(s) 1383
BstNSI RCATGY 4 cut(s) 897, 1118, 1252, 1305
BstSCI CCNGG 2 cut(s) 1238, 1381
BstSFI CTRYAG 4 cut(s) 679, 1017, 1168, 1401
BstV1I GCAGC 5 cut(s) 461, 464, 1189, 1303, 1344
BstV2I GAAGAC 1 cut(s) 789
BstX2I RGATCY 2 cut(s) 627, 948
BstXI CCANNNNNNTGG 1 cut(s) 1270
BstYI RGATCY 2 cut(s) 627, 948
BstZ17I GTATAC 1 cut(s) 582
Bsu36I CCTNAGG 1 cut(s) 120
BsuRI GGCC 5 cut(s) 71, 113, 125, 406, 980
BtgI CCRYGG 2 cut(s) 1197, 1295
BtsCI GGATG 6 cut(s) 373, 670, 811, 841, 1098, 1228
BtsI GCAGTG 1 cut(s) 1064
BtsIMutI CAGTG 6 cut(s) 184, 185, 492, 622, 1064, 1155
Cfr13I GGNCC 1 cut(s) 124
CseI GACGC 1 cut(s) 1345
CsiI ACCWGGT 1 cut(s) 1381
Csp6I GTAC 4 cut(s) 151, 463, 1305, 1443
CviAII CATG 9 cut(s) 607, 660, 894, 1115, 1198, 1249, 1296, 1302, 1423
CviQI GTAC 4 cut(s) 151, 463, 1305, 1443
DdeI CTNAG 8 cut(s) 80, 120, 154, 192, 260, 288, 387, 1149
EaeI YGGCCR 1 cut(s) 978
Eam1104I CTCTTC 1 cut(s) 436
EarI CTCTTC 1 cut(s) 436
Ecl136II GAGCTC 1 cut(s) 173
Eco130I CCWWGG 3 cut(s) 108, 1197, 1295
Eco24I GRGCYC 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 173
Eco81I CCTNAGG 1 cut(s) 120
EcoICRI GAGCTC 1 cut(s) 173
EcoNI CCTNNNNNAGG 1 cut(s) 1365
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 1381
EcoT14I CCWWGG 3 cut(s) 108, 1197, 1295
EcoT22I ATGCAT 1 cut(s) 899
EcoT38I GRGCYC 1 cut(s) 175
ErhI CCWWGG 3 cut(s) 108, 1197, 1295
FaeI CATG 9 cut(s) 610, 663, 897, 1118, 1201, 1252, 1299, 1305, 1426
FaqI GGGAC 1 cut(s) 18
FatI CATG 9 cut(s) 606, 659, 893, 1114, 1197, 1248, 1295, 1301, 1422
FauI CCCGC 2 cut(s) 593, 938
FauNDI CATATG 1 cut(s) 1033
FbaI TGATCA 2 cut(s) 879, 1363
FblI GTMKAC 1 cut(s) 581
Fnu4HI GCNGC 5 cut(s) 450, 453, 1203, 1292, 1358
FokI GGATG 6 cut(s) 380, 657, 818, 848, 1105, 1215
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 5 cut(s) 450, 453, 1203, 1292, 1358
GluI GCNGC 5 cut(s) 450, 453, 1203, 1292, 1358
GsaI CCCAGC 2 cut(s) 309, 835
GsuI CTGGAG 2 cut(s) 451, 598
HaeIII GGCC 5 cut(s) 71, 113, 125, 406, 980
HapII CCGG 2 cut(s) 456, 1239
HgaI GACGC 1 cut(s) 1345
Hin1I GRCGYC 1 cut(s) 1337
Hin1II CATG 9 cut(s) 610, 663, 897, 1118, 1201, 1252, 1299, 1305, 1426
HinfI GANTC 3 cut(s) 140, 758, 992
HpaII CCGG 2 cut(s) 456, 1239
HphI GGTGA 4 cut(s) 328, 551, 631, 894
Hpy166II GTNNAC 2 cut(s) 582, 1443
Hpy188I TCNGA 4 cut(s) 243, 627, 884, 962
Hpy188III TCNNGA 6 cut(s) 389, 755, 1003, 1009, 1090, 1148
Hpy8I GTNNAC 2 cut(s) 582, 1443
HpyAV CCTTC 6 cut(s) 431, 453, 653, 666, 1208, 1273
HpyCH4III ACNGT 5 cut(s) 9, 179, 558, 788, 812
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 339, 920, 1280
HpyF3I CTNAG 8 cut(s) 80, 120, 154, 192, 260, 288, 387, 1149
Hsp92I GRCGYC 1 cut(s) 1337
Hsp92II CATG 9 cut(s) 610, 663, 897, 1118, 1201, 1252, 1299, 1305, 1426
Ksp22I TGATCA 2 cut(s) 879, 1363
LmnI GCTCC 2 cut(s) 724, 1028
Lsp1109I GCAGC 5 cut(s) 461, 464, 1189, 1303, 1344
LweI GCATC 3 cut(s) 358, 436, 906
MabI ACCWGGT 1 cut(s) 1381
MaeIII GTNAC 9 cut(s) 103, 505, 686, 788, 1100, 1124, 1192, 1258, 1333
MboII GAAGA 6 cut(s) 27, 350, 368, 453, 580, 794
MfeI CAATTG 1 cut(s) 525
MflI RGATCY 2 cut(s) 627, 948
