Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006896.1

Orthogroup ID

OG0005230

Physical Location & Seq

Genomic Coordinates Forward (+)

75157 .. 77543

Gene Structure 2387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006896.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

atgggattgttgagaagaaatcccatgaaaactcaagtgatgaaatcagtgttaatagtagttgtggtggccttaatactaagagggggagagagcagaggagtagccaaggccaagcctaaggcccccataaaatctgagtcgtttcagtactctgctatgaattgcagagctcacagtgcttcactgaccgagtttggaggagttggagatggaaagacatcaaatacaaaggcttttcagactgcaatcagtaagctgagccagtttgcaacagatggaggtgctcagctttttgttccagctgggaaatggttgacaggaagcttcagcctcaccagccatttcactctttatcttcacaaggatgctgttcttcttgcttctcaggacttgaatgagtggcctgtgcttaaagcccttccatcttatggtagaggaagagatgcagcagctggaaggttctccagtctcatatttggaacaaatctcactgatgtcattgttacaggagacaatggcacaattgatggtcaaggtgagttctggtggcaacagttccacaagaagaagctaaaatacacccgcccttacctgattgagatcatgttctcaagtgatatccagatctcagatctcaccctcctaaattctccatcatggaatgttcatcctgtctatagcagtaacattcttgtgcaagggattactatcattgctccaatttcgtctccaaacactgatgggatcaatccagattcttgcacaaatactagaattgaagactgttacattgtctctggtgatgattgtgtagctgttaagagaggttgggatgagtatggcatatcatttggaatgccaacaaaacaactagtgatcagacggctcacatgcatttccccctacagtgcaaccatcgcattgggcagcgaaatgtcaggtgggatccaagatgtcagagccgaagacatcgtggccatcaatacggaatcagcggtcaggatcaagacagcagtagggagaggagggtatgtgaaagacatatatgtaaggagaatgacactgcacacaatgaaatgggcattttggatgactggtaattatgggtcacatgctgatggtaactatgacaaaaatgcctttcctgagattactgggattaactatagagacgtggtggctgaaaatgtaaccatggctgcaagattggaaggcattgccgaccatccatttacagggatttgcatgtccaatgtgaccattggattggcaaagaaggcaaagaagcagccatggacatgtactgatattcaggggatcacaagcggtgtgacgccaacgccctgtggtctgctgcctgatcaaggaactgctaaacctggtggttgtgattttccagcagatgatataccgatcgacatggtagagattaaaaagtgtacttataggagtaatgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28 Pectate_lyase_3

Protein Analysis

487

Amino Acids

52.97

Weight (kDa)

