Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005230

Physical Location & Seq

Genomic Coordinates Reverse (-)

23594159 .. 23595093

Gene Structure 935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1112000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGATTAAGATTATGAAATTATGTTGTTGCAGTAATATTCTTGTGAAAGGGATTACAATCATAGCTCCAATTTCATCTCCAAACACAGGATGGCATCAACCCAGGTTTGAACTTAGATACAAGTGGCCGAGTACACTAACTGGCCTAACTCATATCTCGAACTTTTGGTATTTTATTGCAGATTCTTGCACCAATACGAGAATAAAAGACTGCTACATAGCATTCGGAATGCCTACAAAACAACTAGTAATCCGACGGCTCATATGCATTTCTCCCTACAGCGCCACCATCGCATTAGGAAGCGAAATGTCCAGCGGGATCCAAGATGTCCGAGCCGAAGACATCGTGGCCATCCGTACTGAATCGGGTGTTCAGATCAAGACAGTCGTAGGGAGAGGAAGGTACGTGAAAGACGTATACGCGAGAAGATTCACCATGTGCACAATGAAATGGGCGTTTTGGATGACCGGCAATTACGGGTCACATGCTGATGGAAAATATGATAAAAAAGCAGTGTCTGAGATCAATAATATTAACTACAAGGACATGGTGGCAGATAACGGAACAATGGCTGCAAGCCAACCACCTCAGCAGCCGTGGATGTGCTCTGATGTTGAAGGGATAACGAGCGGTGTGATGCCTCGCCCTTGTGATCTGCTGCCGAATCAGGGTGCTGAGAAAGCTACAGCTTGTGATTTTCCGGCAGATGATCTGCCAATTGACTTGGTGGAGCTCAAACAATGTACTTATATGATGAGCTCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28 Pectate_lyase_3

Protein Analysis

256

Amino Acids

28.5

Weight (kDa)