MhlI GDGCHC 2 cut(s) 175, 289
MlsI TGGCCA 1 cut(s) 980
MluCI AATT 8 cut(s) 134, 163, 249, 525, 542, 649, 723, 777
MluNI TGGCCA 1 cut(s) 980
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 2 cut(s) 187, 1191
Mox20I TGGCCA 1 cut(s) 980
Mph1103I ATGCAT 1 cut(s) 899
MscI TGGCCA 1 cut(s) 980
MseI TTAA 3 cut(s) 11, 822, 1434
MslI CAYNNNNRTG 5 cut(s) 366, 695, 1049, 1119, 1300
Msp20I TGGCCA 1 cut(s) 980
MspA1I CMGCKG 2 cut(s) 305, 1016
MspI CCGG 2 cut(s) 456, 1239
MspR9I CCNGG 2 cut(s) 1240, 1383
MunI CAATTG 1 cut(s) 525
Mva1269I GAATGC 1 cut(s) 1085
MvaI CCWGG 1 cut(s) 1383
MwoI GCNNNNNNNGC 4 cut(s) 179, 339, 920, 1280
NciI CCSGG 1 cut(s) 1240
NcoI CCATGG 2 cut(s) 1197, 1295
NdeI CATATG 1 cut(s) 1033
NlaIII CATG 9 cut(s) 610, 663, 897, 1118, 1201, 1252, 1299, 1305, 1426
NlaIV GGNNCC 2 cut(s) 126, 950
NmeAIII GCCGAG 1 cut(s) 991
NmuCI GTSAC 2 cut(s) 1258, 1333
NsiI ATGCAT 1 cut(s) 899
NspI RCATGY 4 cut(s) 897, 1118, 1252, 1305
PciI ACATGT 1 cut(s) 1301
PctI GAATGC 1 cut(s) 1085
PfeI GAWTC 2 cut(s) 758, 992
PflMI CCANNNNNTGG 1 cut(s) 431
PkrI GCNGC 5 cut(s) 451, 454, 1204, 1293, 1359
Ple19I CGATCG 1 cut(s) 1419
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PscI ACATGT 1 cut(s) 1301
Psp124BI GAGCTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 1381
PspFI CCCAGC 2 cut(s) 305, 831
PspGI CCWGG 1 cut(s) 1381
PspN4I GGNNCC 2 cut(s) 126, 950
PspPI GGNCC 1 cut(s) 124
PsuI RGATCY 2 cut(s) 627, 948
PvuI CGATCG 1 cut(s) 1419
PvuII CAGCTG 2 cut(s) 305, 1016
RsaI GTAC 4 cut(s) 152, 464, 1306, 1444
RsaNI GTAC 4 cut(s) 151, 463, 1305, 1443
RseI CAYNNNNRTG 5 cut(s) 366, 695, 1049, 1119, 1300
SacI GAGCTC 1 cut(s) 175
SaqAI TTAA 3 cut(s) 11, 822, 1434
SatI GCNGC 5 cut(s) 450, 453, 1203, 1292, 1358
Sau96I GGNCC 1 cut(s) 124
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 1240, 1383
SduI GDGCHC 2 cut(s) 175, 289
SexAI ACCWGGT 1 cut(s) 1381
SfaNI GCATC 3 cut(s) 358, 436, 906
SfcI CTRYAG 4 cut(s) 679, 1017, 1168, 1401
SmiMI CAYNNNNRTG 5 cut(s) 366, 695, 1049, 1119, 1300
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 8 cut(s) 134, 163, 249, 525, 542, 649, 723, 777
SsiI CCGC 3 cut(s) 586, 945, 1329
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 2 cut(s) 1238, 1381
StyI CCWWGG 3 cut(s) 108, 1197, 1295
TaaI ACNGT 5 cut(s) 9, 179, 558, 788, 812
TaqI TCGA 1 cut(s) 1419
TasI AATT 8 cut(s) 134, 163, 249, 525, 542, 649, 723, 777
TatI WGTACW 3 cut(s) 150, 1304, 1442
TfiI GAWTC 2 cut(s) 758, 992
Tru1I TTAA 3 cut(s) 11, 822, 1434
Tru9I TTAA 3 cut(s) 11, 822, 1434
TscAI CASTG 6 cut(s) 184, 192, 499, 622, 1071, 1162
TseFI GTSAC 2 cut(s) 1258, 1333
TseI GCWGC 5 cut(s) 449, 452, 1202, 1291, 1357
Tsp45I GTSAC 2 cut(s) 1258, 1333
TspDTI ATGAA 7 cut(s) 43, 56, 176, 648, 659, 717, 1091
TspRI CASTG 6 cut(s) 184, 192, 499, 622, 1071, 1162
Van91I CCANNNNNTGG 1 cut(s) 431
XagI CCTNNNNNAGG 1 cut(s) 1365
XapI RAATTY 3 cut(s) 134, 542, 649
XceI RCATGY 4 cut(s) 897, 1118, 1252, 1305
XcmI CCANNNNNNNNNTGG 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 581
ZrmI AGTACT 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.