Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005230

Physical Location & Seq

Genomic Coordinates Forward (+)

22097997 .. 22100792

Gene Structure 2796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G175100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGGAGTTGTTGGGAAGAAGAACCCAAGTGATTAAATTATTCCTAGTACTTGTTGTGGTGGGGTTACTAAAAGGAGCAGAGAGCAGAAAAACCATGAAATTTGAATCACTTGAGTACACTGCTATAAGCTGCAGAGCTCACAGTGCGTCACTGACTGAATTTGGAGGAGTTGGAGATGGAAAGACATCAAACACAAAGGCTTTCCAGGCTGCAATCAGTCAGCTGAGCCAATATGCAAGTGAAGGAGGTGCTCAGCTCTTTGTTCCAGCTGGGAAATGGTTGACAGGAAGCTTCAACCTCATCAGCCACTTCACTCTCTATCTCCACAAGGATGCTGTTCTGCTAGCTTCTCAGGATATGAACGAATGGCCTGTGCTCAAACCCCTGCCATCTTATGGTCGAGGAAGGGATGCAGCAGCTGGAAGGTTCAGCAGTCTCATATTTGGAACAAATCTCACTGATGTCATTGTTACAGGAGACAATGGCACAATTGATGGCCAAGGTGAATTCTGGTGGCAGCAGTTCCACAAGAAGAAGCTAAAATACACCCGACCTTACCTGATTGAGATCATGTTCTCAACCGATATCCAAATTTCAAATCTAACTCTCCTAGACTCTCCATCATGGAATGTTCATCCTGTTTACAGCAGTAATATTCTTGTGCAAGGGATTACGATCATCGCTCCAATTACATCTCCAAACACAGATGGGATCAACCCAGATTCTTGCACCAATACTAGAATTGAAGACTGTTACATAGTCTCTGGGGATGACTGTGTGGCTGTGAAGAGCGGTTGGGATGAGTATGGTATAGCATTTGGACGGCCTACAAAACAGCTAGTAATCAGACGGCTCACATGCATTTCACCCTACAGTGCCACCATTGCATTAGGCAGTGAAATGTCCGGCGGGATCCAAGATGTCAGAGCCGAAGACATCGTGGCCATCCATACCGAATCGGGGATCAGGATCAAGACAGCTGTAGGGAGAGGAGGGTACGTGAAGGACATATATGTGAGGAGAATGACCATGCACACCATGAAATGGGTATTTAAAATGAATGGGGATTATGGGTCACATGCTGATGACAAGTACGATAAAAATGCAATTCCTGAGATCAAAGGGATCAACTATAGGGACATGGTGGCTGATAATGTAACAATAGCTGCAAGATTGGAAGGCATTGCAGATCACCCCTTCACGGGGATTTGCATTTCGAATGTAACCATTGGATTGGCGGCAAAGGCAAAGAAGCAGCCGTGGACATGCACCAACATTGAGGGAATTACAAGTGGCGTGACGCCTCGCTCTTGTGACCTGCTGCCTGATCAGGGTCATGACAAAGCTACAGCTTGTGAATTTCCTGCAGATAATCTACCAATTGACTTGGTAGAGTTAAAGCAGTGTACATATAGGATGAGCTATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28 Pectate_lyase_3

Protein Analysis

477

Amino Acids

52.29

Weight (kDa)