8.66

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61490 AT3G61490 AT3G61490 AT3G61490 AT3G61490
fragaria_vesca	FvH4_3g12401 FvH4_7g15040
malus_domestica	MD00G1112000.v1.1 MD01G1069000.v1.1
prunus_persica	Prupe.2G175100_v2.0.a1 Prupe.2G175100_v2.0.a1
pyrus_communis	pycom01g09850
rosa_chinensis	RchiOBHm_Chr1g0357161 RchiOBHm_Chr5g0020281
rosa_laevigata	RLG00000028048
rosa_multiflora	Rmu_sc0005967.1_g000009 Rmu_sc0006896.1_g000016 Rmu_sc0023664.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299030
rosa_rugosa	Rorug01G0254400 Rorug05G0058300
rosa_samantha	Rh1AG268700 Rh1BG236400 Rh1DG263500 Rh5BG148200 Rh5CG159700 Rh5DG147100
rosa_wichuraiana	Rw1G023710 Rw5G013160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	431
AciI	CCGC	3 cut(s)	586, 998, 1329
AclWI	GGATC	5 cut(s)	755, 943, 956, 1013, 1328
AcoI	YGGCCR	1 cut(s)	978
AcsI	RAATTY	1 cut(s)	649
AcuI	CTGAAG	1 cut(s)	313
AcyI	GRCGYC	1 cut(s)	1337
AfaI	GTAC	3 cut(s)	152, 1306, 1444
AfiI	CCNNNNNNNGG	3 cut(s)	431, 1238, 1367
AflIII	ACRYGT	1 cut(s)	1301
AgsI	TTSAA	2 cut(s)	397, 782
AhlI	ACTAGT	1 cut(s)	874
AjiI	CACGTC	1 cut(s)	1177
AjnI	CCWGG	1 cut(s)	1381
AluBI	AGCT	8 cut(s)	173, 259, 292, 305, 327, 455, 574, 818
AluI	AGCT	8 cut(s)	173, 259, 292, 305, 327, 455, 574, 818
Alw21I	GWGCWC	2 cut(s)	175, 289
Alw26I	GTCTC	5 cut(s)	476, 507, 735, 802, 1167
AlwI	GGATC	5 cut(s)	755, 943, 956, 1013, 1328
AlwNI	CAGNNNCTG	1 cut(s)	455
AoxI	GGCC	5 cut(s)	69, 111, 123, 404, 978
ApeKI	GCWGC	6 cut(s)	449, 452, 930, 1202, 1291, 1357
ApoI	RAATTY	1 cut(s)	649
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	4 cut(s)	328, 551, 631, 815
AxyI	CCTNAGG	1 cut(s)	120
BalI	TGGCCA	1 cut(s)	980
BamHI	GGATCC	1 cut(s)	948
BanII	GRGCYC	1 cut(s)	175
BarI	GAAGNNNNNNTAC	2 cut(s)	563, 595
BbsI	GAAGAC	2 cut(s)	789, 975
Bbv12I	GWGCWC	2 cut(s)	175, 289
BbvI	GCAGC	6 cut(s)	461, 464, 942, 1189, 1303, 1344
BceAI	ACGGC	1 cut(s)	902
BciT130I	CCWGG	1 cut(s)	1383
BclI	TGATCA	2 cut(s)	879, 1363
BcoDI	GTCTC	5 cut(s)	476, 507, 735, 802, 1167
BcuI	ACTAGT	1 cut(s)	874
BfaI	CTAG	2 cut(s)	774, 875
BfmI	CTRYAG	3 cut(s)	679, 907, 1168
BglII	AGATCT	2 cut(s)	627, 634
BisI	GCNGC	6 cut(s)	450, 453, 931, 1203, 1292, 1358
BlpI	GCTNAGC	2 cut(s)	260, 288
BlsI	GCNGC	6 cut(s)	451, 454, 932, 1204, 1293, 1359
BmcAI	AGTACT	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	1383
BmgBI	CACGTC	1 cut(s)	1177
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	2 cut(s)	126, 950
BmrFI	CCNGG	1 cut(s)	1383
BmrI	ACTGGG	1 cut(s)	1167
BmsI	GCATC	2 cut(s)	358, 436
BmuI	ACTGGG	1 cut(s)	1167
BpiI	GAAGAC	2 cut(s)	789, 975
BpmI	CTGGAG	1 cut(s)	451
Bpu1102I	GCTNAGC	2 cut(s)	260, 288
BpuEI	CTTGAG	2 cut(s)	18, 598
BsaBI	GATNNNNATC	2 cut(s)	602, 710
BsaHI	GRCGYC	1 cut(s)	1337