8.44

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61490 AT3G61490 AT3G61490 AT3G61490 AT3G61490
fragaria_vesca	FvH4_3g12401 FvH4_7g15040
malus_domestica	MD00G1112000.v1.1 MD01G1069000.v1.1
prunus_persica	Prupe.2G175100_v2.0.a1 Prupe.2G175100_v2.0.a1
pyrus_communis	pycom01g09850
rosa_chinensis	RchiOBHm_Chr1g0357161 RchiOBHm_Chr5g0020281
rosa_laevigata	RLG00000028048
rosa_multiflora	Rmu_sc0005967.1_g000009 Rmu_sc0006896.1_g000016 Rmu_sc0023664.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299030
rosa_rugosa	Rorug01G0254400 Rorug05G0058300
rosa_samantha	Rh1AG268700 Rh1BG236400 Rh1DG263500 Rh5BG148200 Rh5CG159700 Rh5DG147100
rosa_wichuraiana	Rw1G023710 Rw5G013160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	630
AccI	GTMKAC	1 cut(s)	417
AccII	CGCG	1 cut(s)	422
AciI	CCGC	2 cut(s)	315, 630
AclWI	GGATC	2 cut(s)	313, 326
AcoI	YGGCCR	2 cut(s)	125, 348
AdeI	CACNNNGTG	1 cut(s)	438
AfaI	GTAC	4 cut(s)	133, 358, 404, 745
AfiI	CCNNNNNNNGG	2 cut(s)	86, 668
AgsI	TTSAA	2 cut(s)	110, 617
AhlI	ACTAGT	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	5 cut(s)	65, 683, 689, 733, 759
AluI	AGCT	5 cut(s)	65, 683, 689, 733, 759
Alw21I	GWGCWC	4 cut(s)	443, 608, 735, 761
Alw44I	GTGCAC	1 cut(s)	439
AlwI	GGATC	2 cut(s)	313, 326
AlwNI	CAGNNNCTG	1 cut(s)	518
AoxI	GGCC	3 cut(s)	125, 142, 348
ApaLI	GTGCAC	1 cut(s)	439
ApeKI	GCWGC	3 cut(s)	572, 592, 658
AspLEI	GCGC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	424
BaeGI	GKGCMC	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	350
BamHI	GGATCC	1 cut(s)	318
BanII	GRGCYC	2 cut(s)	735, 761
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	4 cut(s)	443, 608, 735, 761
BbvCI	CCTCAGC	1 cut(s)	588
BbvI	GCAGC	3 cut(s)	559, 604, 645
BccI	CCATC	4 cut(s)	84, 296, 359, 485
BceAI	ACGGC	2 cut(s)	272, 580
BciT130I	CCWGG	1 cut(s)	103
BcuI	ACTAGT	1 cut(s)	244
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	2 cut(s)	277, 684
BfoI	RGCGCY	1 cut(s)	285
BisI	GCNGC	3 cut(s)	573, 593, 659
BlsI	GCNGC	3 cut(s)	574, 594, 660
Bme1390I	CCNGG	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	2 cut(s)	103, 627
BpiI	GAAGAC	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	588
BsaAI	YACGTR	1 cut(s)	406
BsaBI	GATNNNNATC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	101, 596
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 668
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	145
Bse8I	GATNNNNATC	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	2 cut(s)	101, 596
BseGI	GGATG	4 cut(s)	95, 351, 468, 606
BseJI	GATNNNNATC	1 cut(s)	56
BseLI	CCNNNNNNNGG	2 cut(s)	86, 668
BseMII	CTCAG	3 cut(s)	510, 602, 666
BseNI	ACTGG	1 cut(s)	145
BseSI	GKGCMC	1 cut(s)	443
BseXI	GCAGC	3 cut(s)	559, 604, 645
Bsh1236I	CGCG	1 cut(s)	422
BshFI	GGCC	3 cut(s)	127, 144, 350
BsiHKAI	GWGCWC	4 cut(s)	443, 608, 735, 761
BsiSI	CCGG	2 cut(s)	468, 701
BslI	CCNNNNNNNGG	2 cut(s)	86, 668
BsmI	GAATGC	2 cut(s)	221, 234
BsnI	GGCC	3 cut(s)	127, 144, 350
Bsp1286I	GDGCHC	4 cut(s)	443, 608, 735, 761
Bsp143I	GATC	5 cut(s)	318, 375, 522, 652, 709
BspACI	CCGC	2 cut(s)	315, 630
BspANI	GGCC	3 cut(s)	127, 144, 350
BspCNI	CTCAG	3 cut(s)	511, 601, 667
BspFNI	CGCG	1 cut(s)	422
BspLI	GGNNCC	1 cut(s)	320
BspPI	GGATC	2 cut(s)	313, 326
BsrBI	CCGCTC	1 cut(s)	630
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	101, 596
BssMI	GATC	5 cut(s)	318, 375, 522, 652, 709
BssNAI	GTATAC	1 cut(s)	418
Bst1107I	GTATAC	1 cut(s)	418
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	385
BstBAI	YACGTR	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	577
BstDEI	CTNAG	4 cut(s)	113, 519, 588, 675
BstDSI	CCRYGG	1 cut(s)	596
BstF5I	GGATG	4 cut(s)	95, 351, 468, 606
BstFNI	CGCG	1 cut(s)	422
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	5 cut(s)	321, 378, 525, 655, 712
BstMBI	GATC	5 cut(s)	318, 375, 522, 652, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 680
BstNI	CCWGG	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	101
BstSFI	CTRYAG	2 cut(s)	277, 684
BstSLI	GKGCMC	1 cut(s)	443
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	3 cut(s)	559, 604, 645
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BstZ17I	GTATAC	1 cut(s)	418
BsuRI	GGCC	3 cut(s)	127, 144, 350
BtgI	CCRYGG	1 cut(s)	596
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	4 cut(s)	95, 351, 468, 606
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	519
Cac8I	GCNNGC	1 cut(s)	577
CaiI	CAGNNNCTG	1 cut(s)	518
CfoI	GCGC	1 cut(s)	284
Cfr10I	RCCGGY	1 cut(s)	467
Csp6I	GTAC	4 cut(s)	132, 357, 403, 744
CviAII	CATG	3 cut(s)	436, 485, 547
CviQI	GTAC	4 cut(s)	132, 357, 403, 744
DdeI	CTNAG	4 cut(s)	113, 519, 588, 675