6.79

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61490 AT3G61490 AT3G61490 AT3G61490 AT3G61490
fragaria_vesca	FvH4_3g12401 FvH4_7g15040
malus_domestica	MD00G1112000.v1.1 MD01G1069000.v1.1
prunus_persica	Prupe.2G175100_v2.0.a1 Prupe.2G175100_v2.0.a1
pyrus_communis	pycom01g09850
rosa_chinensis	RchiOBHm_Chr1g0357161 RchiOBHm_Chr5g0020281
rosa_laevigata	RLG00000028048
rosa_multiflora	Rmu_sc0005967.1_g000009 Rmu_sc0006896.1_g000016 Rmu_sc0023664.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299030
rosa_rugosa	Rorug01G0254400 Rorug05G0058300
rosa_samantha	Rh1AG268700 Rh1BG236400 Rh1DG263500 Rh5BG148200 Rh5CG159700 Rh5DG147100
rosa_wichuraiana	Rw1G023710 Rw5G013160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1326
AccB7I	CCANNNNNTGG	2 cut(s)	395, 1044
AccBSI	CCGCTC	1 cut(s)	792
AciI	CCGC	3 cut(s)	792, 909, 1238
AclWI	GGATC	6 cut(s)	719, 907, 920, 971, 977, 1133
AcoI	YGGCCR	2 cut(s)	496, 942
AcsI	RAATTY	5 cut(s)	98, 158, 506, 591, 1358
AcyI	GRCGYC	1 cut(s)	1301
AfaI	GTAC	5 cut(s)	48, 116, 998, 1094, 1408
AfiI	CCNNNNNNNGG	7 cut(s)	395, 960, 1044, 1201, 1202, 1203, 1331
AgsI	TTSAA	4 cut(s)	104, 295, 597, 746
AjnI	CCWGG	1 cut(s)	204
Alw21I	GWGCWC	3 cut(s)	139, 253, 378
Alw26I	GTCTC	3 cut(s)	440, 471, 766
AlwI	GGATC	6 cut(s)	719, 907, 920, 971, 977, 1133
AlwNI	CAGNNNCTG	1 cut(s)	419
AoxI	GGCC	4 cut(s)	368, 496, 824, 942
ApeKI	GCWGC	8 cut(s)	129, 209, 413, 416, 517, 1166, 1255, 1321
ApoI	RAATTY	5 cut(s)	98, 158, 506, 591, 1358
AsuHPI	GGTGA	3 cut(s)	515, 858, 1184
AsuII	TTCGAA	1 cut(s)	1217
AsuNHI	GCTAGC	1 cut(s)	343
BalI	TGGCCA	2 cut(s)	498, 944
BamHI	GGATCC	1 cut(s)	912
BanII	GRGCYC	1 cut(s)	139
BarI	GAAGNNNNNNTAC	2 cut(s)	527, 559
BbsI	GAAGAC	2 cut(s)	753, 939
Bbv12I	GWGCWC	3 cut(s)	139, 253, 378
BbvI	GCAGC	8 cut(s)	116, 196, 425, 428, 529, 1153, 1267, 1308
BccI	CCATC	6 cut(s)	170, 397, 488, 628, 701, 953
BceAI	ACGGC	3 cut(s)	839, 866, 1243
BcgI	CGANNNNNNTGC	2 cut(s)	1085, 1119
BciT130I	CCWGG	1 cut(s)	206
BclI	TGATCA	1 cut(s)	1327
BcoDI	GTCTC	3 cut(s)	440, 471, 766
BfaI	CTAG	5 cut(s)	44, 344, 611, 738, 839
BfmI	CTRYAG	6 cut(s)	130, 871, 981, 1132, 1347, 1365
BfuAI	ACCTGC	1 cut(s)	1326
BisI	GCNGC	9 cut(s)	130, 210, 414, 417, 518, 1167, 1239, 1256, 1322
BlpI	GCTNAGC	2 cut(s)	224, 252
BlsI	GCNGC	9 cut(s)	131, 211, 415, 418, 519, 1168, 1240, 1257, 1323
BmcAI	AGTACT	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	914
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	2 cut(s)	322, 400
BmtI	GCTAGC	1 cut(s)	347
BpiI	GAAGAC	2 cut(s)	753, 939
Bpu1102I	GCTNAGC	2 cut(s)	224, 252
Bpu14I	TTCGAA	1 cut(s)	1217
BpuEI	CTTGAG	1 cut(s)	131
BsaAI	YACGTR	1 cut(s)	1000
BsaBI	GATNNNNATC	3 cut(s)	566, 674, 968
BsaHI	GRCGYC	1 cut(s)	1301