BsaJI	CCNNGG	3 cut(s)	108, 1197, 1295
BsaXI	ACNNNNNCTCC	2 cut(s)	1020, 1050
Bsc4I	CCNNNNNNNGG	3 cut(s)	431, 1238, 1367
Bse1I	ACTGG	4 cut(s)	265, 468, 1102, 1162
Bse21I	CCTNAGG	1 cut(s)	120
Bse3DI	GCAATG	2 cut(s)	714, 1218
Bse8I	GATNNNNATC	2 cut(s)	602, 710
BseBI	CCWGG	1 cut(s)	1383
BseDI	CCNNGG	3 cut(s)	108, 1197, 1295
BseGI	GGATG	5 cut(s)	373, 670, 841, 1098, 1228
BseJI	GATNNNNATC	2 cut(s)	602, 710
BseLI	CCNNNNNNNGG	3 cut(s)	431, 1238, 1367
BseMI	GCAATG	2 cut(s)	714, 1218
BseMII	CTCAG	6 cut(s)	129, 251, 302, 401, 645, 1140
BseNI	ACTGG	4 cut(s)	265, 468, 1102, 1162
BseRI	GAGGAG	3 cut(s)	114, 216, 1041
BseXI	GCAGC	6 cut(s)	461, 464, 942, 1189, 1303, 1344
BseYI	CCCAGC	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	1052
Bsh1285I	CGRYCG	1 cut(s)	1419
BshFI	GGCC	5 cut(s)	71, 113, 125, 406, 980
BsiEI	CGRYCG	1 cut(s)	1419
BsiHKAI	GWGCWC	2 cut(s)	175, 289
BslI	CCNNNNNNNGG	3 cut(s)	431, 1238, 1367
BsmAI	GTCTC	5 cut(s)	476, 507, 735, 802, 1167
BsmBI	CGTCTC	2 cut(s)	735, 1167
BsmI	GAATGC	1 cut(s)	864
BsnI	GGCC	5 cut(s)	71, 113, 125, 406, 980
Bsp1286I	GDGCHC	2 cut(s)	175, 289
Bsp1720I	GCTNAGC	2 cut(s)	260, 288
Bsp19I	CCATGG	2 cut(s)	1197, 1295
BspACI	CCGC	3 cut(s)	586, 998, 1329
BspANI	GGCC	5 cut(s)	71, 113, 125, 406, 980
BspCNI	CTCAG	6 cut(s)	130, 252, 301, 400, 644, 1141
BspLI	GGNNCC	2 cut(s)	126, 950
BspPI	GGATC	5 cut(s)	755, 943, 956, 1013, 1328
BsrDI	GCAATG	2 cut(s)	714, 1218
BsrI	ACTGG	4 cut(s)	265, 468, 1102, 1162
BssECI	CCNNGG	3 cut(s)	108, 1197, 1295
BssNI	GRCGYC	1 cut(s)	1337
BssT1I	CCWWGG	3 cut(s)	108, 1197, 1295
Bst2UI	CCWGG	1 cut(s)	1383
Bst4CI	ACNGT	4 cut(s)	179, 558, 788, 911
Bst6I	CTCTTC	1 cut(s)	436
BstACI	GRCGYC	1 cut(s)	1337
BstDEI	CTNAG	8 cut(s)	80, 120, 138, 260, 288, 387, 631, 1149
BstDSI	CCRYGG	2 cut(s)	1197, 1295
BstENI	CCTNNNNNAGG	1 cut(s)	1365
BstF5I	GGATG	5 cut(s)	373, 670, 841, 1098, 1228
BstMAI	GTCTC	5 cut(s)	476, 507, 735, 802, 1167
BstMCI	CGRYCG	1 cut(s)	1419
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 339, 920, 1280
BstNI	CCWGG	1 cut(s)	1383
BstNSI	RCATGY	4 cut(s)	897, 1118, 1252, 1305
BstSCI	CCNGG	1 cut(s)	1381
BstSFI	CTRYAG	3 cut(s)	679, 907, 1168
BstV1I	GCAGC	6 cut(s)	461, 464, 942, 1189, 1303, 1344
BstV2I	GAAGAC	2 cut(s)	789, 975
BstX2I	RGATCY	3 cut(s)	627, 634, 948
BstXI	CCANNNNNNTGG	2 cut(s)	925, 1270
BstYI	RGATCY	3 cut(s)	627, 634, 948
Bsu36I	CCTNAGG	1 cut(s)	120
BsuRI	GGCC	5 cut(s)	71, 113, 125, 406, 980
BtgI	CCRYGG	2 cut(s)	1197, 1295
BtgZI	GCGATG	1 cut(s)	904
BtrI	CACGTC	1 cut(s)	1177
BtsCI	GGATG	5 cut(s)	373, 670, 841, 1098, 1228
BtsI	GCAGTG	1 cut(s)	1064
BtsIMutI	CAGTG	7 cut(s)	54, 184, 185, 492, 738, 916, 1064
CaiI	CAGNNNCTG	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	124
CseI	GACGC	1 cut(s)	1345