DpnI	GATC	5 cut(s)	320, 377, 524, 654, 711
DpnII	GATC	5 cut(s)	318, 375, 522, 652, 709
DraIII	CACNNNGTG	1 cut(s)	438
EaeI	YGGCCR	2 cut(s)	125, 348
Ecl136II	GAGCTC	2 cut(s)	733, 759
Eco24I	GRGCYC	2 cut(s)	735, 761
Eco53kI	GAGCTC	2 cut(s)	733, 759
EcoICRI	GAGCTC	2 cut(s)	733, 759
EcoRII	CCWGG	1 cut(s)	101
EcoT22I	ATGCAT	1 cut(s)	269
EcoT38I	GRGCYC	2 cut(s)	735, 761
FaeI	CATG	3 cut(s)	439, 488, 550
FatI	CATG	3 cut(s)	435, 484, 546
FauI	CCCGC	1 cut(s)	308
FauNDI	CATATG	1 cut(s)	263
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	3 cut(s)	573, 593, 659
FokI	GGATG	4 cut(s)	102, 338, 475, 613
FriOI	GRGCYC	2 cut(s)	735, 761
Fsp4HI	GCNGC	3 cut(s)	573, 593, 659
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	3 cut(s)	573, 593, 659
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	127, 144, 350
HapII	CCGG	2 cut(s)	468, 701
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	3 cut(s)	439, 488, 550
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HinfI	GANTC	4 cut(s)	182, 362, 429, 664
HpaII	CCGG	2 cut(s)	468, 701
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	3 cut(s)	134, 418, 441
Hpy188I	TCNGA	6 cut(s)	227, 254, 332, 375, 520, 610
Hpy188III	TCNNGA	2 cut(s)	157, 379
Hpy8I	GTNNAC	3 cut(s)	134, 418, 441
Hpy99I	CGWCG	1 cut(s)	258
HpyAV	CCTTC	2 cut(s)	393, 611
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	2 cut(s)	405, 414
HpyCH4V	TGCA	6 cut(s)	30, 179, 189, 267, 441, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 680
HpyF3I	CTNAG	4 cut(s)	113, 519, 588, 675
HpySE526I	ACGT	2 cut(s)	405, 414
Hsp92II	CATG	3 cut(s)	439, 488, 550
HspAI	GCGC	1 cut(s)	282
Kzo9I	GATC	5 cut(s)	318, 375, 522, 652, 709
LmnI	GCTCC	2 cut(s)	70, 730
LpnPI	CCDG	8 cut(s)	72, 88, 115, 126, 325, 481, 653, 714
Lsp1109I	GCAGC	3 cut(s)	559, 604, 645
LweI	GCATC	2 cut(s)	103, 627
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	2 cut(s)	405, 414
MaeIII	GTNAC	1 cut(s)	480
MalI	GATC	5 cut(s)	320, 377, 524, 654, 711
MbiI	CCGCTC	1 cut(s)	630
MboI	GATC	5 cut(s)	318, 375, 522, 652, 709
MboII	GAAGA	2 cut(s)	350, 438
MfeI	CAATTG	1 cut(s)	717
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	4 cut(s)	443, 608, 735, 761
MlsI	TGGCCA	1 cut(s)	350
MluCI	AATT	4 cut(s)	17, 69, 472, 717
MluNI	TGGCCA	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	3 cut(s)	389, 597, 651
Mox20I	TGGCCA	1 cut(s)	350
Mph1103I	ATGCAT	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	350
MseI	TTAA	2 cut(s)	6, 534
MslI	CAYNNNNRTG	1 cut(s)	489
Msp20I	TGGCCA	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	2 cut(s)	468, 701
MspR9I	CCNGG	1 cut(s)	103
MunI	CAATTG	1 cut(s)	717
Mva1269I	GAATGC	2 cut(s)	221, 234
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	2 cut(s)	290, 680
NdeI	CATATG	1 cut(s)	263
NdeII	GATC	5 cut(s)	318, 375, 522, 652, 709
NlaIII	CATG	3 cut(s)	439, 488, 550
NlaIV	GGNNCC	1 cut(s)	320
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	480
NsiI	ATGCAT	1 cut(s)	269
NspI	RCATGY	1 cut(s)	488
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PctI	GAATGC	2 cut(s)	221, 234
PfeI	GAWTC	4 cut(s)	182, 362, 429, 664
PkrI	GCNGC	3 cut(s)	574, 594, 660
Ppu21I	YACGTR	1 cut(s)	406
Psp124BI	GAGCTC	2 cut(s)	735, 761
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	320
PstNI	CAGNNNCTG	1 cut(s)	518
PsuI	RGATCY	1 cut(s)	318
RsaI	GTAC	4 cut(s)	133, 358, 404, 745
RsaNI	GTAC	4 cut(s)	132, 357, 403, 744
RseI	CAYNNNNRTG	1 cut(s)	489
SacI	GAGCTC	2 cut(s)	735, 761
SaqAI	TTAA	2 cut(s)	6, 534
SatI	GCNGC	3 cut(s)	573, 593, 659
Sau3AI	GATC	5 cut(s)	318, 375, 522, 652, 709
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	4 cut(s)	443, 608, 735, 761
SfaNI	GCATC	2 cut(s)	103, 627
SfcI	CTRYAG	2 cut(s)	277, 684
SmiMI	CAYNNNNRTG	1 cut(s)	489
SpeI	ACTAGT	1 cut(s)	244
Sse9I	AATT	4 cut(s)	17, 69, 472, 717
SsiI	CCGC	2 cut(s)	315, 630
SspI	AATATT	2 cut(s)	37, 532
SspMI	CTAG	1 cut(s)	245
SstI	GAGCTC	2 cut(s)	735, 761
StyD4I	CCNGG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	2 cut(s)	408, 417
TaqI	TCGA	1 cut(s)	158
TasI	AATT	4 cut(s)	17, 69, 472, 717
TatI	WGTACW	2 cut(s)	131, 743
TfiI	GAWTC	4 cut(s)	182, 362, 429, 664
Tru1I	TTAA	2 cut(s)	6, 534
Tru9I	TTAA	2 cut(s)	6, 534
TscAI	CASTG	1 cut(s)	519
TseFI	GTSAC	1 cut(s)	480
TseI	GCWGC	3 cut(s)	572, 592, 658
Tsp45I	GTSAC	1 cut(s)	480
TspDTI	ATGAA	3 cut(s)	29, 63, 461
TspGWI	ACGGA	2 cut(s)	344, 576
TspRI	CASTG	1 cut(s)	519
VneI	GTGCAC	1 cut(s)	439
XceI	RCATGY	1 cut(s)	488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	87
XmiI	GTMKAC	1 cut(s)	417
XspI	CTAG	1 cut(s)	245
Zsp2I	ATGCAT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.