BsaJI	CCNNGG	2 cut(s)	499, 1259
BsaXI	ACNNNNNCTCC	2 cut(s)	984, 1014
Bsc4I	CCNNNNNNNGG	7 cut(s)	395, 960, 1044, 1201, 1202, 1203, 1331
Bse3DI	GCAATG	2 cut(s)	882, 1182
Bse8I	GATNNNNATC	3 cut(s)	566, 674, 968
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	2 cut(s)	499, 1259
BseGI	GGATG	7 cut(s)	337, 415, 634, 775, 805, 945, 1422
BseJI	GATNNNNATC	3 cut(s)	566, 674, 968
BseLI	CCNNNNNNNGG	7 cut(s)	395, 960, 1044, 1201, 1202, 1203, 1331
BseMI	GCAATG	2 cut(s)	882, 1182
BseMII	CTCAG	4 cut(s)	215, 266, 365, 1104
BseRI	GAGGAG	3 cut(s)	180, 1005, 1033
BseXI	GCAGC	8 cut(s)	116, 196, 425, 428, 529, 1153, 1267, 1308
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	4 cut(s)	370, 498, 826, 944
BsiHKAI	GWGCWC	3 cut(s)	139, 253, 378
BsiSI	CCGG	1 cut(s)	906
BslFI	GGGAC	1 cut(s)	1151
BslI	CCNNNNNNNGG	7 cut(s)	395, 960, 1044, 1201, 1202, 1203, 1331
BsmAI	GTCTC	3 cut(s)	440, 471, 766
BsmFI	GGGAC	1 cut(s)	1151
BsnI	GGCC	4 cut(s)	370, 498, 826, 944
Bsp119I	TTCGAA	1 cut(s)	1217
Bsp1286I	GDGCHC	3 cut(s)	139, 253, 378
Bsp1407I	TGTACA	1 cut(s)	1406
Bsp1720I	GCTNAGC	2 cut(s)	224, 252
BspACI	CCGC	3 cut(s)	792, 909, 1238
BspANI	GGCC	4 cut(s)	370, 498, 826, 944
BspCNI	CTCAG	4 cut(s)	216, 265, 364, 1105
BspHI	TCATGA	1 cut(s)	1336
BspLI	GGNNCC	1 cut(s)	914
BspMAI	CTGCAG	2 cut(s)	134, 1369
BspMI	ACCTGC	1 cut(s)	1326
BspOI	GCTAGC	1 cut(s)	347
BspPI	GGATC	6 cut(s)	719, 907, 920, 971, 977, 1133
BspQI	GCTCTTC	1 cut(s)	782
BspT104I	TTCGAA	1 cut(s)	1217
BsrBI	CCGCTC	1 cut(s)	792
BsrDI	GCAATG	2 cut(s)	882, 1182
BsrGI	TGTACA	1 cut(s)	1406
BssECI	CCNNGG	2 cut(s)	499, 1259
BssNI	GRCGYC	1 cut(s)	1301
BssT1I	CCWWGG	1 cut(s)	499
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	4 cut(s)	143, 752, 776, 875
Bst6I	CTCTTC	1 cut(s)	782
BstACI	GRCGYC	1 cut(s)	1301
BstAUI	TGTACA	1 cut(s)	1406
BstBAI	YACGTR	1 cut(s)	1000
BstBI	TTCGAA	1 cut(s)	1217
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	4 cut(s)	224, 252, 351, 1113
BstDSI	CCRYGG	1 cut(s)	1259
BstF5I	GGATG	7 cut(s)	337, 415, 634, 775, 805, 945, 1422
BstMAI	GTCTC	3 cut(s)	440, 471, 766
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 206, 884, 1244
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	3 cut(s)	861, 1082, 1269
BstSCI	CCNGG	1 cut(s)	204
BstSFI	CTRYAG	6 cut(s)	130, 871, 981, 1132, 1347, 1365
BstV1I	GCAGC	8 cut(s)	116, 196, 425, 428, 529, 1153, 1267, 1308
BstV2I	GAAGAC	2 cut(s)	753, 939
BstX2I	RGATCY	1 cut(s)	912
BstXI	CCANNNNNNTGG	1 cut(s)	1234
BstYI	RGATCY	1 cut(s)	912
BsuRI	GGCC	4 cut(s)	370, 498, 826, 944
BtgI	CCRYGG	1 cut(s)	1259
BtgZI	GCGATG	1 cut(s)	664
BtsCI	GGATG	7 cut(s)	337, 415, 634, 775, 805, 945, 1422
BtsI	GCAGTG	3 cut(s)	117, 901, 1409
BtsIMutI	CAGTG	7 cut(s)	117, 148, 149, 456, 880, 901, 1409