CsiI	ACCWGGT	1 cut(s)	1381
Csp6I	GTAC	3 cut(s)	151, 1305, 1443
CviQI	GTAC	3 cut(s)	151, 1305, 1443
DdeI	CTNAG	8 cut(s)	80, 120, 138, 260, 288, 387, 631, 1149
EaeI	YGGCCR	1 cut(s)	978
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
Ecl136II	GAGCTC	1 cut(s)	173
Eco130I	CCWWGG	3 cut(s)	108, 1197, 1295
Eco24I	GRGCYC	1 cut(s)	175
Eco32I	GATATC	1 cut(s)	622
Eco53kI	GAGCTC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	313
Eco81I	CCTNAGG	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	173
EcoNI	CCTNNNNNAGG	1 cut(s)	1365
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	1381
EcoRV	GATATC	1 cut(s)	622
EcoT14I	CCWWGG	3 cut(s)	108, 1197, 1295
EcoT22I	ATGCAT	1 cut(s)	899
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	3 cut(s)	108, 1197, 1295
Esp3I	CGTCTC	2 cut(s)	735, 1167
FauI	CCCGC	1 cut(s)	593
FbaI	TGATCA	2 cut(s)	879, 1363
Fnu4HI	GCNGC	6 cut(s)	450, 453, 931, 1203, 1292, 1358
FokI	GGATG	5 cut(s)	380, 657, 848, 1105, 1215
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	6 cut(s)	450, 453, 931, 1203, 1292, 1358
FspBI	CTAG	2 cut(s)	774, 875
GluI	GCNGC	6 cut(s)	450, 453, 931, 1203, 1292, 1358
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	451
HaeIII	GGCC	5 cut(s)	71, 113, 125, 406, 980
HgaI	GACGC	1 cut(s)	1345
Hin1I	GRCGYC	1 cut(s)	1337
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HindIII	AAGCTT	1 cut(s)	325
HinfI	GANTC	3 cut(s)	140, 758, 992
HphI	GGTGA	4 cut(s)	328, 551, 631, 815
Hpy166II	GTNNAC	2 cut(s)	318, 1443
Hpy188I	TCNGA	5 cut(s)	139, 243, 634, 884, 962
Hpy188III	TCNNGA	6 cut(s)	389, 625, 755, 1003, 1009, 1148
Hpy8I	GTNNAC	2 cut(s)	318, 1443
HpyAV	CCTTC	4 cut(s)	431, 453, 1208, 1273
HpyCH4III	ACNGT	4 cut(s)	179, 558, 788, 911
HpyCH4IV	ACGT	1 cut(s)	1176
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 339, 920, 1280
HpyF3I	CTNAG	8 cut(s)	80, 120, 138, 260, 288, 387, 631, 1149
HpySE526I	ACGT	1 cut(s)	1176
Hsp92I	GRCGYC	1 cut(s)	1337
Ksp22I	TGATCA	2 cut(s)	879, 1363
LmnI	GCTCC	1 cut(s)	724
Lsp1109I	GCAGC	6 cut(s)	461, 464, 942, 1189, 1303, 1344
LweI	GCATC	2 cut(s)	358, 436
MabI	ACCWGGT	1 cut(s)	1381
MaeI	CTAG	2 cut(s)	774, 875
MaeII	ACGT	1 cut(s)	1176
MaeIII	GTNAC	8 cut(s)	505, 686, 788, 1110, 1124, 1192, 1258, 1333
MboII	GAAGA	7 cut(s)	27, 350, 368, 453, 580, 794, 980
MfeI	CAATTG	1 cut(s)	525
MflI	RGATCY	3 cut(s)	627, 634, 948
MhlI	GDGCHC	2 cut(s)	175, 289
MlsI	TGGCCA	1 cut(s)	980
MluCI	AATT	6 cut(s)	163, 525, 649, 723, 777, 1102
MluNI	TGGCCA	1 cut(s)	980
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	187
Mox20I	TGGCCA	1 cut(s)	980
Mph1103I	ATGCAT	1 cut(s)	899
MscI	TGGCCA	1 cut(s)	980
MseI	TTAA	6 cut(s)	53, 74, 414, 822, 1164, 1434
MslI	CAYNNNNRTG	4 cut(s)	366, 695, 1119, 1300
Msp20I	TGGCCA	1 cut(s)	980