BveI	ACCTGC	1 cut(s)	1326
Cac8I	GCNNGC	1 cut(s)	345
CaiI	CAGNNNCTG	1 cut(s)	419
CciI	TCATGA	1 cut(s)	1336
CseI	GACGC	2 cut(s)	135, 1309
Csp6I	GTAC	5 cut(s)	47, 115, 997, 1093, 1407
CviQI	GTAC	5 cut(s)	47, 115, 997, 1093, 1407
DdeI	CTNAG	4 cut(s)	224, 252, 351, 1113
DraI	TTTAAA	1 cut(s)	1054
EaeI	YGGCCR	2 cut(s)	496, 942
Eam1104I	CTCTTC	1 cut(s)	782
EarI	CTCTTC	1 cut(s)	782
Ecl136II	GAGCTC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	139
Eco32I	GATATC	1 cut(s)	586
Eco53kI	GAGCTC	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	204
EcoRV	GATATC	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	499
EcoT22I	ATGCAT	1 cut(s)	863
EcoT38I	GRGCYC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	499
FaqI	GGGAC	1 cut(s)	1151
FauI	CCCGC	1 cut(s)	902
FbaI	TGATCA	1 cut(s)	1327
Fnu4HI	GCNGC	9 cut(s)	130, 210, 414, 417, 518, 1167, 1239, 1256, 1322
FokI	GGATG	6 cut(s)	344, 422, 621, 782, 812, 932
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	9 cut(s)	130, 210, 414, 417, 518, 1167, 1239, 1256, 1322
FspBI	CTAG	5 cut(s)	44, 344, 611, 738, 839
GluI	GCNGC	9 cut(s)	130, 210, 414, 417, 518, 1167, 1239, 1256, 1322
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	4 cut(s)	370, 498, 826, 944
HapII	CCGG	1 cut(s)	906
HgaI	GACGC	2 cut(s)	135, 1309
Hin1I	GRCGYC	1 cut(s)	1301
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HindIII	AAGCTT	1 cut(s)	289
HinfI	GANTC	4 cut(s)	104, 614, 722, 956
HpaII	CCGG	1 cut(s)	906
HphI	GGTGA	3 cut(s)	515, 858, 1184
Hpy166II	GTNNAC	5 cut(s)	117, 282, 643, 1263, 1407
Hpy188I	TCNGA	2 cut(s)	848, 926
Hpy188III	TCNNGA	5 cut(s)	353, 967, 973, 1112, 1337
Hpy8I	GTNNAC	5 cut(s)	117, 282, 643, 1263, 1407
HpyAV	CCTTC	6 cut(s)	236, 399, 417, 997, 1172, 1207
HpyCH4III	ACNGT	4 cut(s)	143, 752, 776, 875
HpyCH4IV	ACGT	1 cut(s)	999
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 206, 884, 1244
HpyF3I	CTNAG	4 cut(s)	224, 252, 351, 1113
HpySE526I	ACGT	1 cut(s)	999
Hsp92I	GRCGYC	1 cut(s)	1301
Ksp22I	TGATCA	1 cut(s)	1327
LguI	GCTCTTC	1 cut(s)	782
LmnI	GCTCC	2 cut(s)	74, 688
Lsp1109I	GCAGC	8 cut(s)	116, 196, 425, 428, 529, 1153, 1267, 1308
LweI	GCATC	2 cut(s)	322, 400
MaeI	CTAG	5 cut(s)	44, 344, 611, 738, 839
MaeII	ACGT	1 cut(s)	999
MaeIII	GTNAC	9 cut(s)	63, 147, 469, 752, 1074, 1156, 1222, 1297, 1313
MbiI	CCGCTC	1 cut(s)	792
MboII	GAAGA	6 cut(s)	27, 30, 544, 758, 799, 944
MfeI	CAATTG	2 cut(s)	489, 1380
MflI	RGATCY	1 cut(s)	912
MhlI	GDGCHC	3 cut(s)	139, 253, 378
MlsI	TGGCCA	2 cut(s)	498, 944
MluNI	TGGCCA	2 cut(s)	498, 944
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	9 cut(s)	158, 239, 308, 395, 983, 986, 1011, 1273, 1314
Mox20I	TGGCCA	2 cut(s)	498, 944
Mph1103I	ATGCAT	1 cut(s)	863
MscI	TGGCCA	2 cut(s)	498, 944
MseI	TTAA	3 cut(s)	33, 1053, 1397
MslI	CAYNNNNRTG	3 cut(s)	330, 1013, 1083
Msp20I	TGGCCA	2 cut(s)	498, 944
MspA1I	CMGCKG	4 cut(s)	223, 269, 419, 980
MspI	CCGG	1 cut(s)	906
MspR9I	CCNGG	1 cut(s)	206
MunI	CAATTG	2 cut(s)	489, 1380
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	4 cut(s)	143, 206, 884, 1244
NheI	GCTAGC	1 cut(s)	343
NlaIV	GGNNCC	1 cut(s)	914
NmuCI	GTSAC	4 cut(s)	147, 1074, 1297, 1313
NsiI	ATGCAT	1 cut(s)	863
NspI	RCATGY	3 cut(s)	861, 1082, 1269
NspV	TTCGAA	1 cut(s)	1217
PagI	TCATGA	1 cut(s)	1336
PciSI	GCTCTTC	1 cut(s)	782
PfeI	GAWTC	3 cut(s)	104, 722, 956
PflMI	CCANNNNNTGG	2 cut(s)	395, 1044
PkrI	GCNGC	9 cut(s)	131, 211, 415, 418, 519, 1168, 1240, 1257, 1323
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
Ppu21I	YACGTR	1 cut(s)	1000
Psp124BI	GAGCTC	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	204
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	914
PstI	CTGCAG	2 cut(s)	134, 1369
PstNI	CAGNNNCTG	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	912
PvuII	CAGCTG	4 cut(s)	223, 269, 419, 980
RsaI	GTAC	5 cut(s)	48, 116, 998, 1094, 1408
RsaNI	GTAC	5 cut(s)	47, 115, 997, 1093, 1407
RseI	CAYNNNNRTG	3 cut(s)	330, 1013, 1083
SacI	GAGCTC	1 cut(s)	139
SapI	GCTCTTC	1 cut(s)	782
SaqAI	TTAA	3 cut(s)	33, 1053, 1397
SatI	GCNGC	9 cut(s)	130, 210, 414, 417, 518, 1167, 1239, 1256, 1322
ScaI	AGTACT	1 cut(s)	48
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	3 cut(s)	139, 253, 378
SfaNI	GCATC	2 cut(s)	322, 400
SfcI	CTRYAG	6 cut(s)	130, 871, 981, 1132, 1347, 1365
SfuI	TTCGAA	1 cut(s)	1217
SmiMI	CAYNNNNRTG	3 cut(s)	330, 1013, 1083
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SsiI	CCGC	3 cut(s)	792, 909, 1238
SspI	AATATT	1 cut(s)	655
SspMI	CTAG	5 cut(s)	44, 344, 611, 738, 839
SstI	GAGCTC	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	4 cut(s)	143, 752, 776, 875
TaiI	ACGT	1 cut(s)	1002
TaqI	TCGA	2 cut(s)	400, 1217
TatI	WGTACW	3 cut(s)	46, 114, 1406
TauI	GCSGC	1 cut(s)	1241
TfiI	GAWTC	3 cut(s)	104, 722, 956
Tru1I	TTAA	3 cut(s)	33, 1053, 1397
Tru9I	TTAA	3 cut(s)	33, 1053, 1397
TscAI	CASTG	7 cut(s)	124, 148, 156, 463, 880, 901, 1409
TseFI	GTSAC	4 cut(s)	147, 1074, 1297, 1313
TseI	GCWGC	8 cut(s)	129, 209, 413, 416, 517, 1166, 1255, 1321
Tsp45I	GTSAC	4 cut(s)	147, 1074, 1297, 1313
TspDTI	ATGAA	5 cut(s)	110, 374, 623, 1055, 1073
TspRI	CASTG	7 cut(s)	124, 148, 156, 463, 880, 901, 1409
Van91I	CCANNNNNTGG	2 cut(s)	395, 1044
XapI	RAATTY	5 cut(s)	98, 158, 506, 591, 1358
XceI	RCATGY	3 cut(s)	861, 1082, 1269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	273
XspI	CTAG	5 cut(s)	44, 344, 611, 738, 839
ZrmI	AGTACT	1 cut(s)	48
Zsp2I	ATGCAT	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.