MspA1I	CMGCKG	3 cut(s)	305, 455, 998
MspR9I	CCNGG	1 cut(s)	1383
MunI	CAATTG	1 cut(s)	525
Mva1269I	GAATGC	1 cut(s)	864
MvaI	CCWGG	1 cut(s)	1383
MwoI	GCNNNNNNNGC	4 cut(s)	179, 339, 920, 1280
NcoI	CCATGG	2 cut(s)	1197, 1295
NlaIV	GGNNCC	2 cut(s)	126, 950
NmuCI	GTSAC	3 cut(s)	1110, 1258, 1333
NsiI	ATGCAT	1 cut(s)	899
NspI	RCATGY	4 cut(s)	897, 1118, 1252, 1305
PciI	ACATGT	1 cut(s)	1301
PctI	GAATGC	1 cut(s)	864
PfeI	GAWTC	2 cut(s)	758, 992
PflMI	CCANNNNNTGG	1 cut(s)	431
PkrI	GCNGC	6 cut(s)	451, 454, 932, 1204, 1293, 1359
Ple19I	CGATCG	1 cut(s)	1419
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PscI	ACATGT	1 cut(s)	1301
Psp124BI	GAGCTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	1381
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	1381
PspN4I	GGNNCC	2 cut(s)	126, 950
PspPI	GGNCC	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	455
PsuI	RGATCY	3 cut(s)	627, 634, 948
PvuI	CGATCG	1 cut(s)	1419
PvuII	CAGCTG	2 cut(s)	305, 455
RsaI	GTAC	3 cut(s)	152, 1306, 1444
RsaNI	GTAC	3 cut(s)	151, 1305, 1443
RseI	CAYNNNNRTG	4 cut(s)	366, 695, 1119, 1300
SacI	GAGCTC	1 cut(s)	175
SaqAI	TTAA	6 cut(s)	53, 74, 414, 822, 1164, 1434
SatI	GCNGC	6 cut(s)	450, 453, 931, 1203, 1292, 1358
Sau96I	GGNCC	1 cut(s)	124
ScaI	AGTACT	1 cut(s)	152
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	1383
SduI	GDGCHC	2 cut(s)	175, 289
SexAI	ACCWGGT	1 cut(s)	1381
SfaNI	GCATC	2 cut(s)	358, 436
SfcI	CTRYAG	3 cut(s)	679, 907, 1168
SmiMI	CAYNNNNRTG	4 cut(s)	366, 695, 1119, 1300
SmlI	CTYRAG	2 cut(s)	33, 613
SmoI	CTYRAG	2 cut(s)	33, 613
SpeI	ACTAGT	1 cut(s)	874
Sse9I	AATT	6 cut(s)	163, 525, 649, 723, 777, 1102
SsiI	CCGC	3 cut(s)	586, 998, 1329
SspMI	CTAG	2 cut(s)	774, 875
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	1381
StyI	CCWWGG	3 cut(s)	108, 1197, 1295
TaaI	ACNGT	4 cut(s)	179, 558, 788, 911
TaiI	ACGT	1 cut(s)	1179
TaqI	TCGA	1 cut(s)	1419
TaqII	GACCGA	1 cut(s)	206
TasI	AATT	6 cut(s)	163, 525, 649, 723, 777, 1102
TatI	WGTACW	3 cut(s)	150, 1304, 1442
TfiI	GAWTC	2 cut(s)	758, 992
Tru1I	TTAA	6 cut(s)	53, 74, 414, 822, 1164, 1434
Tru9I	TTAA	6 cut(s)	53, 74, 414, 822, 1164, 1434
TscAI	CASTG	7 cut(s)	54, 184, 192, 499, 745, 916, 1071
TseFI	GTSAC	3 cut(s)	1110, 1258, 1333
TseI	GCWGC	6 cut(s)	449, 452, 930, 1202, 1291, 1357
Tsp45I	GTSAC	3 cut(s)	1110, 1258, 1333
TspDTI	ATGAA	5 cut(s)	41, 56, 176, 659, 1091
TspGWI	ACGGA	1 cut(s)	1004
TspRI	CASTG	7 cut(s)	54, 184, 192, 499, 745, 916, 1071
Van91I	CCANNNNNTGG	1 cut(s)	431
XagI	CCTNNNNNAGG	1 cut(s)	1365
XapI	RAATTY	1 cut(s)	649
XceI	RCATGY	4 cut(s)	897, 1118, 1252, 1305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	309
XspI	CTAG	2 cut(s)	774, 875
ZrmI	AGTACT	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.